Wall clock time and date at job start Fri Apr 10 2020 17:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50708 * 119.99681 * 2 1 4 4 C 1.52997 * 109.47141 * 0.02562 * 3 2 1 5 5 C 1.52992 * 109.47025 * 239.99969 * 3 2 1 6 6 C 1.53006 * 109.46735 * 120.00142 * 3 2 1 7 7 C 1.50699 * 109.46866 * 180.02562 * 6 3 2 8 8 O 1.21282 * 120.00040 * 359.97438 * 7 6 3 9 9 N 1.34779 * 120.00033 * 180.02562 * 7 6 3 10 10 C 1.46500 * 120.00165 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46993 * 179.97438 * 10 9 7 12 12 H 1.08995 * 112.85097 * 43.80479 * 11 10 9 13 13 C 1.53781 * 113.61251 * 174.99952 * 11 10 9 14 14 C 1.53775 * 87.08122 * 139.98088 * 13 11 10 15 15 H 1.09005 * 113.61926 * 89.11692 * 14 13 11 16 16 N 1.46505 * 113.61817 * 219.93398 * 14 13 11 17 17 C 1.36932 * 120.00420 * 204.99972 * 16 14 13 18 18 H 1.07999 * 119.99753 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00239 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99645 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47260 * 59.99533 * 21 19 17 23 23 H 1.48494 * 109.46972 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46886 * 300.00017 * 21 19 17 25 25 C 1.53772 * 87.08233 * 334.56777 * 14 13 11 26 26 H 1.08001 * 120.00367 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99585 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00367 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47153 * 299.99670 * 4 3 2 30 30 H 1.09001 * 109.46832 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47261 * 59.99842 * 4 3 2 32 32 H 1.09001 * 109.47066 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.47747 * 300.00019 * 5 3 2 34 34 H 1.09002 * 109.47103 * 60.00431 * 5 3 2 35 35 H 1.08993 * 109.46955 * 300.00223 * 6 3 2 36 36 H 1.09000 * 109.47050 * 60.00052 * 6 3 2 37 37 H 0.96996 * 119.99850 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.47197 * 300.00087 * 10 9 7 39 39 H 1.09004 * 109.46923 * 59.99390 * 10 9 7 40 40 H 1.09000 * 113.61816 * 254.53145 * 13 11 10 41 41 H 1.09007 * 113.61545 * 25.43149 * 13 11 10 42 42 H 0.97003 * 119.99117 * 25.00074 * 16 14 13 43 43 H 0.97003 * 119.99701 * 180.02562 * 20 19 17 44 44 H 1.09006 * 113.61796 * 270.87993 * 25 14 13 45 45 H 1.09003 * 113.61783 * 139.97958 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0691 2.4681 0.0006 5 6 2.9430 1.3863 -1.2492 6 6 2.9431 1.3862 1.2493 7 6 3.6960 2.6916 1.2497 8 8 3.5444 3.4794 0.3400 9 7 4.5387 2.9832 2.2603 10 6 5.2711 4.2520 2.2604 11 6 6.1506 4.3331 3.5096 12 1 6.6783 3.4022 3.7169 13 6 7.0559 5.5756 3.5461 14 6 6.7352 5.6683 5.0472 15 1 7.4225 5.1026 5.6763 16 7 6.5293 7.0397 5.5198 17 6 6.7437 7.3497 6.8362 18 1 7.0650 6.5833 7.5260 19 6 6.5491 8.6492 7.2839 20 7 6.1580 9.5832 6.4431 21 14 6.8422 9.0722 9.0796 22 1 8.2543 8.7786 9.4333 23 1 6.5670 10.5148 9.2996 24 1 5.9389 8.2596 9.9334 25 6 5.4289 4.9200 4.7341 26 1 -0.5401 0.9353 0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 0.4422 2.4105 -0.8891 30 1 1.6141 3.4120 0.0011 31 1 0.4428 2.4101 0.8909 32 1 3.4883 2.3301 -1.2490 33 1 3.6514 0.5579 -1.2493 34 1 2.3163 1.3286 -2.1392 35 1 2.3164 1.3284 2.1392 36 1 3.6514 0.5577 1.2492 37 1 4.6602 2.3531 2.9876 38 1 5.8975 4.3100 1.3702 39 1 4.5627 5.0805 2.2607 40 1 8.1033 5.3592 3.3359 41 1 6.6709 6.4136 2.9648 42 1 6.2411 7.7280 4.9001 43 1 6.0224 10.4913 6.7558 44 1 4.5990 5.5786 4.4777 45 1 5.1627 4.1740 5.4831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691444622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:28 Heat of formation + Delta-G solvation = 2.313986 kcal Electronic energy + Delta-G solvation = -21597.655557 eV Core-core repulsion = 18423.233262 eV Total energy + Delta-G solvation = -3174.422295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32990 -38.69759 -37.24225 -34.65969 -33.29784 -31.55309 -30.35425 -28.83117 -27.39899 -26.60991 -25.09360 -23.87834 -22.68488 -21.04323 -20.48431 -19.03759 -18.39428 -17.18490 -16.96744 -16.17978 -15.69161 -15.49537 -14.97375 -14.72736 -14.44560 -14.16542 -13.74733 -13.60013 -13.30725 -12.94303 -12.86293 -12.24935 -11.92598 -11.89290 -11.84029 -11.53011 -11.35481 -11.28017 -11.20125 -11.10305 -10.84098 -10.81127 -10.52872 -10.21753 -10.14251 -9.82921 -9.65660 -9.59986 -9.39775 -8.97483 -8.86864 -6.97276 -5.78908 -3.07850 2.02001 2.60240 3.19598 3.42504 3.46923 3.48160 4.44957 4.54062 4.57608 4.71638 4.88499 4.96636 5.02650 5.05468 5.15956 5.23819 5.32632 5.42313 5.46004 5.50850 5.56021 5.65550 5.81622 5.84034 5.85366 5.85749 5.92429 5.97475 6.08570 6.20311 6.26641 6.30017 6.33836 6.35447 6.39675 6.55333 6.56472 6.60065 6.82522 7.10542 7.48766 7.67614 8.22907 8.39683 9.50556 10.08929 10.43130 11.43423 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034772 B = 0.002558 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.051366 B =10941.841694 C =11157.840066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.019 4.019 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.130 4.130 7 C 0.510 3.490 8 O -0.534 6.534 9 N -0.726 5.726 10 C 0.132 3.868 11 C -0.127 4.127 12 H 0.087 0.913 13 C -0.143 4.143 14 C 0.166 3.834 15 H 0.075 0.925 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.161 4.161 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.078 0.922 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 -20.387 -12.504 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.163 4.163 3 C -0.020 4.020 4 C -0.213 4.213 5 C -0.206 4.206 6 C -0.170 4.170 7 C 0.297 3.703 8 O -0.412 6.412 9 N -0.377 5.377 10 C 0.009 3.991 11 C -0.147 4.147 12 H 0.106 0.894 13 C -0.182 4.182 14 C 0.053 3.947 15 H 0.093 0.907 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.202 4.202 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.874 -19.732 -12.947 24.581 hybrid contribution 0.023 -0.002 1.205 1.205 sum -6.851 -19.734 -11.742 23.963 Atomic orbital electron populations 1.24027 0.96209 1.02086 1.01032 1.22954 0.95942 0.97586 0.99863 1.19366 0.94943 0.93233 0.94451 1.22191 0.98550 0.99742 1.00865 1.22052 0.99196 1.03553 0.95811 1.21717 0.99285 0.95811 1.00168 1.20619 0.79350 0.88527 0.81777 1.90581 1.64394 1.50716 1.35543 1.46129 1.44929 1.21591 1.25093 1.21422 0.94337 0.85275 0.98101 1.22635 0.98222 0.98814 0.94983 0.89445 1.23448 0.98331 0.96296 1.00154 1.21517 0.93838 0.87668 0.91630 0.90715 1.42407 1.79815 1.04536 1.08299 1.19255 1.38498 0.93816 0.86052 0.91165 1.24775 1.02206 0.96026 0.97920 1.69652 1.52841 1.01793 1.33744 0.86262 0.77930 0.77148 0.84802 1.21234 1.21672 1.21245 1.23944 1.00838 0.99766 0.95625 0.87761 0.88785 0.87581 0.92852 0.89392 0.93208 0.89384 0.93492 0.93049 0.88902 0.88982 0.76687 0.91845 0.91287 0.92037 0.90124 0.78065 0.93381 0.90380 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 13.70 29.02 0.40 -1.08 16 2 C -0.15 -1.14 8.76 -36.02 -0.32 -1.45 16 3 C -0.02 -0.18 0.74 -155.66 -0.11 -0.29 16 4 C -0.16 -1.60 6.83 37.16 0.25 -1.34 16 5 C -0.15 -1.45 8.16 37.15 0.30 -1.15 16 6 C -0.13 -1.09 4.75 -27.88 -0.13 -1.22 16 7 C 0.51 5.81 7.24 -10.99 -0.08 5.73 16 8 O -0.53 -7.80 11.35 5.56 0.06 -7.73 16 9 N -0.73 -7.68 5.56 -60.30 -0.33 -8.01 16 10 C 0.13 1.67 5.51 -4.04 -0.02 1.65 16 11 C -0.13 -1.66 3.75 -89.81 -0.34 -1.99 16 12 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.14 -2.24 7.39 -25.92 -0.19 -2.43 16 14 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 15 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 16 N -0.71 -17.74 5.40 -52.64 -0.28 -18.02 16 17 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 21 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.16 -2.61 7.43 -25.93 -0.19 -2.80 16 26 H 0.10 0.80 5.69 -52.49 -0.30 0.50 16 27 H 0.09 0.59 8.06 -52.49 -0.42 0.16 16 28 H 0.11 0.71 8.06 -52.49 -0.42 0.28 16 29 H 0.05 0.51 7.50 -51.93 -0.39 0.12 16 30 H 0.09 1.11 5.51 -51.93 -0.29 0.83 16 31 H 0.05 0.47 7.50 -51.93 -0.39 0.08 16 32 H 0.09 1.06 5.51 -51.93 -0.29 0.77 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.40 3.25 8.47 -40.82 -0.35 2.91 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 42 H 0.39 10.23 7.92 -40.82 -0.32 9.90 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -31.02 357.86 -8.19 -39.21 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.75 Total: 10.26 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -0.98 Total: -10.90 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.11 Total: -53.48 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.06 Total: -7.73 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.02 -8.19 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691444622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.528 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds