Wall clock time and date at job start Fri Apr 10 2020 17:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50696 * 120.00421 * 2 1 4 4 C 1.31010 * 120.00065 * 180.02562 * 2 1 3 5 5 C 1.50691 * 120.00367 * 179.97438 * 4 2 1 6 6 C 1.50705 * 119.99519 * 0.02562 * 4 2 1 7 7 C 1.50697 * 109.47367 * 95.00158 * 6 4 2 8 8 O 1.21280 * 119.99687 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99832 * 180.02562 * 7 6 4 10 10 C 1.46498 * 119.99826 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47343 * 173.56286 * 10 9 7 12 12 H 1.08997 * 109.87261 * 58.29837 * 11 10 9 13 13 C 1.54327 * 109.88471 * 179.31722 * 11 10 9 14 14 C 1.55399 * 102.82737 * 141.51866 * 13 11 10 15 15 C 1.54906 * 101.66764 * 324.66333 * 14 13 11 16 16 N 1.47028 * 109.88139 * 297.28845 * 11 10 9 17 17 C 1.36928 * 125.65089 * 61.60329 * 16 11 10 18 18 H 1.07998 * 119.99885 * 324.48750 * 17 16 11 19 19 C 1.38815 * 120.00095 * 144.48984 * 17 16 11 20 20 N 1.31613 * 120.00044 * 162.39598 * 19 17 16 21 21 Si 1.86796 * 120.00012 * 342.39470 * 19 17 16 22 22 H 1.48504 * 109.46902 * 92.26422 * 21 19 17 23 23 H 1.48494 * 109.47285 * 212.26381 * 21 19 17 24 24 H 1.48500 * 109.47151 * 332.26786 * 21 19 17 25 25 H 1.08996 * 109.47088 * 269.99975 * 1 2 3 26 26 H 1.09000 * 109.47176 * 29.99729 * 1 2 3 27 27 H 1.09003 * 109.47237 * 150.00208 * 1 2 3 28 28 H 1.09001 * 109.47257 * 240.00077 * 3 2 1 29 29 H 1.09000 * 109.47028 * 359.97438 * 3 2 1 30 30 H 1.09000 * 109.47178 * 120.00048 * 3 2 1 31 31 H 1.08996 * 109.47248 * 270.00214 * 5 4 2 32 32 H 1.09003 * 109.46896 * 29.99869 * 5 4 2 33 33 H 1.08997 * 109.47236 * 149.99499 * 5 4 2 34 34 H 1.09002 * 109.47143 * 334.99511 * 6 4 2 35 35 H 1.09006 * 109.46537 * 215.00262 * 6 4 2 36 36 H 0.97002 * 119.99873 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47422 * 53.56084 * 10 9 7 38 38 H 1.08998 * 109.46945 * 293.56604 * 10 9 7 39 39 H 1.08998 * 110.71498 * 259.97113 * 13 11 10 40 40 H 1.08997 * 110.72058 * 23.24911 * 13 11 10 41 41 H 1.09000 * 111.03972 * 206.53112 * 14 13 11 42 42 H 1.09000 * 110.89298 * 82.73007 * 14 13 11 43 43 H 1.09005 * 110.36801 * 278.08897 * 15 14 13 44 44 H 1.09004 * 110.46276 * 155.81640 * 15 14 13 45 45 H 0.97005 * 120.00665 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 3.6689 -1.1347 -0.0011 6 6 1.4084 -2.4397 -0.0017 7 6 1.2650 -2.9357 -1.4174 8 8 1.7286 -2.2925 -2.3351 9 7 0.6206 -4.0935 -1.6637 10 6 0.4817 -4.5761 -3.0400 11 6 -0.1401 -5.9739 -3.0300 12 1 -1.1099 -5.9446 -2.5333 13 6 -0.3066 -6.4846 -4.4768 14 6 0.0508 -7.9920 -4.3539 15 6 1.1665 -7.9628 -3.2796 16 7 0.7509 -6.9125 -2.3322 17 6 1.1320 -6.8251 -1.0199 18 1 1.2959 -5.8578 -0.5685 19 6 1.3079 -7.9799 -0.2699 20 7 1.9921 -7.9370 0.8536 21 14 0.5735 -9.5946 -0.8551 22 1 1.5751 -10.3271 -1.6709 23 1 0.1927 -10.4198 0.3193 24 1 -0.6312 -9.3207 -1.6791 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 2.8872 1.3627 -0.8900 29 1 1.5523 2.1335 -0.0005 30 1 2.8872 1.3627 0.8900 31 1 4.0319 -1.1344 -1.0288 32 1 4.0325 -0.2448 0.5128 33 1 4.0324 -2.0247 0.5125 34 1 0.4200 -2.2889 0.4324 35 1 1.9556 -3.1756 0.5876 36 1 0.2495 -4.6077 -0.9297 37 1 1.4637 -4.6186 -3.5110 38 1 -0.1608 -3.8966 -3.6001 39 1 -1.3348 -6.3560 -4.8151 40 1 0.3875 -5.9776 -5.1470 41 1 0.4284 -8.3829 -5.2987 42 1 -0.8079 -8.5683 -4.0096 43 1 2.1238 -7.7067 -3.7337 44 1 1.2332 -8.9257 -2.7732 45 1 2.1147 -8.7439 1.3780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691091746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:03 Heat of formation + Delta-G solvation = -8.136749 kcal Electronic energy + Delta-G solvation = -22848.636844 eV Core-core repulsion = 19673.761371 eV Total energy + Delta-G solvation = -3174.875473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.44830 -38.03713 -36.75430 -33.87140 -32.69092 -31.00765 -30.00243 -29.82366 -28.87539 -26.49608 -24.89493 -23.95698 -23.13932 -20.96407 -19.87113 -19.46926 -17.37207 -16.68309 -16.24629 -16.03676 -15.51727 -15.15321 -14.61998 -14.29448 -14.08936 -13.95430 -13.46788 -13.04469 -12.95895 -12.55346 -12.54893 -12.37906 -12.20267 -11.99419 -11.96398 -11.84931 -11.47927 -11.35265 -11.29648 -11.11988 -10.87431 -10.73052 -10.55196 -10.44767 -10.21811 -9.86661 -9.58337 -9.31469 -8.62441 -8.30524 -8.24545 -6.88412 -6.06654 -3.50807 2.30047 3.24561 3.27042 3.41030 3.46061 3.95887 4.46198 4.87244 4.90560 5.07785 5.11198 5.24149 5.31134 5.42676 5.44094 5.48277 5.54454 5.59528 5.61576 5.78446 5.84346 5.86373 5.90092 5.94416 6.02332 6.04120 6.06837 6.10197 6.12314 6.13807 6.24997 6.27398 6.33650 6.39155 6.56258 6.82797 6.83082 6.85841 7.13655 7.19837 7.82001 8.20293 8.25906 8.73346 8.87490 9.57994 10.17586 11.07646 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.004700 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.039339 B = 5955.527154 C = 6768.776525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.143 4.143 3 C -0.108 4.108 4 C -0.100 4.100 5 C -0.115 4.115 6 C -0.111 4.111 7 C 0.514 3.486 8 O -0.556 6.556 9 N -0.711 5.711 10 C 0.118 3.882 11 C 0.143 3.857 12 H 0.047 0.953 13 C -0.121 4.121 14 C -0.136 4.136 15 C 0.116 3.884 16 N -0.601 5.601 17 C -0.257 4.257 18 H 0.092 0.908 19 C 0.035 3.965 20 N -0.902 5.902 21 Si 0.891 3.109 22 H -0.287 1.287 23 H -0.304 1.304 24 H -0.269 1.269 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.412 0.588 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.042 0.958 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 10.460 -3.575 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.143 4.143 3 C -0.165 4.165 4 C -0.100 4.100 5 C -0.172 4.172 6 C -0.151 4.151 7 C 0.300 3.700 8 O -0.435 6.435 9 N -0.365 5.365 10 C -0.008 4.008 11 C 0.036 3.964 12 H 0.065 0.935 13 C -0.160 4.160 14 C -0.174 4.174 15 C -0.008 4.008 16 N -0.327 5.327 17 C -0.384 4.384 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.543 5.543 21 Si 0.722 3.278 22 H -0.215 1.215 23 H -0.232 1.232 24 H -0.195 1.195 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.251 0.749 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.368 10.816 -3.973 12.005 hybrid contribution -0.437 -1.426 0.131 1.497 sum -3.805 9.390 -3.842 10.836 Atomic orbital electron populations 1.20827 0.92672 1.02228 1.01385 1.21261 0.95374 0.94486 1.03193 1.20732 0.99555 0.94568 1.01618 1.20841 0.95489 0.92888 1.00803 1.20808 0.92210 1.01875 1.02284 1.20796 1.02129 0.96682 0.95455 1.20434 0.77896 0.80870 0.90767 1.90625 1.48973 1.57376 1.46492 1.46276 1.57091 1.22733 1.10350 1.21862 1.00714 0.95361 0.82891 1.21280 0.93587 0.89347 0.92204 0.93494 1.22532 1.00973 0.96164 0.96307 1.22815 0.99564 0.96154 0.98880 1.21912 0.95070 0.93295 0.90557 1.44676 1.52455 1.28129 1.07482 1.18673 1.41747 0.94445 0.83561 0.89098 1.25424 0.97818 0.98288 0.95114 1.69795 1.39661 1.29023 1.15847 0.86710 0.80405 0.84062 0.76589 1.21513 1.23232 1.19462 0.91839 0.92300 0.91954 0.91840 0.92594 0.91908 0.91132 0.92071 0.92006 0.88616 0.87946 0.74883 0.91928 0.93194 0.91405 0.91290 0.91553 0.91637 0.95144 0.93995 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.08 36.00 0.33 -1.05 16 2 C -0.14 -1.91 6.05 -101.07 -0.61 -2.53 16 3 C -0.11 -1.19 8.76 36.00 0.32 -0.88 16 4 C -0.10 -1.48 4.55 -101.07 -0.46 -1.94 16 5 C -0.12 -1.61 9.54 36.00 0.34 -1.26 16 6 C -0.11 -1.73 5.19 -29.03 -0.15 -1.88 16 7 C 0.51 9.60 7.61 -10.99 -0.08 9.52 16 8 O -0.56 -11.90 16.02 5.56 0.09 -11.81 16 9 N -0.71 -13.27 4.37 -60.30 -0.26 -13.54 16 10 C 0.12 2.16 5.17 -4.04 -0.02 2.14 16 11 C 0.14 2.65 3.32 -66.95 -0.22 2.42 16 12 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 13 C -0.12 -1.86 6.50 -24.76 -0.16 -2.02 16 14 C -0.14 -2.25 7.09 -24.45 -0.17 -2.42 16 15 C 0.12 2.43 6.26 -2.53 -0.02 2.42 16 16 N -0.60 -13.56 2.68 -162.57 -0.44 -13.99 16 17 C -0.26 -6.65 9.49 -15.06 -0.14 -6.79 16 18 H 0.09 2.40 5.40 -52.49 -0.28 2.12 16 19 C 0.03 0.95 5.45 -17.43 -0.10 0.85 16 20 N -0.90 -26.26 13.97 55.49 0.78 -25.49 16 21 Si 0.89 21.79 24.85 -169.99 -4.23 17.56 16 22 H -0.29 -6.97 6.74 56.52 0.38 -6.59 16 23 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 24 H -0.27 -6.40 7.10 56.52 0.40 -6.00 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 27 H 0.06 0.82 6.27 -51.93 -0.33 0.49 16 28 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 29 H 0.05 0.54 7.94 -51.93 -0.41 0.12 16 30 H 0.06 0.62 7.36 -51.93 -0.38 0.24 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 33 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.10 1.30 6.26 -51.93 -0.33 0.97 16 35 H 0.10 1.63 8.10 -51.93 -0.42 1.21 16 36 H 0.41 7.80 6.14 -40.82 -0.25 7.55 16 37 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.96 3.11 -51.93 -0.16 0.80 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -30.79 347.52 -7.49 -38.28 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.52 Total: 7.17 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.15 Total: -3.42 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.08 Total: -53.02 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.23 Total: 17.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.79 -7.49 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691091746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.143 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds