Wall clock time and date at job start Fri Apr 10 2020 17:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50708 * 119.99681 * 2 1 4 4 C 1.52997 * 109.47141 * 0.02562 * 3 2 1 5 5 C 1.52992 * 109.47025 * 239.99969 * 3 2 1 6 6 C 1.53006 * 109.46735 * 120.00142 * 3 2 1 7 7 C 1.50699 * 109.46866 * 180.02562 * 6 3 2 8 8 O 1.21282 * 120.00040 * 359.97438 * 7 6 3 9 9 N 1.34779 * 120.00033 * 180.02562 * 7 6 3 10 10 C 1.46500 * 120.00165 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46993 * 179.97438 * 10 9 7 12 12 H 1.08995 * 112.85097 * 43.80479 * 11 10 9 13 13 C 1.53781 * 113.61251 * 174.99952 * 11 10 9 14 14 C 1.53775 * 87.08122 * 139.98088 * 13 11 10 15 15 H 1.09005 * 113.61926 * 89.11692 * 14 13 11 16 16 N 1.46505 * 113.61817 * 219.93398 * 14 13 11 17 17 C 1.36932 * 120.00420 * 204.99972 * 16 14 13 18 18 H 1.07999 * 119.99753 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00239 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99645 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47260 * 59.99533 * 21 19 17 23 23 H 1.48494 * 109.46972 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46886 * 300.00017 * 21 19 17 25 25 C 1.53772 * 87.08233 * 334.56777 * 14 13 11 26 26 H 1.08001 * 120.00367 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99585 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00367 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47153 * 299.99670 * 4 3 2 30 30 H 1.09001 * 109.46832 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47261 * 59.99842 * 4 3 2 32 32 H 1.09001 * 109.47066 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.47747 * 300.00019 * 5 3 2 34 34 H 1.09002 * 109.47103 * 60.00431 * 5 3 2 35 35 H 1.08993 * 109.46955 * 300.00223 * 6 3 2 36 36 H 1.09000 * 109.47050 * 60.00052 * 6 3 2 37 37 H 0.96996 * 119.99850 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.47197 * 300.00087 * 10 9 7 39 39 H 1.09004 * 109.46923 * 59.99390 * 10 9 7 40 40 H 1.09000 * 113.61816 * 254.53145 * 13 11 10 41 41 H 1.09007 * 113.61545 * 25.43149 * 13 11 10 42 42 H 0.97003 * 119.99117 * 25.00074 * 16 14 13 43 43 H 0.97003 * 119.99701 * 180.02562 * 20 19 17 44 44 H 1.09006 * 113.61796 * 270.87993 * 25 14 13 45 45 H 1.09003 * 113.61783 * 139.97958 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0691 2.4681 0.0006 5 6 2.9430 1.3863 -1.2492 6 6 2.9431 1.3862 1.2493 7 6 3.6960 2.6916 1.2497 8 8 3.5444 3.4794 0.3400 9 7 4.5387 2.9832 2.2603 10 6 5.2711 4.2520 2.2604 11 6 6.1506 4.3331 3.5096 12 1 6.6783 3.4022 3.7169 13 6 7.0559 5.5756 3.5461 14 6 6.7352 5.6683 5.0472 15 1 7.4225 5.1026 5.6763 16 7 6.5293 7.0397 5.5198 17 6 6.7437 7.3497 6.8362 18 1 7.0650 6.5833 7.5260 19 6 6.5491 8.6492 7.2839 20 7 6.1580 9.5832 6.4431 21 14 6.8422 9.0722 9.0796 22 1 8.2543 8.7786 9.4333 23 1 6.5670 10.5148 9.2996 24 1 5.9389 8.2596 9.9334 25 6 5.4289 4.9200 4.7341 26 1 -0.5401 0.9353 0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 0.4422 2.4105 -0.8891 30 1 1.6141 3.4120 0.0011 31 1 0.4428 2.4101 0.8909 32 1 3.4883 2.3301 -1.2490 33 1 3.6514 0.5579 -1.2493 34 1 2.3163 1.3286 -2.1392 35 1 2.3164 1.3284 2.1392 36 1 3.6514 0.5577 1.2492 37 1 4.6602 2.3531 2.9876 38 1 5.8975 4.3100 1.3702 39 1 4.5627 5.0805 2.2607 40 1 8.1033 5.3592 3.3359 41 1 6.6709 6.4136 2.9648 42 1 6.2411 7.7280 4.9001 43 1 6.0224 10.4913 6.7558 44 1 4.5990 5.5786 4.4777 45 1 5.1627 4.1740 5.4831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691444622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:27 Heat of formation + Delta-G solvation = -17.210226 kcal Electronic energy + Delta-G solvation = -21598.502190 eV Core-core repulsion = 18423.233262 eV Total energy + Delta-G solvation = -3175.268928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22410 -39.97805 -38.05613 -35.96922 -34.96548 -32.35879 -32.03211 -29.83734 -28.18134 -27.73046 -26.44926 -25.73303 -23.48070 -22.35213 -21.44764 -20.40203 -19.07641 -19.01822 -17.94071 -17.23676 -16.61922 -16.52257 -16.26290 -16.04787 -15.53569 -15.25487 -15.03027 -14.89246 -14.56054 -14.16038 -13.62340 -13.40890 -13.23461 -13.08432 -12.93363 -12.89975 -12.64444 -12.62227 -12.29685 -12.18467 -12.06794 -11.99330 -11.80655 -11.56322 -11.54338 -11.46153 -11.05124 -10.81185 -10.41870 -10.20558 -9.94068 -8.97592 -7.94278 -5.22717 1.44771 1.47203 1.50336 1.56456 1.73890 2.32647 2.57140 3.37450 3.67933 3.76791 3.77458 3.86646 3.94578 4.03467 4.23763 4.26797 4.36819 4.42151 4.46984 4.49488 4.58448 4.68533 4.77156 4.81157 4.85647 4.97735 4.98941 5.00269 5.06516 5.08435 5.12912 5.21677 5.24309 5.38571 5.43721 5.48704 5.52865 5.66719 5.75641 5.81516 5.98881 6.27921 6.67283 7.33215 7.39298 8.11875 8.33549 9.29147 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034772 B = 0.002558 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.051366 B =10941.841694 C =11157.840066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C -0.021 4.021 4 C -0.154 4.154 5 C -0.146 4.146 6 C -0.123 4.123 7 C 0.505 3.495 8 O -0.571 6.571 9 N -0.718 5.718 10 C 0.139 3.861 11 C -0.094 4.094 12 H 0.122 0.878 13 C -0.138 4.138 14 C 0.142 3.858 15 H 0.081 0.919 16 N -0.731 5.731 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.974 3.026 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.277 1.277 25 C -0.153 4.153 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.415 0.585 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.053 0.947 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 -23.680 -11.916 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C -0.022 4.022 4 C -0.211 4.211 5 C -0.203 4.203 6 C -0.162 4.162 7 C 0.293 3.707 8 O -0.451 6.451 9 N -0.370 5.370 10 C 0.015 3.985 11 C -0.113 4.113 12 H 0.140 0.860 13 C -0.177 4.177 14 C 0.033 3.967 15 H 0.099 0.901 16 N -0.368 5.368 17 C -0.375 4.375 18 H 0.097 0.903 19 C -0.273 4.273 20 N -0.624 5.624 21 Si 0.803 3.197 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.203 1.203 25 C -0.193 4.193 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.142 0.858 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.251 0.749 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.573 -23.115 -12.347 27.017 hybrid contribution -0.083 0.969 0.951 1.360 sum -6.656 -22.146 -11.396 25.780 Atomic orbital electron populations 1.24152 0.96322 1.02540 1.00519 1.22952 0.95971 0.97294 1.00278 1.19367 0.94759 0.93499 0.94528 1.22134 0.98680 0.99119 1.01152 1.21985 0.99365 1.02673 0.96277 1.21746 0.99545 0.94624 1.00333 1.21234 0.79086 0.89249 0.81108 1.90593 1.65438 1.52106 1.36997 1.46001 1.44485 1.20950 1.25570 1.21149 0.93827 0.85672 0.97822 1.22461 0.96669 0.98863 0.93318 0.85989 1.23332 0.99978 0.97284 0.97144 1.21970 0.95760 0.85333 0.93642 0.90097 1.42638 1.80250 1.06553 1.07360 1.19704 1.36457 0.93936 0.87387 0.90268 1.25617 1.03323 0.96233 1.02091 1.69823 1.55139 1.01808 1.35604 0.85199 0.78196 0.76295 0.80015 1.20211 1.22459 1.20323 1.23711 0.98666 0.99394 0.97571 0.88456 0.87305 0.85799 0.92779 0.92206 0.92727 0.91969 0.92037 0.93224 0.87371 0.86203 0.74865 0.91899 0.93959 0.90351 0.91683 0.79717 0.94112 0.92821 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.53 13.70 67.79 0.93 -1.60 16 2 C -0.15 -1.90 8.76 25.65 0.22 -1.67 16 3 C -0.02 -0.35 0.74 -52.93 -0.04 -0.39 16 4 C -0.15 -3.10 6.83 71.98 0.49 -2.60 16 5 C -0.15 -2.69 8.16 71.98 0.59 -2.10 16 6 C -0.12 -1.73 4.75 29.85 0.14 -1.59 16 7 C 0.50 10.80 7.24 87.66 0.63 11.44 16 8 O -0.57 -16.84 11.35 -3.04 -0.03 -16.87 16 9 N -0.72 -13.62 5.56 -463.06 -2.57 -16.20 16 10 C 0.14 3.37 5.51 86.38 0.48 3.85 16 11 C -0.09 -2.22 3.75 -10.27 -0.04 -2.26 16 12 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.14 -4.18 7.39 31.12 0.23 -3.95 16 14 C 0.14 5.33 4.48 45.51 0.20 5.53 16 15 H 0.08 2.92 8.10 -2.38 -0.02 2.90 16 16 N -0.73 -36.88 5.40 -320.46 -1.73 -38.61 16 17 C -0.24 -13.45 9.97 84.04 0.84 -12.61 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 20 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 21 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 C -0.15 -4.77 7.43 31.12 0.23 -4.54 16 26 H 0.10 1.36 5.69 -2.91 -0.02 1.34 16 27 H 0.11 1.06 8.06 -2.91 -0.02 1.04 16 28 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 29 H 0.05 1.03 7.50 -2.39 -0.02 1.01 16 30 H 0.06 1.57 5.51 -2.39 -0.01 1.56 16 31 H 0.05 1.00 7.50 -2.38 -0.02 0.99 16 32 H 0.06 1.50 5.51 -2.39 -0.01 1.49 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 5.29 8.47 -92.71 -0.79 4.50 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.04 1.26 7.84 -2.39 -0.02 1.25 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 2.19 8.08 -2.38 -0.02 2.17 16 42 H 0.37 20.44 7.92 -92.71 -0.73 19.70 16 43 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.05 1.96 7.90 -2.38 -0.02 1.94 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -69.20 357.86 2.80 -66.40 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.55 Total: 33.95 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.38 Total: -16.70 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -4.02 Total: -114.96 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.03 Total: -16.87 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -69.20 2.80 -66.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691444622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.194 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds