Wall clock time and date at job start Fri Apr 10 2020 17:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47147 * 2 1 4 4 C 1.50697 * 120.00011 * 87.56821 * 3 2 1 5 5 C 1.32989 * 119.99739 * 267.56677 * 3 2 1 6 6 C 1.47100 * 120.00424 * 7.58039 * 5 3 2 7 7 O 1.21612 * 119.99450 * 6.27529 * 6 5 3 8 8 N 1.34780 * 120.00007 * 186.27045 * 6 5 3 9 9 C 1.46497 * 119.99507 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47141 * 180.02562 * 9 8 6 11 11 H 1.09007 * 110.53577 * 307.61334 * 10 9 8 12 12 C 1.54889 * 110.48769 * 70.22112 * 10 9 8 13 13 C 1.54884 * 102.74863 * 156.62184 * 12 10 9 14 14 C 1.54267 * 104.20057 * 322.05963 * 13 12 10 15 15 H 1.09000 * 110.07478 * 142.91467 * 14 13 12 16 16 N 1.46492 * 110.03303 * 264.32568 * 14 13 12 17 17 C 1.36936 * 120.00118 * 272.15883 * 16 14 13 18 18 H 1.07994 * 119.99813 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99929 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99862 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00278 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46769 * 89.99624 * 21 19 17 23 23 H 1.48494 * 109.47372 * 209.99904 * 21 19 17 24 24 H 1.48504 * 109.47172 * 330.00408 * 21 19 17 25 25 C 1.53876 * 106.59418 * 23.60901 * 14 13 12 26 26 H 1.09003 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47262 * 300.00039 * 1 2 3 28 28 H 1.08996 * 109.46779 * 60.00120 * 1 2 3 29 29 H 1.08996 * 109.46853 * 239.99839 * 2 1 3 30 30 H 1.09002 * 109.46843 * 119.99446 * 2 1 3 31 31 H 1.09005 * 109.46926 * 270.00014 * 4 3 2 32 32 H 1.09002 * 109.47707 * 29.99803 * 4 3 2 33 33 H 1.09001 * 109.47383 * 149.99954 * 4 3 2 34 34 H 1.08000 * 119.99952 * 187.58326 * 5 3 2 35 35 H 0.96994 * 120.00150 * 0.02562 * 8 6 5 36 36 H 1.09006 * 109.47586 * 60.00436 * 9 8 6 37 37 H 1.09007 * 109.47582 * 300.00030 * 9 8 6 38 38 H 1.08998 * 110.75823 * 274.94284 * 12 10 9 39 39 H 1.09006 * 110.74995 * 38.30884 * 12 10 9 40 40 H 1.09002 * 110.48667 * 203.38233 * 13 12 10 41 41 H 1.09006 * 110.59860 * 80.79648 * 13 12 10 42 42 H 0.97007 * 119.99943 * 92.16621 * 16 14 13 43 43 H 0.97005 * 120.00611 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.03277 * 240.71846 * 25 14 13 45 45 H 1.09002 * 110.03443 * 119.28681 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2313 2.1497 1.3039 5 6 2.3001 2.0314 -1.1507 6 6 1.9506 1.3851 -2.4251 7 8 1.3158 0.3478 -2.4267 8 7 2.3339 1.9425 -3.5908 9 6 1.9854 1.2991 -4.8599 10 6 2.5364 2.1293 -6.0209 11 1 2.2216 3.1691 -5.9307 12 6 4.0815 2.0332 -6.0708 13 6 4.3974 2.3704 -7.5491 14 6 3.2602 1.6946 -8.3428 15 1 2.9710 2.3195 -9.1877 16 7 3.6933 0.3782 -8.8178 17 6 4.3395 0.2625 -10.0195 18 1 4.5303 1.1417 -10.6168 19 6 4.7504 -0.9849 -10.4693 20 7 5.3719 -1.0960 -11.6240 21 14 4.4210 -2.5056 -9.4356 22 1 3.1034 -3.0808 -9.8074 23 1 5.4866 -3.5105 -9.6800 24 1 4.4110 -2.1342 -7.9978 25 6 2.0769 1.5413 -7.3711 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3112 2.6676 1.5747 32 1 2.4885 1.4340 2.0848 33 1 3.0380 2.8746 1.1955 34 1 2.7742 3.0018 -1.1496 35 1 2.8405 2.7697 -3.5894 36 1 0.9010 1.2285 -4.9458 37 1 2.4182 0.2991 -4.8913 38 1 4.5358 2.7643 -5.4021 39 1 4.4138 1.0245 -5.8252 40 1 5.3630 1.9548 -7.8373 41 1 4.3846 3.4488 -7.7076 42 1 3.5221 -0.4115 -8.2810 43 1 5.6588 -1.9677 -11.9386 44 1 1.8249 0.4875 -7.2529 45 1 1.2137 2.0926 -7.7440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691223474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:22 Heat of formation + Delta-G solvation = -27.871563 kcal Electronic energy + Delta-G solvation = -21834.450240 eV Core-core repulsion = 18658.719001 eV Total energy + Delta-G solvation = -3175.731238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.06682 -38.37654 -36.33092 -34.82024 -33.32633 -31.31904 -30.84098 -29.40619 -28.28268 -27.39587 -24.55245 -23.60552 -22.80254 -21.17890 -20.12712 -19.34415 -18.72733 -17.52541 -17.08176 -16.16721 -15.58235 -15.02854 -14.97046 -14.67192 -14.29966 -13.99497 -13.86399 -13.36978 -13.08146 -13.06013 -12.96065 -12.70270 -12.59361 -12.34912 -12.12190 -11.85534 -11.35859 -11.28665 -10.99538 -10.85530 -10.78239 -10.57923 -10.46204 -10.36040 -10.30821 -9.95933 -9.58563 -9.55059 -9.40036 -8.94000 -8.88495 -7.23106 -5.75408 -3.10228 1.16242 3.17492 3.22106 3.39820 3.43402 3.47646 4.47539 4.51847 4.61156 4.77650 4.87749 4.93467 5.01120 5.11540 5.13713 5.20159 5.37915 5.43482 5.43633 5.49219 5.52006 5.59141 5.68288 5.74358 5.76520 5.89928 5.98026 6.01340 6.04221 6.10479 6.13037 6.23502 6.24550 6.32823 6.39904 6.48204 6.53916 6.67622 6.81521 7.01225 7.49306 8.02802 8.21798 8.44459 9.23596 9.96506 10.16499 11.43072 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025007 B = 0.003216 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.412148 B = 8705.595309 C = 9294.440797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C -0.029 4.029 4 C -0.127 4.127 5 C -0.233 4.233 6 C 0.540 3.460 7 O -0.538 6.538 8 N -0.724 5.724 9 C 0.127 3.873 10 C -0.104 4.104 11 H 0.077 0.923 12 C -0.114 4.114 13 C -0.146 4.146 14 C 0.179 3.821 15 H 0.057 0.943 16 N -0.745 5.745 17 C -0.242 4.242 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.124 4.124 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.068 0.932 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 9.516 25.030 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 C -0.031 4.031 4 C -0.183 4.183 5 C -0.254 4.254 6 C 0.330 3.670 7 O -0.418 6.418 8 N -0.374 5.374 9 C 0.004 3.996 10 C -0.123 4.123 11 H 0.095 0.905 12 C -0.152 4.152 13 C -0.186 4.186 14 C 0.070 3.930 15 H 0.075 0.925 16 N -0.388 5.388 17 C -0.372 4.372 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.583 5.583 21 Si 0.713 3.287 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.163 4.163 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.802 8.805 24.747 27.401 hybrid contribution 0.237 -0.635 0.603 0.908 sum -7.565 8.170 25.350 27.687 Atomic orbital electron populations 1.21517 0.94237 1.01708 1.01312 1.21053 0.97160 0.92509 1.03682 1.22561 0.90395 0.95740 0.94416 1.21005 1.02573 1.00228 0.94496 1.22383 1.08704 1.02189 0.92111 1.18571 0.79637 0.84455 0.84341 1.90727 1.40244 1.23409 1.87389 1.45958 1.57421 1.28114 1.05949 1.21484 0.99994 0.96691 0.81466 1.22249 0.96734 0.99148 0.94181 0.90497 1.22517 0.93796 1.01198 0.97656 1.23088 1.01921 0.99229 0.94399 1.20770 0.90552 0.87786 0.93927 0.92463 1.42914 1.70514 1.02919 1.22458 1.19096 1.28821 0.94947 0.94357 0.89231 1.24669 1.00534 0.97154 0.96854 1.69699 1.44797 1.23482 1.20327 0.86573 0.77689 0.84217 0.80202 1.21083 1.21799 1.20303 1.22491 0.98965 1.01237 0.93570 0.92715 0.93853 0.91845 0.87737 0.92263 0.90290 0.91147 0.91192 0.85786 0.76692 0.91673 0.91325 0.92729 0.91590 0.90732 0.92885 0.80669 0.93104 0.91289 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.45 37.16 0.35 -0.94 16 2 C -0.11 -1.07 5.32 -27.88 -0.15 -1.22 16 3 C -0.03 -0.26 5.36 -101.17 -0.54 -0.80 16 4 C -0.13 -0.73 10.05 36.00 0.36 -0.36 16 5 C -0.23 -2.15 9.63 -37.81 -0.36 -2.51 16 6 C 0.54 6.51 7.61 -12.66 -0.10 6.41 16 7 O -0.54 -8.10 11.67 5.27 0.06 -8.04 16 8 N -0.72 -7.73 5.44 -61.49 -0.33 -8.07 16 9 C 0.13 1.57 4.96 -4.04 -0.02 1.55 16 10 C -0.10 -1.27 2.89 -88.96 -0.26 -1.53 16 11 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.11 -1.55 6.19 -24.74 -0.15 -1.70 16 13 C -0.15 -2.41 6.54 -25.07 -0.16 -2.57 16 14 C 0.18 3.34 3.55 -66.81 -0.24 3.10 16 15 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 16 N -0.75 -17.45 4.88 -52.35 -0.26 -17.70 16 17 C -0.24 -6.80 10.44 -15.06 -0.16 -6.96 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 20 N -0.94 -29.53 13.97 55.49 0.78 -28.75 16 21 Si 0.88 22.41 27.74 -169.99 -4.71 17.70 16 22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 25 C -0.12 -1.84 6.14 -25.61 -0.16 -2.00 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.75 6.91 -51.93 -0.36 0.39 16 29 H 0.10 1.33 5.57 -51.93 -0.29 1.04 16 30 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.35 8.06 -51.93 -0.42 -0.06 16 33 H 0.07 0.33 8.06 -51.93 -0.42 -0.09 16 34 H 0.12 0.83 8.04 -52.49 -0.42 0.41 16 35 H 0.40 3.27 8.42 -40.82 -0.34 2.93 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.99 8.02 -51.92 -0.42 0.57 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 40 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.36 8.40 5.38 -40.82 -0.22 8.18 16 43 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 44 H 0.07 1.10 7.31 -51.93 -0.38 0.72 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -32.49 357.48 -8.67 -41.16 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.91 Total: 7.84 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.68 Total: -9.53 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.18 Total: -54.52 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.06 Total: -8.04 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.49 -8.67 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691223474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.290 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds