Wall clock time and date at job start Fri Apr 10 2020 17:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50690 * 119.99941 * 2 1 4 4 C 1.53002 * 109.47349 * 359.97438 * 3 2 1 5 5 C 1.53004 * 109.47107 * 240.00157 * 3 2 1 6 6 C 1.52998 * 109.47443 * 120.00185 * 3 2 1 7 7 C 1.50698 * 109.47665 * 180.02562 * 6 3 2 8 8 O 1.21285 * 119.99890 * 359.97438 * 7 6 3 9 9 N 1.34772 * 120.00205 * 179.97438 * 7 6 3 10 10 C 1.46501 * 120.00311 * 0.02562 * 9 7 6 11 11 C 1.46505 * 120.00026 * 179.97438 * 9 7 6 12 12 H 1.08997 * 110.88480 * 3.88291 * 11 9 7 13 13 C 1.55151 * 111.00501 * 240.00218 * 11 9 7 14 14 C 1.54328 * 102.94392 * 277.42753 * 13 11 9 15 15 N 1.47027 * 107.26556 * 337.80897 * 14 13 11 16 16 C 1.36941 * 125.64143 * 178.98732 * 15 14 13 17 17 H 1.08005 * 119.99568 * 174.87025 * 16 15 14 18 18 C 1.38803 * 120.00339 * 354.86936 * 16 15 14 19 19 N 1.31621 * 120.00352 * 7.05762 * 18 16 15 20 20 Si 1.86806 * 120.00133 * 187.05797 * 18 16 15 21 21 H 1.48501 * 109.47083 * 94.98718 * 20 18 16 22 22 H 1.48496 * 109.47260 * 214.98632 * 20 18 16 23 23 H 1.48502 * 109.47020 * 334.98832 * 20 18 16 24 24 C 1.47423 * 108.70588 * 358.93800 * 15 14 13 25 25 H 1.07997 * 119.99923 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99679 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.99633 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46841 * 179.97438 * 4 3 2 29 29 H 1.08991 * 109.47159 * 300.00295 * 4 3 2 30 30 H 1.08999 * 109.46853 * 60.00166 * 4 3 2 31 31 H 1.09006 * 109.46820 * 300.00074 * 5 3 2 32 32 H 1.08999 * 109.47047 * 59.99554 * 5 3 2 33 33 H 1.09001 * 109.47305 * 180.02562 * 5 3 2 34 34 H 1.09009 * 109.46883 * 299.99924 * 6 3 2 35 35 H 1.09003 * 109.47310 * 59.99102 * 6 3 2 36 36 H 1.08999 * 109.47328 * 89.99289 * 10 9 7 37 37 H 1.09001 * 109.47050 * 210.00129 * 10 9 7 38 38 H 1.09004 * 109.46559 * 329.99441 * 10 9 7 39 39 H 1.09005 * 110.72331 * 35.78975 * 13 11 9 40 40 H 1.09004 * 110.72111 * 159.06413 * 13 11 9 41 41 H 1.09000 * 109.88534 * 97.22267 * 14 13 11 42 42 H 1.08994 * 109.88421 * 218.39217 * 14 13 11 43 43 H 0.97000 * 120.00439 * 179.97438 * 19 18 16 44 44 H 1.09001 * 110.36609 * 265.29108 * 24 15 14 45 45 H 1.08995 * 110.36188 * 142.96648 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9432 1.3861 1.2492 7 6 3.6962 2.6915 1.2495 8 8 3.5446 3.4793 0.3399 9 7 4.5381 2.9835 2.2606 10 6 4.7217 2.0318 3.3592 11 6 5.2706 4.2523 2.2607 12 1 4.9735 4.8725 1.4150 13 6 6.8030 4.0098 2.2613 14 6 7.1135 3.7640 3.7530 15 7 6.0260 4.3749 4.5314 16 6 5.9160 4.3602 5.8963 17 1 5.1215 4.9093 6.3799 18 6 6.8253 3.6397 6.6583 19 7 7.8721 3.0857 6.0841 20 14 6.5635 3.4562 8.4988 21 1 5.8592 2.1781 8.7736 22 1 7.8788 3.4547 9.1881 23 1 5.7444 4.5900 8.9977 24 6 5.0744 5.0066 3.5994 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.6144 3.4119 -0.0002 29 1 0.4430 2.4100 -0.8908 30 1 0.4423 2.4104 0.8891 31 1 3.6515 0.5575 -1.2493 32 1 2.3165 1.3283 -2.1392 33 1 3.4885 2.3299 -1.2491 34 1 2.3165 1.3284 2.1392 35 1 3.6515 0.5576 1.2493 36 1 5.5383 1.3514 3.1178 37 1 4.9592 2.5745 4.2742 38 1 3.8039 1.4614 3.5028 39 1 7.0550 3.1326 1.6654 40 1 7.3329 4.8900 1.8971 41 1 7.1551 2.6931 3.9514 42 1 8.0637 4.2290 4.0154 43 1 8.5078 2.5825 6.6166 44 1 5.3088 6.0641 3.4769 45 1 4.0528 4.8827 3.9585 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698559825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:33 Heat of formation + Delta-G solvation = 3.716508 kcal Electronic energy + Delta-G solvation = -23340.069548 eV Core-core repulsion = 20165.708071 eV Total energy + Delta-G solvation = -3174.361477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47813 -39.57112 -37.77970 -35.77088 -34.05393 -32.15333 -31.17268 -29.70770 -28.72082 -28.14522 -27.37339 -26.07667 -23.65584 -21.94805 -21.83146 -19.80952 -19.02235 -18.86648 -18.21822 -17.08359 -16.65700 -16.65070 -16.21657 -15.64075 -15.49589 -15.18691 -14.75673 -14.56933 -14.13390 -13.85663 -13.57991 -13.47945 -13.36158 -13.08534 -12.91721 -12.79873 -12.76958 -12.60349 -12.46318 -12.11508 -11.99950 -11.94991 -11.87905 -11.83309 -11.69642 -11.50764 -11.46111 -10.66904 -10.34947 -10.19586 -9.57473 -8.77066 -7.82614 -5.16908 1.45235 1.49901 1.50731 1.59148 1.70009 2.14604 2.51819 3.36947 3.57442 3.69241 3.85696 3.93268 3.99059 4.05280 4.18999 4.34120 4.37684 4.46565 4.49857 4.64932 4.69288 4.72468 4.74719 4.80210 4.88489 4.91605 4.98550 5.00937 5.06288 5.10927 5.16057 5.21700 5.32636 5.49703 5.50293 5.58580 5.67107 5.71360 5.80554 5.83483 5.99471 6.21028 6.59776 7.13063 7.29279 7.78498 8.43661 9.27334 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.004347 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.995389 B = 6440.280957 C = 6954.618072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C -0.019 4.019 4 C -0.151 4.151 5 C -0.145 4.145 6 C -0.122 4.122 7 C 0.511 3.489 8 O -0.565 6.565 9 N -0.593 5.593 10 C 0.070 3.930 11 C 0.134 3.866 12 H 0.107 0.893 13 C -0.141 4.141 14 C 0.187 3.813 15 N -0.615 5.615 16 C -0.240 4.240 17 H 0.079 0.921 18 C -0.052 4.052 19 N -0.944 5.944 20 Si 0.970 3.030 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.273 1.273 24 C 0.126 3.874 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.001 0.999 43 H 0.247 0.753 44 H 0.034 0.966 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.479 -6.248 -11.438 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.169 4.169 3 C -0.019 4.019 4 C -0.208 4.208 5 C -0.202 4.202 6 C -0.161 4.161 7 C 0.301 3.699 8 O -0.446 6.446 9 N -0.324 5.324 10 C -0.073 4.073 11 C 0.029 3.971 12 H 0.125 0.875 13 C -0.180 4.180 14 C 0.062 3.938 15 N -0.341 5.341 16 C -0.369 4.369 17 H 0.096 0.904 18 C -0.246 4.246 19 N -0.592 5.592 20 Si 0.799 3.201 21 H -0.211 1.211 22 H -0.226 1.226 23 H -0.198 1.198 24 C 0.000 4.000 25 H 0.120 0.880 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.048 0.952 42 H 0.020 0.980 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.447 -5.909 -11.715 17.412 hybrid contribution 0.512 -0.027 1.309 1.406 sum -10.935 -5.936 -10.406 16.220 Atomic orbital electron populations 1.24152 0.96033 1.02694 1.00187 1.22942 0.96162 0.97207 1.00582 1.19357 0.94723 0.93829 0.93995 1.22111 0.98501 0.98930 1.01260 1.21982 0.99317 1.02588 0.96316 1.21755 0.99288 0.94581 1.00476 1.21131 0.78881 0.89243 0.80608 1.90523 1.65867 1.51898 1.36282 1.47811 1.42802 1.18855 1.22972 1.22080 1.01288 0.92781 0.91181 1.22027 0.91497 0.85527 0.98021 0.87516 1.23103 0.95355 1.02059 0.97523 1.20948 0.89582 0.96412 0.86817 1.44764 1.23994 1.63825 1.01551 1.19325 1.10941 1.25095 0.81527 0.90351 1.25479 0.97023 1.00340 1.01773 1.70173 1.13673 1.40131 1.35222 0.85194 0.76410 0.78014 0.80502 1.21122 1.22603 1.19794 1.21977 0.93494 0.95114 0.89459 0.88023 0.87249 0.86351 0.91860 0.92243 0.92818 0.92718 0.92629 0.91762 0.87972 0.87618 0.93437 0.89596 0.89874 0.90896 0.90186 0.95249 0.98039 0.94389 0.94813 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 13.70 67.77 0.93 -2.16 16 2 C -0.15 -2.65 8.76 25.64 0.22 -2.43 16 3 C -0.02 -0.40 0.74 -52.93 -0.04 -0.44 16 4 C -0.15 -3.46 6.83 71.98 0.49 -2.96 16 5 C -0.14 -3.30 8.16 71.98 0.59 -2.71 16 6 C -0.12 -2.76 3.30 29.85 0.10 -2.66 16 7 C 0.51 15.27 7.09 87.66 0.62 15.89 16 8 O -0.56 -19.16 10.73 -3.05 -0.03 -19.19 16 9 N -0.59 -19.34 2.91 -814.83 -2.37 -21.71 16 10 C 0.07 2.29 8.50 127.77 1.09 3.38 16 11 C 0.13 4.74 3.66 46.38 0.17 4.91 16 12 H 0.11 3.67 7.02 -2.39 -0.02 3.65 16 13 C -0.14 -5.18 6.48 31.78 0.21 -4.97 16 14 C 0.19 8.76 4.34 86.73 0.38 9.13 16 15 N -0.61 -29.57 1.87 -691.99 -1.30 -30.86 16 16 C -0.24 -12.70 9.78 84.03 0.82 -11.87 16 17 H 0.08 4.03 7.84 -2.91 -0.02 4.01 16 18 C -0.05 -2.81 5.48 84.86 0.46 -2.34 16 19 N -0.94 -53.72 10.36 21.65 0.22 -53.50 16 20 Si 0.97 43.78 29.56 68.60 2.03 45.81 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C 0.13 5.03 6.40 86.85 0.56 5.58 16 25 H 0.10 1.65 5.69 -2.91 -0.02 1.63 16 26 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 27 H 0.12 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.06 1.79 5.51 -2.39 -0.01 1.78 16 29 H 0.06 1.22 7.50 -2.39 -0.02 1.21 16 30 H 0.05 1.14 7.49 -2.39 -0.02 1.12 16 31 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.80 5.51 -2.39 -0.01 1.79 16 34 H 0.10 2.13 7.40 -2.38 -0.02 2.11 16 35 H 0.11 2.12 8.11 -2.39 -0.02 2.10 16 36 H 0.05 1.56 7.90 -2.39 -0.02 1.54 16 37 H 0.09 3.59 4.74 -2.39 -0.01 3.57 16 38 H 0.08 2.19 6.44 -2.39 -0.02 2.18 16 39 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 40 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 41 H 0.03 1.50 6.26 -2.39 -0.01 1.48 16 42 H 0.00 0.07 7.60 -2.39 -0.02 0.05 16 43 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -60.42 338.26 6.10 -54.32 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.95 Total: 18.79 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.59 Total: 6.34 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.44 Total: -106.07 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.03 Total: -19.19 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -60.42 6.10 -54.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698559825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.041 kcal (2) G-P(sol) polarization free energy of solvation -60.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds