Wall clock time and date at job start Fri Apr 10 2020 17:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47405 * 2 1 4 4 C 1.50699 * 119.99743 * 275.00275 * 3 2 1 5 5 C 1.32986 * 119.99860 * 95.00306 * 3 2 1 6 6 C 1.47106 * 119.99777 * 172.12368 * 5 3 2 7 7 O 1.21615 * 120.00090 * 2.32460 * 6 5 3 8 8 N 1.34773 * 119.99752 * 182.32869 * 6 5 3 9 9 C 1.46500 * 120.00531 * 355.11263 * 8 6 5 10 10 C 1.53005 * 109.46866 * 276.32703 * 9 8 6 11 11 C 1.46508 * 119.99914 * 175.11032 * 8 6 5 12 12 H 1.08999 * 110.88596 * 0.86714 * 11 8 6 13 13 C 1.55156 * 111.00297 * 124.74984 * 11 8 6 14 14 C 1.54316 * 102.94414 * 82.57181 * 13 11 8 15 15 N 1.47023 * 107.27375 * 22.19597 * 14 13 11 16 16 C 1.36930 * 125.64998 * 180.79641 * 15 14 13 17 17 H 1.08004 * 120.00338 * 174.74172 * 16 15 14 18 18 C 1.38819 * 120.00244 * 354.73954 * 16 15 14 19 19 N 1.31617 * 119.99423 * 5.49841 * 18 16 15 20 20 Si 1.86794 * 120.00041 * 185.49254 * 18 16 15 21 21 H 1.48499 * 109.47302 * 95.00003 * 20 18 16 22 22 H 1.48502 * 109.47036 * 214.99703 * 20 18 16 23 23 H 1.48500 * 109.47427 * 334.99700 * 20 18 16 24 24 C 1.47424 * 108.70197 * 1.05319 * 15 14 13 25 25 H 1.09005 * 109.47362 * 59.99552 * 1 2 3 26 26 H 1.08996 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47087 * 300.00059 * 1 2 3 28 28 H 1.09005 * 109.47087 * 239.99940 * 2 1 3 29 29 H 1.09005 * 109.47362 * 120.00448 * 2 1 3 30 30 H 1.09006 * 109.47126 * 264.05380 * 4 3 2 31 31 H 1.08993 * 109.47511 * 24.05285 * 4 3 2 32 32 H 1.08998 * 109.47165 * 144.05531 * 4 3 2 33 33 H 1.07996 * 120.00638 * 352.11846 * 5 3 2 34 34 H 1.09000 * 109.47101 * 36.31979 * 9 8 6 35 35 H 1.08998 * 109.47837 * 156.32362 * 9 8 6 36 36 H 1.09003 * 109.46511 * 304.97503 * 10 9 8 37 37 H 1.08995 * 109.47409 * 64.97945 * 10 9 8 38 38 H 1.09003 * 109.46624 * 184.98449 * 10 9 8 39 39 H 1.09007 * 110.72060 * 324.20667 * 13 11 8 40 40 H 1.09001 * 110.71459 * 200.93955 * 13 11 8 41 41 H 1.09001 * 109.88434 * 262.77479 * 14 13 11 42 42 H 1.09008 * 109.88381 * 141.60871 * 14 13 11 43 43 H 0.97001 * 119.99711 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.36385 * 94.71109 * 24 15 14 45 45 H 1.09001 * 110.37068 * 217.03820 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1762 2.1691 -1.3001 5 6 2.3487 2.0142 1.1473 6 6 3.0001 3.3331 1.1381 7 8 3.2111 3.8997 0.0829 8 7 3.3632 3.9135 2.2990 9 6 3.0142 3.2824 3.5742 10 6 1.5864 3.6722 3.9621 11 6 4.1071 5.1756 2.2858 12 1 4.2729 5.5183 1.2644 13 6 3.3792 6.2589 3.1247 14 6 3.8305 5.9411 4.5658 15 7 5.0866 5.1829 4.4728 16 6 5.8056 4.6966 5.5319 17 1 6.6732 4.0777 5.3569 18 6 5.4193 4.9990 6.8305 19 7 4.3028 5.6614 7.0475 20 14 6.4839 4.4659 8.2697 21 1 7.3871 5.5793 8.6566 22 1 5.6169 4.1090 9.4213 23 1 7.2942 3.2854 7.8757 24 6 5.4472 5.0382 3.0507 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2061 2.0954 -1.6497 31 1 1.5081 1.7361 -2.0445 32 1 1.9188 3.2170 -1.1466 33 1 2.1274 1.5279 2.0859 34 1 3.0803 2.1990 3.4735 35 1 3.7053 3.6183 4.3472 36 1 1.4976 4.7585 3.9764 37 1 0.8869 3.2599 3.2350 38 1 1.3577 3.2759 4.9515 39 1 2.2980 6.1594 3.0283 40 1 3.7035 7.2570 2.8302 41 1 3.0716 5.3412 5.0681 42 1 3.9968 6.8679 5.1151 43 1 4.0327 5.8724 7.9549 44 1 6.1371 5.8276 2.7521 45 1 5.8890 4.0584 2.8691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698581282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:49 Heat of formation + Delta-G solvation = 9.289952 kcal Electronic energy + Delta-G solvation = -23382.507064 eV Core-core repulsion = 20208.387270 eV Total energy + Delta-G solvation = -3174.119794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.98777 -37.84566 -35.94991 -34.54590 -32.37224 -30.91582 -30.19239 -29.28845 -27.84494 -26.70088 -24.59512 -24.08740 -22.74216 -21.23360 -20.06601 -18.89977 -17.75265 -17.16788 -16.93139 -15.57413 -14.86503 -14.83357 -14.62025 -14.24176 -13.85321 -13.76338 -13.66371 -13.02792 -12.84948 -12.54601 -12.46910 -12.15420 -12.06207 -11.93120 -11.79559 -11.52827 -11.46542 -11.13851 -11.00026 -10.99045 -10.87663 -10.71715 -10.46554 -10.13624 -9.98363 -9.89053 -9.64741 -9.10052 -8.93261 -8.66101 -8.06486 -6.82304 -5.77160 -3.10277 1.53272 3.37189 3.43562 3.44618 3.50997 3.61099 4.46336 4.63633 4.78546 5.12873 5.14837 5.18904 5.40336 5.43848 5.44644 5.53741 5.60741 5.64280 5.73778 5.73878 5.78686 5.84801 5.89818 5.92862 5.99360 6.02954 6.19242 6.25508 6.26520 6.38744 6.51343 6.56104 6.61513 6.64455 6.69054 6.77677 6.86857 7.26064 7.53301 7.60750 7.79529 8.00462 8.20493 8.64630 9.17159 9.76800 10.43066 11.34039 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.004564 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.698796 B = 6133.641060 C = 6544.471759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.043 4.043 4 C -0.123 4.123 5 C -0.221 4.221 6 C 0.542 3.458 7 O -0.558 6.558 8 N -0.580 5.580 9 C 0.082 3.918 10 C -0.165 4.165 11 C 0.124 3.876 12 H 0.098 0.902 13 C -0.157 4.157 14 C 0.169 3.831 15 N -0.602 5.602 16 C -0.232 4.232 17 H 0.078 0.922 18 C -0.003 4.003 19 N -0.917 5.917 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.124 3.876 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.136 0.864 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.030 0.970 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.289 -8.148 -11.359 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.045 4.045 4 C -0.179 4.179 5 C -0.241 4.241 6 C 0.334 3.666 7 O -0.440 6.440 8 N -0.310 5.310 9 C -0.041 4.041 10 C -0.223 4.223 11 C 0.020 3.980 12 H 0.116 0.884 13 C -0.196 4.196 14 C 0.045 3.955 15 N -0.329 5.329 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.200 4.200 19 N -0.564 5.564 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.003 4.003 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.154 0.846 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.178 -7.834 -11.622 15.747 hybrid contribution 0.523 -0.259 1.086 1.233 sum -6.656 -8.092 -10.536 14.859 Atomic orbital electron populations 1.21719 0.94469 1.01780 1.02421 1.20738 0.96514 0.92935 1.03071 1.22484 0.91747 0.94704 0.95541 1.21163 1.01807 1.01849 0.93119 1.22560 1.06022 0.96823 0.98742 1.18556 0.78946 0.85648 0.83458 1.90666 1.56983 1.65857 1.30483 1.47716 1.54195 1.23162 1.05954 1.22111 0.98242 0.96534 0.87176 1.22271 0.96471 1.02824 1.00744 1.22206 0.92539 0.83486 0.99808 0.88375 1.23289 0.99657 0.97527 0.99170 1.21345 0.88149 0.96451 0.89572 1.44595 1.24548 1.64132 0.99640 1.19050 1.07507 1.25343 0.84145 0.90457 1.24793 0.97681 1.00316 0.97214 1.69973 1.22188 1.44689 1.19596 0.86155 0.79583 0.77976 0.82384 1.21679 1.21777 1.20660 1.21925 0.93487 0.98715 0.86146 0.92461 0.92343 0.92334 0.90624 0.90815 0.90848 0.93265 0.88628 0.85618 0.92171 0.84646 0.91574 0.94009 0.91840 0.91712 0.91574 0.92723 0.93805 0.93722 0.95250 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.84 16 2 C -0.10 -0.88 6.08 -27.89 -0.17 -1.05 16 3 C -0.04 -0.53 5.36 -101.17 -0.54 -1.07 16 4 C -0.12 -1.55 8.53 36.00 0.31 -1.24 16 5 C -0.22 -3.13 8.52 -37.81 -0.32 -3.45 16 6 C 0.54 9.40 7.50 -12.66 -0.09 9.30 16 7 O -0.56 -10.65 12.52 5.26 0.07 -10.59 16 8 N -0.58 -10.36 2.53 -165.04 -0.42 -10.78 16 9 C 0.08 1.44 4.79 -4.04 -0.02 1.42 16 10 C -0.17 -2.64 9.24 37.16 0.34 -2.30 16 11 C 0.12 2.34 3.67 -65.78 -0.24 2.09 16 12 H 0.10 1.84 7.02 -51.93 -0.36 1.47 16 13 C -0.16 -2.99 6.00 -24.90 -0.15 -3.14 16 14 C 0.17 3.89 4.17 -3.07 -0.01 3.88 16 15 N -0.60 -14.53 1.93 -170.07 -0.33 -14.86 16 16 C -0.23 -6.16 9.95 -15.06 -0.15 -6.31 16 17 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 18 C 0.00 -0.09 5.48 -17.43 -0.10 -0.18 16 19 N -0.92 -25.58 10.35 55.49 0.57 -25.00 16 20 Si 0.91 21.40 29.56 -169.99 -5.02 16.37 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.12 2.59 6.58 -2.53 -0.02 2.57 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 30 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 31 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.10 1.43 5.95 -51.93 -0.31 1.12 16 33 H 0.13 1.63 6.28 -52.49 -0.33 1.30 16 34 H 0.06 0.95 6.29 -51.93 -0.33 0.62 16 35 H 0.14 2.91 4.23 -51.93 -0.22 2.70 16 36 H 0.07 1.14 5.00 -51.93 -0.26 0.88 16 37 H 0.04 0.59 7.86 -51.93 -0.41 0.18 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.17 6.52 -51.93 -0.34 0.83 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 1.32 4.85 -51.93 -0.25 1.07 16 42 H 0.04 1.15 7.36 -51.92 -0.38 0.76 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -28.73 340.83 -8.16 -36.89 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.38 Total: 3.14 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.80 Total: -0.31 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.17 Total: -50.64 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.73 -8.16 -36.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698581282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.180 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds