Wall clock time and date at job start Fri Apr 10 2020 17:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47147 * 2 1 4 4 C 1.50697 * 120.00011 * 87.56821 * 3 2 1 5 5 C 1.32989 * 119.99739 * 267.56677 * 3 2 1 6 6 C 1.47100 * 120.00424 * 7.58039 * 5 3 2 7 7 O 1.21612 * 119.99450 * 6.27529 * 6 5 3 8 8 N 1.34780 * 120.00007 * 186.27045 * 6 5 3 9 9 C 1.46497 * 119.99507 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47141 * 180.02562 * 9 8 6 11 11 H 1.09007 * 110.53577 * 307.61334 * 10 9 8 12 12 C 1.54889 * 110.48769 * 70.22112 * 10 9 8 13 13 C 1.54884 * 102.74863 * 156.62184 * 12 10 9 14 14 C 1.54267 * 104.20057 * 322.05963 * 13 12 10 15 15 H 1.09000 * 110.07478 * 142.91467 * 14 13 12 16 16 N 1.46492 * 110.03303 * 264.32568 * 14 13 12 17 17 C 1.36936 * 120.00118 * 272.15883 * 16 14 13 18 18 H 1.07994 * 119.99813 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99929 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99862 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00278 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46769 * 89.99624 * 21 19 17 23 23 H 1.48494 * 109.47372 * 209.99904 * 21 19 17 24 24 H 1.48504 * 109.47172 * 330.00408 * 21 19 17 25 25 C 1.53876 * 106.59418 * 23.60901 * 14 13 12 26 26 H 1.09003 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47262 * 300.00039 * 1 2 3 28 28 H 1.08996 * 109.46779 * 60.00120 * 1 2 3 29 29 H 1.08996 * 109.46853 * 239.99839 * 2 1 3 30 30 H 1.09002 * 109.46843 * 119.99446 * 2 1 3 31 31 H 1.09005 * 109.46926 * 270.00014 * 4 3 2 32 32 H 1.09002 * 109.47707 * 29.99803 * 4 3 2 33 33 H 1.09001 * 109.47383 * 149.99954 * 4 3 2 34 34 H 1.08000 * 119.99952 * 187.58326 * 5 3 2 35 35 H 0.96994 * 120.00150 * 0.02562 * 8 6 5 36 36 H 1.09006 * 109.47586 * 60.00436 * 9 8 6 37 37 H 1.09007 * 109.47582 * 300.00030 * 9 8 6 38 38 H 1.08998 * 110.75823 * 274.94284 * 12 10 9 39 39 H 1.09006 * 110.74995 * 38.30884 * 12 10 9 40 40 H 1.09002 * 110.48667 * 203.38233 * 13 12 10 41 41 H 1.09006 * 110.59860 * 80.79648 * 13 12 10 42 42 H 0.97007 * 119.99943 * 92.16621 * 16 14 13 43 43 H 0.97005 * 120.00611 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.03277 * 240.71846 * 25 14 13 45 45 H 1.09002 * 110.03443 * 119.28681 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2313 2.1497 1.3039 5 6 2.3001 2.0314 -1.1507 6 6 1.9506 1.3851 -2.4251 7 8 1.3158 0.3478 -2.4267 8 7 2.3339 1.9425 -3.5908 9 6 1.9854 1.2991 -4.8599 10 6 2.5364 2.1293 -6.0209 11 1 2.2216 3.1691 -5.9307 12 6 4.0815 2.0332 -6.0708 13 6 4.3974 2.3704 -7.5491 14 6 3.2602 1.6946 -8.3428 15 1 2.9710 2.3195 -9.1877 16 7 3.6933 0.3782 -8.8178 17 6 4.3395 0.2625 -10.0195 18 1 4.5303 1.1417 -10.6168 19 6 4.7504 -0.9849 -10.4693 20 7 5.3719 -1.0960 -11.6240 21 14 4.4210 -2.5056 -9.4356 22 1 3.1034 -3.0808 -9.8074 23 1 5.4866 -3.5105 -9.6800 24 1 4.4110 -2.1342 -7.9978 25 6 2.0769 1.5413 -7.3711 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3112 2.6676 1.5747 32 1 2.4885 1.4340 2.0848 33 1 3.0380 2.8746 1.1955 34 1 2.7742 3.0018 -1.1496 35 1 2.8405 2.7697 -3.5894 36 1 0.9010 1.2285 -4.9458 37 1 2.4182 0.2991 -4.8913 38 1 4.5358 2.7643 -5.4021 39 1 4.4138 1.0245 -5.8252 40 1 5.3630 1.9548 -7.8373 41 1 4.3846 3.4488 -7.7076 42 1 3.5221 -0.4115 -8.2810 43 1 5.6588 -1.9677 -11.9386 44 1 1.8249 0.4875 -7.2529 45 1 1.2137 2.0926 -7.7440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691223474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:21 Heat of formation + Delta-G solvation = -48.980552 kcal Electronic energy + Delta-G solvation = -21835.365594 eV Core-core repulsion = 18658.719001 eV Total energy + Delta-G solvation = -3176.646593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97345 -39.62378 -37.16216 -36.09960 -34.91717 -32.99538 -31.85793 -30.51934 -29.29406 -28.53515 -25.72223 -24.74973 -24.36669 -22.07528 -21.24242 -20.85492 -19.68646 -19.40390 -17.89884 -17.24563 -16.58611 -16.56221 -16.03864 -15.85521 -15.77371 -14.95727 -14.79425 -14.66804 -14.36363 -14.24384 -13.96630 -13.71148 -13.68361 -13.29801 -13.13004 -13.09887 -12.80911 -12.56191 -12.25117 -12.17474 -11.94899 -11.88306 -11.79232 -11.77333 -11.65476 -11.54166 -11.40954 -10.95623 -10.47753 -10.16758 -9.76998 -9.27633 -8.03160 -5.34503 0.45512 1.35765 1.37478 1.44662 2.32990 2.38301 2.46561 3.27550 3.59271 3.68850 3.75548 3.84900 3.91480 4.04812 4.25398 4.42574 4.49053 4.51430 4.53612 4.59606 4.65136 4.68069 4.71132 4.75826 4.81552 4.85013 4.91985 5.03245 5.05257 5.11843 5.12485 5.21112 5.24804 5.35583 5.41757 5.47954 5.53277 5.57584 5.64760 5.73538 5.80603 6.22671 6.69840 7.08813 7.37863 7.88060 8.04715 9.18774 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025007 B = 0.003216 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.412148 B = 8705.595309 C = 9294.440797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 C -0.027 4.027 4 C -0.123 4.123 5 C -0.242 4.242 6 C 0.530 3.470 7 O -0.576 6.576 8 N -0.714 5.714 9 C 0.135 3.865 10 C -0.085 4.085 11 H 0.109 0.891 12 C -0.106 4.106 13 C -0.141 4.141 14 C 0.165 3.835 15 H 0.045 0.955 16 N -0.750 5.750 17 C -0.224 4.224 18 H 0.058 0.942 19 C -0.066 4.066 20 N -0.985 5.985 21 Si 0.951 3.049 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.257 1.257 25 C -0.119 4.119 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.414 0.586 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.362 0.638 43 H 0.257 0.743 44 H 0.057 0.943 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 11.173 28.474 31.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 C -0.029 4.029 4 C -0.179 4.179 5 C -0.263 4.263 6 C 0.322 3.678 7 O -0.459 6.459 8 N -0.365 5.365 9 C 0.011 3.989 10 C -0.104 4.104 11 H 0.127 0.873 12 C -0.144 4.144 13 C -0.181 4.181 14 C 0.057 3.943 15 H 0.063 0.937 16 N -0.393 5.393 17 C -0.355 4.355 18 H 0.076 0.924 19 C -0.257 4.257 20 N -0.636 5.636 21 Si 0.779 3.221 22 H -0.206 1.206 23 H -0.223 1.223 24 H -0.182 1.182 25 C -0.158 4.158 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.172 0.828 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.195 0.805 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.547 10.530 28.237 31.325 hybrid contribution 0.444 -1.063 -0.485 1.250 sum -8.103 9.467 27.752 30.421 Atomic orbital electron populations 1.21461 0.94318 1.01476 1.01080 1.21015 0.97161 0.93738 1.02884 1.22823 0.89191 0.94991 0.95888 1.21055 1.03679 1.00474 0.92734 1.22501 1.09723 1.03416 0.90630 1.19158 0.79079 0.84091 0.85519 1.90725 1.42001 1.25161 1.87978 1.45820 1.57253 1.28448 1.05007 1.21244 0.99557 0.95735 0.82398 1.22118 0.95400 1.00525 0.92332 0.87315 1.22463 0.94936 1.00988 0.95990 1.22943 0.98933 1.00196 0.96038 1.21115 0.92890 0.85521 0.94768 0.93677 1.42966 1.70215 1.05075 1.21066 1.19073 1.27423 0.93732 0.95283 0.92389 1.25442 1.01411 1.00517 0.98310 1.69871 1.47119 1.24051 1.22583 0.85471 0.77275 0.79916 0.79477 1.20554 1.22306 1.18226 1.22409 0.97928 1.01228 0.94198 0.93059 0.91807 0.94138 0.90855 0.90694 0.89153 0.90327 0.89673 0.82758 0.74900 0.92038 0.93793 0.89388 0.93660 0.94211 0.90432 0.80490 0.93450 0.92460 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.45 71.98 0.68 -1.71 16 2 C -0.11 -2.11 5.32 29.85 0.16 -1.95 16 3 C -0.03 -0.41 5.36 -17.62 -0.09 -0.50 16 4 C -0.12 -0.96 10.05 71.24 0.72 -0.25 16 5 C -0.24 -3.84 9.63 23.43 0.23 -3.61 16 6 C 0.53 12.03 7.61 86.57 0.66 12.69 16 7 O -0.58 -17.40 11.67 -4.07 -0.05 -17.45 16 8 N -0.71 -13.51 5.44 -466.70 -2.54 -16.05 16 9 C 0.13 3.09 4.96 86.38 0.43 3.52 16 10 C -0.08 -1.81 2.89 -9.72 -0.03 -1.84 16 11 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 12 C -0.11 -2.61 6.19 31.88 0.20 -2.41 16 13 C -0.14 -4.46 6.54 31.67 0.21 -4.25 16 14 C 0.16 6.02 3.55 45.72 0.16 6.18 16 15 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 16 N -0.75 -35.24 4.88 -319.53 -1.56 -36.80 16 17 C -0.22 -12.91 10.44 84.03 0.88 -12.03 16 18 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.99 -64.26 13.97 21.65 0.30 -63.96 16 21 Si 0.95 47.10 27.74 68.60 1.90 49.01 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 24 H -0.26 -11.75 6.52 99.48 0.65 -11.10 16 25 C -0.12 -3.31 6.14 31.32 0.19 -3.12 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 0.95 6.91 -2.39 -0.02 0.93 16 29 H 0.07 1.90 5.57 -2.39 -0.01 1.88 16 30 H 0.07 1.14 8.06 -2.39 -0.02 1.12 16 31 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.08 0.51 8.06 -2.39 -0.02 0.49 16 33 H 0.08 0.45 8.06 -2.39 -0.02 0.43 16 34 H 0.15 1.43 8.04 -2.91 -0.02 1.40 16 35 H 0.41 5.21 8.42 -92.71 -0.78 4.43 16 36 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.04 1.24 8.02 -2.38 -0.02 1.22 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.32 7.96 -2.38 -0.02 1.30 16 40 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 41 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.36 16.68 5.38 -92.70 -0.50 16.18 16 43 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 44 H 0.06 1.75 7.31 -2.39 -0.02 1.74 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.14 357.48 2.53 -71.60 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.37 Total: 26.41 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 4.85 Total: -12.76 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -3.80 Total: -116.81 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.90 Total: 49.01 kcal Total: -74.14 2.53 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691223474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.622 kcal (2) G-P(sol) polarization free energy of solvation -74.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds