Wall clock time and date at job start Fri Apr 10 2020 17:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50690 * 119.99941 * 2 1 4 4 C 1.53002 * 109.47349 * 359.97438 * 3 2 1 5 5 C 1.53004 * 109.47107 * 240.00157 * 3 2 1 6 6 C 1.52998 * 109.47443 * 120.00185 * 3 2 1 7 7 C 1.50698 * 109.47665 * 180.02562 * 6 3 2 8 8 O 1.21285 * 119.99890 * 359.97438 * 7 6 3 9 9 N 1.34772 * 120.00205 * 179.97438 * 7 6 3 10 10 C 1.46501 * 120.00311 * 0.02562 * 9 7 6 11 11 C 1.46505 * 120.00026 * 179.97438 * 9 7 6 12 12 H 1.08997 * 110.88480 * 3.88291 * 11 9 7 13 13 C 1.55151 * 111.00501 * 240.00218 * 11 9 7 14 14 C 1.54328 * 102.94392 * 277.42753 * 13 11 9 15 15 N 1.47027 * 107.26556 * 337.80897 * 14 13 11 16 16 C 1.36941 * 125.64143 * 178.98732 * 15 14 13 17 17 H 1.08005 * 119.99568 * 174.87025 * 16 15 14 18 18 C 1.38803 * 120.00339 * 354.86936 * 16 15 14 19 19 N 1.31621 * 120.00352 * 7.05762 * 18 16 15 20 20 Si 1.86806 * 120.00133 * 187.05797 * 18 16 15 21 21 H 1.48501 * 109.47083 * 94.98718 * 20 18 16 22 22 H 1.48496 * 109.47260 * 214.98632 * 20 18 16 23 23 H 1.48502 * 109.47020 * 334.98832 * 20 18 16 24 24 C 1.47423 * 108.70588 * 358.93800 * 15 14 13 25 25 H 1.07997 * 119.99923 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99679 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.99633 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46841 * 179.97438 * 4 3 2 29 29 H 1.08991 * 109.47159 * 300.00295 * 4 3 2 30 30 H 1.08999 * 109.46853 * 60.00166 * 4 3 2 31 31 H 1.09006 * 109.46820 * 300.00074 * 5 3 2 32 32 H 1.08999 * 109.47047 * 59.99554 * 5 3 2 33 33 H 1.09001 * 109.47305 * 180.02562 * 5 3 2 34 34 H 1.09009 * 109.46883 * 299.99924 * 6 3 2 35 35 H 1.09003 * 109.47310 * 59.99102 * 6 3 2 36 36 H 1.08999 * 109.47328 * 89.99289 * 10 9 7 37 37 H 1.09001 * 109.47050 * 210.00129 * 10 9 7 38 38 H 1.09004 * 109.46559 * 329.99441 * 10 9 7 39 39 H 1.09005 * 110.72331 * 35.78975 * 13 11 9 40 40 H 1.09004 * 110.72111 * 159.06413 * 13 11 9 41 41 H 1.09000 * 109.88534 * 97.22267 * 14 13 11 42 42 H 1.08994 * 109.88421 * 218.39217 * 14 13 11 43 43 H 0.97000 * 120.00439 * 179.97438 * 19 18 16 44 44 H 1.09001 * 110.36609 * 265.29108 * 24 15 14 45 45 H 1.08995 * 110.36188 * 142.96648 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9432 1.3861 1.2492 7 6 3.6962 2.6915 1.2495 8 8 3.5446 3.4793 0.3399 9 7 4.5381 2.9835 2.2606 10 6 4.7217 2.0318 3.3592 11 6 5.2706 4.2523 2.2607 12 1 4.9735 4.8725 1.4150 13 6 6.8030 4.0098 2.2613 14 6 7.1135 3.7640 3.7530 15 7 6.0260 4.3749 4.5314 16 6 5.9160 4.3602 5.8963 17 1 5.1215 4.9093 6.3799 18 6 6.8253 3.6397 6.6583 19 7 7.8721 3.0857 6.0841 20 14 6.5635 3.4562 8.4988 21 1 5.8592 2.1781 8.7736 22 1 7.8788 3.4547 9.1881 23 1 5.7444 4.5900 8.9977 24 6 5.0744 5.0066 3.5994 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.6144 3.4119 -0.0002 29 1 0.4430 2.4100 -0.8908 30 1 0.4423 2.4104 0.8891 31 1 3.6515 0.5575 -1.2493 32 1 2.3165 1.3283 -2.1392 33 1 3.4885 2.3299 -1.2491 34 1 2.3165 1.3284 2.1392 35 1 3.6515 0.5576 1.2493 36 1 5.5383 1.3514 3.1178 37 1 4.9592 2.5745 4.2742 38 1 3.8039 1.4614 3.5028 39 1 7.0550 3.1326 1.6654 40 1 7.3329 4.8900 1.8971 41 1 7.1551 2.6931 3.9514 42 1 8.0637 4.2290 4.0154 43 1 8.5078 2.5825 6.6166 44 1 5.3088 6.0641 3.4769 45 1 4.0528 4.8827 3.9585 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698559825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:34 Heat of formation + Delta-G solvation = 17.335269 kcal Electronic energy + Delta-G solvation = -23339.478994 eV Core-core repulsion = 20165.708071 eV Total energy + Delta-G solvation = -3173.770923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21067 -38.17003 -36.60126 -34.23043 -32.27288 -31.22857 -29.43849 -28.25832 -27.44625 -27.19264 -25.83532 -24.29371 -22.64587 -20.53131 -20.09607 -18.48054 -18.09330 -17.06914 -16.89177 -15.72938 -15.43005 -15.24895 -14.68755 -14.33113 -14.13078 -13.78109 -13.44727 -13.30173 -12.85648 -12.53203 -12.09728 -12.03388 -11.86309 -11.72903 -11.64601 -11.55722 -11.27165 -11.04819 -10.97514 -10.91923 -10.81428 -10.66533 -10.60527 -10.16824 -10.15781 -9.94912 -9.70684 -9.43986 -9.07833 -8.69246 -8.12609 -6.85453 -5.79715 -3.13206 2.20867 2.93744 3.34915 3.41570 3.43056 3.44242 4.43750 4.65281 4.78257 4.96568 5.10146 5.23810 5.34311 5.39104 5.40613 5.52641 5.59113 5.65262 5.71251 5.74945 5.79296 5.83957 5.89364 6.05478 6.07330 6.14872 6.16710 6.22241 6.35046 6.44867 6.50125 6.52763 6.53580 6.62089 6.67297 6.76001 6.81387 7.13218 7.50631 7.57095 7.76550 7.90188 8.17293 8.56044 9.14227 9.73938 10.39943 11.31414 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.004347 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.995389 B = 6440.280957 C = 6954.618072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C -0.020 4.020 4 C -0.155 4.155 5 C -0.148 4.148 6 C -0.126 4.126 7 C 0.512 3.488 8 O -0.549 6.549 9 N -0.588 5.588 10 C 0.060 3.940 11 C 0.123 3.877 12 H 0.099 0.901 13 C -0.155 4.155 14 C 0.174 3.826 15 N -0.603 5.603 16 C -0.233 4.233 17 H 0.078 0.922 18 C -0.003 4.003 19 N -0.917 5.917 20 Si 0.908 3.092 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.125 3.875 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.124 0.876 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.253 0.747 44 H 0.030 0.970 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 -5.185 -10.836 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.160 4.160 3 C -0.020 4.020 4 C -0.211 4.211 5 C -0.205 4.205 6 C -0.166 4.166 7 C 0.301 3.699 8 O -0.429 6.429 9 N -0.318 5.318 10 C -0.083 4.083 11 C 0.019 3.981 12 H 0.117 0.883 13 C -0.195 4.195 14 C 0.049 3.951 15 N -0.330 5.330 16 C -0.361 4.361 17 H 0.096 0.904 18 C -0.200 4.200 19 N -0.564 5.564 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.002 4.002 25 H 0.122 0.878 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.691 -4.856 -11.092 15.509 hybrid contribution 0.039 -0.407 1.174 1.244 sum -9.652 -5.263 -9.917 14.806 Atomic orbital electron populations 1.23988 0.96184 1.01917 1.01665 1.22989 0.95937 0.97753 0.99288 1.19376 0.94940 0.93011 0.94698 1.22173 0.98473 0.99951 1.00550 1.22046 0.99143 1.03686 0.95624 1.21702 0.99108 0.96249 0.99517 1.20564 0.79487 0.88362 0.81501 1.90507 1.65592 1.51012 1.35788 1.47759 1.42375 1.19308 1.22401 1.22270 0.99878 0.93255 0.92920 1.22219 0.91880 0.84813 0.99218 0.88303 1.23238 0.94654 1.00953 1.00610 1.21240 0.91298 0.98316 0.84238 1.44622 1.23063 1.63627 1.01666 1.19046 1.11322 1.25643 0.80130 0.90425 1.24793 0.97055 1.00090 0.98055 1.69985 1.12977 1.39253 1.34190 0.86155 0.77020 0.77904 0.85035 1.21563 1.21787 1.20659 1.21894 0.94380 0.94878 0.89027 0.87848 0.88904 0.87616 0.89317 0.93091 0.93367 0.93560 0.93288 0.89273 0.89081 0.89136 0.93269 0.85831 0.92783 0.92012 0.91523 0.92992 0.94201 0.93694 0.95264 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 13.70 29.01 0.40 -1.52 16 2 C -0.14 -1.47 8.76 -36.03 -0.32 -1.78 16 3 C -0.02 -0.24 0.74 -155.66 -0.11 -0.35 16 4 C -0.15 -1.90 6.83 37.16 0.25 -1.65 16 5 C -0.15 -1.82 8.16 37.16 0.30 -1.52 16 6 C -0.13 -1.59 3.30 -27.89 -0.09 -1.68 16 7 C 0.51 8.07 7.09 -10.99 -0.08 7.99 16 8 O -0.55 -9.61 10.73 5.55 0.06 -9.55 16 9 N -0.59 -9.95 2.91 -171.48 -0.50 -10.45 16 10 C 0.06 1.01 8.50 59.85 0.51 1.52 16 11 C 0.12 2.23 3.66 -65.78 -0.24 1.99 16 12 H 0.10 1.77 7.02 -51.93 -0.36 1.40 16 13 C -0.16 -2.89 6.48 -24.90 -0.16 -3.05 16 14 C 0.17 3.97 4.34 -3.06 -0.01 3.96 16 15 N -0.60 -14.33 1.87 -170.07 -0.32 -14.65 16 16 C -0.23 -6.11 9.78 -15.06 -0.15 -6.26 16 17 H 0.08 2.00 7.84 -52.48 -0.41 1.58 16 18 C 0.00 -0.08 5.48 -17.43 -0.10 -0.18 16 19 N -0.92 -25.46 10.36 55.49 0.57 -24.89 16 20 Si 0.91 21.14 29.56 -169.99 -5.02 16.11 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.12 2.53 6.40 -2.53 -0.02 2.51 16 25 H 0.10 0.98 5.69 -52.49 -0.30 0.68 16 26 H 0.09 0.76 8.06 -52.49 -0.42 0.33 16 27 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.09 1.30 5.51 -51.93 -0.29 1.01 16 29 H 0.05 0.57 7.50 -51.93 -0.39 0.18 16 30 H 0.05 0.56 7.49 -51.93 -0.39 0.17 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.30 5.51 -51.93 -0.29 1.01 16 34 H 0.09 1.09 7.40 -51.92 -0.38 0.70 16 35 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 36 H 0.05 0.82 7.90 -51.93 -0.41 0.41 16 37 H 0.12 2.58 4.74 -51.93 -0.25 2.34 16 38 H 0.05 0.77 6.44 -51.93 -0.33 0.43 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.28 6.26 -51.93 -0.33 0.96 16 42 H 0.04 1.03 7.60 -51.93 -0.39 0.64 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -27.90 338.26 -7.38 -35.28 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.46 Total: 3.05 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 0.19 Total: -0.01 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.24 Total: -49.98 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.06 Total: -9.55 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.90 -7.38 -35.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698559825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.611 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds