Wall clock time and date at job start Fri Apr 10 2020 17:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46919 * 2 1 4 4 C 1.50692 * 120.00249 * 275.00077 * 3 2 1 5 5 C 1.33002 * 119.99813 * 95.00198 * 3 2 1 6 6 C 1.47093 * 119.99976 * 185.65955 * 5 3 2 7 7 O 1.21618 * 120.00026 * 5.61199 * 6 5 3 8 8 N 1.34777 * 120.00081 * 185.60716 * 6 5 3 9 9 C 1.46498 * 119.99830 * 354.85653 * 8 6 5 10 10 C 1.53000 * 109.47048 * 84.32244 * 9 8 6 11 11 C 1.46504 * 119.99967 * 174.85406 * 8 6 5 12 12 H 1.08999 * 110.88959 * 0.21580 * 11 8 6 13 13 C 1.55154 * 111.00550 * 236.33586 * 11 8 6 14 14 C 1.54328 * 102.94036 * 277.43067 * 13 11 8 15 15 N 1.47018 * 107.27140 * 337.80056 * 14 13 11 16 16 C 1.36933 * 125.64881 * 178.98349 * 15 14 13 17 17 H 1.07999 * 120.00271 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00038 * 359.97438 * 16 15 14 19 19 N 1.31615 * 119.99686 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99846 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47134 * 60.00194 * 20 18 16 22 22 H 1.48505 * 109.46629 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47192 * 299.99668 * 20 18 16 24 24 C 1.47424 * 108.70183 * 358.94865 * 15 14 13 25 25 H 1.08998 * 109.46877 * 59.99854 * 1 2 3 26 26 H 1.09001 * 109.46544 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46976 * 299.99976 * 1 2 3 28 28 H 1.08991 * 109.47189 * 240.00113 * 2 1 3 29 29 H 1.08998 * 109.46877 * 120.00146 * 2 1 3 30 30 H 1.09007 * 109.47152 * 354.80242 * 4 3 2 31 31 H 1.09005 * 109.47339 * 234.80507 * 4 3 2 32 32 H 1.08997 * 109.47595 * 114.80093 * 4 3 2 33 33 H 1.08001 * 120.00096 * 5.65352 * 5 3 2 34 34 H 1.09007 * 109.46591 * 204.32066 * 9 8 6 35 35 H 1.08994 * 109.47499 * 324.31621 * 9 8 6 36 36 H 1.08997 * 109.47123 * 62.28762 * 10 9 8 37 37 H 1.08998 * 109.46863 * 182.28378 * 10 9 8 38 38 H 1.08996 * 109.46874 * 302.28146 * 10 9 8 39 39 H 1.09003 * 110.71809 * 35.78858 * 13 11 8 40 40 H 1.08993 * 110.72267 * 159.06552 * 13 11 8 41 41 H 1.08997 * 109.88255 * 97.22536 * 14 13 11 42 42 H 1.08996 * 109.87968 * 218.38830 * 14 13 11 43 43 H 0.97004 * 119.99458 * 179.97438 * 19 18 16 44 44 H 1.09005 * 110.36622 * 265.28216 * 24 15 14 45 45 H 1.09004 * 110.36498 * 142.96310 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1762 2.1692 -1.3000 5 6 2.3487 2.0143 1.1475 6 6 2.7194 3.4377 1.1616 7 8 2.6385 4.0972 0.1430 8 7 3.1486 4.0110 2.3033 9 6 3.1393 3.2486 3.5542 10 6 4.4158 2.4107 3.6503 11 6 3.6245 5.3966 2.2933 12 1 3.5637 5.8212 1.2913 13 6 5.0691 5.4925 2.8512 14 6 4.8488 5.5181 4.3784 15 7 3.4720 5.9773 4.6132 16 6 2.8760 6.1192 5.8378 17 1 1.8552 6.4655 5.9047 18 6 3.5837 5.8178 6.9934 19 7 4.8275 5.3953 6.9118 20 14 2.7708 6.0121 8.6640 21 1 1.5744 5.1354 8.7372 22 1 3.7317 5.6291 9.7295 23 1 2.3604 7.4266 8.8533 24 6 2.8398 6.2605 3.3119 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.9609 1.4979 -2.1315 31 1 3.1950 2.5458 -1.3917 32 1 1.4769 3.0051 -1.3175 33 1 2.3332 1.4512 2.0689 34 1 3.0918 3.9365 4.3985 35 1 2.2705 2.5907 3.5724 36 1 5.2829 3.0707 3.6732 37 1 4.3902 1.8128 4.5613 38 1 4.4836 1.7515 2.7849 39 1 5.6535 4.6195 2.5605 40 1 5.5519 6.4103 2.5157 41 1 4.9809 4.5170 4.7889 42 1 5.5537 6.2075 4.8431 43 1 5.3222 5.1851 7.7193 44 1 2.9356 7.3180 3.0657 45 1 1.7899 5.9676 3.3285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698581279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:43 Heat of formation + Delta-G solvation = 6.694374 kcal Electronic energy + Delta-G solvation = -23417.359874 eV Core-core repulsion = 20243.127527 eV Total energy + Delta-G solvation = -3174.232347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.96865 -37.82681 -35.95052 -34.52691 -32.37690 -30.92103 -30.16358 -29.28033 -27.84489 -26.70298 -24.58589 -24.08478 -22.71904 -21.22850 -20.06356 -18.87107 -17.77084 -17.12733 -16.91743 -15.57074 -14.93750 -14.70827 -14.59166 -14.30275 -13.93418 -13.76617 -13.41388 -13.21727 -12.80352 -12.57649 -12.29966 -12.19907 -12.05980 -11.89785 -11.78468 -11.55234 -11.42404 -11.11265 -11.00308 -10.96324 -10.87251 -10.69474 -10.43248 -10.17202 -10.03699 -9.88689 -9.65322 -9.14212 -8.97404 -8.65675 -8.05421 -6.81985 -5.75521 -3.09463 1.54207 3.37808 3.43280 3.43588 3.52590 3.62364 4.46643 4.63174 4.77930 5.12535 5.16209 5.20241 5.41273 5.44963 5.45547 5.55157 5.59830 5.63299 5.74667 5.75644 5.80445 5.87711 5.92479 5.92972 6.00892 6.03214 6.18214 6.25899 6.28038 6.39399 6.51750 6.57103 6.60759 6.63420 6.66718 6.77690 6.88862 7.27044 7.54032 7.60421 7.80290 8.01261 8.21211 8.65300 9.17961 9.77330 10.43285 11.35197 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.004676 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.020489 B = 5987.189484 C = 6457.107757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.046 4.046 4 C -0.111 4.111 5 C -0.219 4.219 6 C 0.542 3.458 7 O -0.558 6.558 8 N -0.581 5.581 9 C 0.083 3.917 10 C -0.166 4.166 11 C 0.124 3.876 12 H 0.098 0.902 13 C -0.158 4.158 14 C 0.168 3.832 15 N -0.602 5.602 16 C -0.232 4.232 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.124 3.876 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.253 0.747 44 H 0.029 0.971 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 -9.818 -11.653 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.048 4.048 4 C -0.167 4.167 5 C -0.240 4.240 6 C 0.333 3.667 7 O -0.440 6.440 8 N -0.311 5.311 9 C -0.039 4.039 10 C -0.224 4.224 11 C 0.020 3.980 12 H 0.116 0.884 13 C -0.197 4.197 14 C 0.044 3.956 15 N -0.329 5.329 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.002 4.002 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.595 -9.484 -11.904 15.639 hybrid contribution -0.264 0.066 1.194 1.225 sum -3.859 -9.418 -10.710 14.775 Atomic orbital electron populations 1.21707 0.94282 1.01783 1.02530 1.20721 0.96507 0.92899 1.02963 1.22476 0.91548 0.95268 0.95480 1.20956 1.03780 0.99293 0.92661 1.22595 1.07660 0.94845 0.98896 1.18553 0.77360 0.87751 0.83019 1.90702 1.55266 1.65219 1.32806 1.47712 1.62064 1.13023 1.08298 1.22093 0.96590 0.96554 0.88686 1.22304 0.99529 0.99923 1.00682 1.22189 0.94577 0.81452 0.99785 0.88415 1.23296 0.95370 1.00871 1.00164 1.21374 0.86251 1.00220 0.87740 1.44596 1.10454 1.77588 1.00275 1.18999 0.96399 1.38735 0.81889 0.90536 1.24767 0.96223 1.01442 0.97628 1.69953 1.09003 1.50613 1.27075 0.86236 0.78116 0.77877 0.83738 1.21172 1.21623 1.21243 1.21913 0.96009 0.95780 0.86547 0.92412 0.92269 0.92283 0.90836 0.90901 0.93451 0.90600 0.89758 0.85616 0.84594 0.92353 0.91324 0.92055 0.93889 0.91755 0.91594 0.92175 0.94173 0.93677 0.95309 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.09 -0.86 6.04 -27.88 -0.17 -1.03 16 3 C -0.05 -0.56 5.36 -101.17 -0.54 -1.10 16 4 C -0.11 -1.39 8.34 36.00 0.30 -1.09 16 5 C -0.22 -3.11 8.12 -37.81 -0.31 -3.42 16 6 C 0.54 9.44 7.50 -12.67 -0.10 9.34 16 7 O -0.56 -10.73 12.59 5.26 0.07 -10.67 16 8 N -0.58 -10.44 2.53 -165.06 -0.42 -10.86 16 9 C 0.08 1.48 4.75 -4.04 -0.02 1.46 16 10 C -0.17 -2.68 9.18 37.16 0.34 -2.34 16 11 C 0.12 2.35 3.67 -65.78 -0.24 2.11 16 12 H 0.10 1.84 7.02 -51.93 -0.36 1.47 16 13 C -0.16 -2.99 5.99 -24.90 -0.15 -3.14 16 14 C 0.17 3.87 4.15 -3.06 -0.01 3.86 16 15 N -0.60 -14.57 1.91 -170.07 -0.33 -14.89 16 16 C -0.23 -6.16 9.91 -15.06 -0.15 -6.31 16 17 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 18 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 19 N -0.92 -25.55 10.31 55.49 0.57 -24.98 16 20 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.12 2.61 6.54 -2.53 -0.02 2.59 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.59 8.11 -51.93 -0.42 0.16 16 29 H 0.07 0.63 7.99 -51.93 -0.41 0.22 16 30 H 0.05 0.47 7.98 -51.93 -0.41 0.06 16 31 H 0.08 1.06 7.41 -51.93 -0.38 0.68 16 32 H 0.08 1.20 7.09 -51.93 -0.37 0.83 16 33 H 0.13 1.64 6.03 -52.49 -0.32 1.32 16 34 H 0.14 2.96 4.29 -51.92 -0.22 2.73 16 35 H 0.06 0.94 6.60 -51.93 -0.34 0.59 16 36 H 0.07 1.21 4.77 -51.93 -0.25 0.96 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.62 7.22 -51.93 -0.38 0.24 16 39 H 0.06 1.16 6.78 -51.93 -0.35 0.80 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.46 4.46 -51.93 -0.23 1.22 16 42 H 0.04 1.05 7.51 -51.93 -0.39 0.66 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -28.70 339.54 -8.15 -36.85 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.35 Total: 3.22 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -0.79 Total: -0.14 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.17 Total: -50.73 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.70 -8.15 -36.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698581279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.544 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds