Wall clock time and date at job start Fri Apr 10 2020 17:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47405 * 2 1 4 4 C 1.50699 * 119.99743 * 275.00275 * 3 2 1 5 5 C 1.32986 * 119.99860 * 95.00306 * 3 2 1 6 6 C 1.47106 * 119.99777 * 172.12368 * 5 3 2 7 7 O 1.21615 * 120.00090 * 2.32460 * 6 5 3 8 8 N 1.34773 * 119.99752 * 182.32869 * 6 5 3 9 9 C 1.46500 * 120.00531 * 355.11263 * 8 6 5 10 10 C 1.53005 * 109.46866 * 276.32703 * 9 8 6 11 11 C 1.46508 * 119.99914 * 175.11032 * 8 6 5 12 12 H 1.08999 * 110.88596 * 0.86714 * 11 8 6 13 13 C 1.55156 * 111.00297 * 124.74984 * 11 8 6 14 14 C 1.54316 * 102.94414 * 82.57181 * 13 11 8 15 15 N 1.47023 * 107.27375 * 22.19597 * 14 13 11 16 16 C 1.36930 * 125.64998 * 180.79641 * 15 14 13 17 17 H 1.08004 * 120.00338 * 174.74172 * 16 15 14 18 18 C 1.38819 * 120.00244 * 354.73954 * 16 15 14 19 19 N 1.31617 * 119.99423 * 5.49841 * 18 16 15 20 20 Si 1.86794 * 120.00041 * 185.49254 * 18 16 15 21 21 H 1.48499 * 109.47302 * 95.00003 * 20 18 16 22 22 H 1.48502 * 109.47036 * 214.99703 * 20 18 16 23 23 H 1.48500 * 109.47427 * 334.99700 * 20 18 16 24 24 C 1.47424 * 108.70197 * 1.05319 * 15 14 13 25 25 H 1.09005 * 109.47362 * 59.99552 * 1 2 3 26 26 H 1.08996 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47087 * 300.00059 * 1 2 3 28 28 H 1.09005 * 109.47087 * 239.99940 * 2 1 3 29 29 H 1.09005 * 109.47362 * 120.00448 * 2 1 3 30 30 H 1.09006 * 109.47126 * 264.05380 * 4 3 2 31 31 H 1.08993 * 109.47511 * 24.05285 * 4 3 2 32 32 H 1.08998 * 109.47165 * 144.05531 * 4 3 2 33 33 H 1.07996 * 120.00638 * 352.11846 * 5 3 2 34 34 H 1.09000 * 109.47101 * 36.31979 * 9 8 6 35 35 H 1.08998 * 109.47837 * 156.32362 * 9 8 6 36 36 H 1.09003 * 109.46511 * 304.97503 * 10 9 8 37 37 H 1.08995 * 109.47409 * 64.97945 * 10 9 8 38 38 H 1.09003 * 109.46624 * 184.98449 * 10 9 8 39 39 H 1.09007 * 110.72060 * 324.20667 * 13 11 8 40 40 H 1.09001 * 110.71459 * 200.93955 * 13 11 8 41 41 H 1.09001 * 109.88434 * 262.77479 * 14 13 11 42 42 H 1.09008 * 109.88381 * 141.60871 * 14 13 11 43 43 H 0.97001 * 119.99711 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.36385 * 94.71109 * 24 15 14 45 45 H 1.09001 * 110.37068 * 217.03820 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1762 2.1691 -1.3001 5 6 2.3487 2.0142 1.1473 6 6 3.0001 3.3331 1.1381 7 8 3.2111 3.8997 0.0829 8 7 3.3632 3.9135 2.2990 9 6 3.0142 3.2824 3.5742 10 6 1.5864 3.6722 3.9621 11 6 4.1071 5.1756 2.2858 12 1 4.2729 5.5183 1.2644 13 6 3.3792 6.2589 3.1247 14 6 3.8305 5.9411 4.5658 15 7 5.0866 5.1829 4.4728 16 6 5.8056 4.6966 5.5319 17 1 6.6732 4.0777 5.3569 18 6 5.4193 4.9990 6.8305 19 7 4.3028 5.6614 7.0475 20 14 6.4839 4.4659 8.2697 21 1 7.3871 5.5793 8.6566 22 1 5.6169 4.1090 9.4213 23 1 7.2942 3.2854 7.8757 24 6 5.4472 5.0382 3.0507 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2061 2.0954 -1.6497 31 1 1.5081 1.7361 -2.0445 32 1 1.9188 3.2170 -1.1466 33 1 2.1274 1.5279 2.0859 34 1 3.0803 2.1990 3.4735 35 1 3.7053 3.6183 4.3472 36 1 1.4976 4.7585 3.9764 37 1 0.8869 3.2599 3.2350 38 1 1.3577 3.2759 4.9515 39 1 2.2980 6.1594 3.0283 40 1 3.7035 7.2570 2.8302 41 1 3.0716 5.3412 5.0681 42 1 3.9968 6.8679 5.1151 43 1 4.0327 5.8724 7.9549 44 1 6.1371 5.8276 2.7521 45 1 5.8890 4.0584 2.8691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698581282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:49 Heat of formation + Delta-G solvation = -4.763771 kcal Electronic energy + Delta-G solvation = -23383.116479 eV Core-core repulsion = 20208.387270 eV Total energy + Delta-G solvation = -3174.729209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39497 -39.34642 -36.99844 -36.10977 -34.20288 -31.95931 -31.53733 -31.04256 -29.14541 -28.17490 -26.41911 -25.04876 -24.07778 -22.56474 -21.91891 -20.26256 -18.98672 -18.79631 -18.51764 -16.99630 -16.65589 -16.14268 -15.81903 -15.69254 -15.29898 -15.07000 -14.82700 -14.30243 -14.15620 -13.83115 -13.78905 -13.64976 -13.43075 -13.30410 -13.00646 -12.92002 -12.85229 -12.67606 -12.41543 -12.30550 -12.16788 -12.08686 -11.98458 -11.77958 -11.71940 -11.49405 -11.46697 -10.67155 -10.38057 -10.06218 -9.52062 -8.76608 -7.82166 -5.16236 0.44469 1.48754 1.50574 1.58486 2.14287 2.33936 2.51673 3.37351 3.59918 3.68960 3.89857 3.94809 4.02356 4.13395 4.28465 4.33241 4.37772 4.46029 4.51024 4.62794 4.66413 4.69593 4.76091 4.79468 4.87234 4.89685 4.95267 4.99813 5.03916 5.05021 5.11821 5.19602 5.30435 5.39197 5.40295 5.51445 5.63641 5.65272 5.70834 5.81660 5.85023 6.22441 6.63876 7.13789 7.29812 7.78698 8.44292 9.27637 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.004564 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.698796 B = 6133.641060 C = 6544.471759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.021 4.021 4 C -0.124 4.124 5 C -0.245 4.245 6 C 0.538 3.462 7 O -0.581 6.581 8 N -0.585 5.585 9 C 0.088 3.912 10 C -0.155 4.155 11 C 0.134 3.866 12 H 0.104 0.896 13 C -0.143 4.143 14 C 0.182 3.818 15 N -0.614 5.614 16 C -0.241 4.241 17 H 0.078 0.922 18 C -0.052 4.052 19 N -0.942 5.942 20 Si 0.970 3.030 21 H -0.293 1.293 22 H -0.294 1.294 23 H -0.270 1.270 24 C 0.125 3.875 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.005 0.995 43 H 0.247 0.753 44 H 0.034 0.966 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 -10.064 -12.601 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.023 4.023 4 C -0.180 4.180 5 C -0.266 4.266 6 C 0.332 3.668 7 O -0.465 6.465 8 N -0.315 5.315 9 C -0.034 4.034 10 C -0.213 4.213 11 C 0.029 3.971 12 H 0.122 0.878 13 C -0.182 4.182 14 C 0.058 3.942 15 N -0.341 5.341 16 C -0.369 4.369 17 H 0.095 0.905 18 C -0.246 4.246 19 N -0.590 5.590 20 Si 0.799 3.201 21 H -0.221 1.221 22 H -0.221 1.221 23 H -0.195 1.195 24 C -0.001 4.001 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.023 0.977 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.855 -9.766 -12.888 17.977 hybrid contribution 0.738 0.296 1.358 1.573 sum -7.117 -9.470 -11.530 16.531 Atomic orbital electron populations 1.21715 0.93391 1.02931 1.02190 1.20830 0.97263 0.90685 1.04340 1.22850 0.88944 0.95878 0.94632 1.21128 1.02007 1.00722 0.94135 1.22486 1.08240 0.95732 1.00116 1.19078 0.78573 0.86477 0.82672 1.90662 1.58062 1.66695 1.31034 1.47744 1.54416 1.22877 1.06429 1.21950 0.98045 0.97477 0.85952 1.22158 0.95993 1.01785 1.01405 1.22021 0.91460 0.84142 0.99447 0.87825 1.23155 1.00322 0.98315 0.96434 1.21075 0.87551 0.94121 0.91464 1.44734 1.24804 1.63997 1.00535 1.19320 1.07458 1.25060 0.85090 0.90454 1.25477 0.98799 1.00960 0.99369 1.70157 1.23466 1.45908 1.19460 0.85194 0.77936 0.77658 0.79323 1.22062 1.22064 1.19513 1.21996 0.94791 0.98543 0.84795 0.92300 0.90552 0.93018 0.88923 0.90052 0.91481 0.90512 0.91047 0.84379 0.90281 0.88456 0.93178 0.91895 0.91725 0.90562 0.90343 0.94239 0.97661 0.94376 0.94818 0.94246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.09 -1.40 6.08 29.85 0.18 -1.22 16 3 C -0.02 -0.46 5.36 -17.62 -0.09 -0.56 16 4 C -0.12 -2.86 8.53 71.24 0.61 -2.26 16 5 C -0.25 -6.46 8.52 23.43 0.20 -6.27 16 6 C 0.54 18.08 7.50 86.57 0.65 18.73 16 7 O -0.58 -21.78 12.52 -4.08 -0.05 -21.83 16 8 N -0.58 -20.50 2.53 -794.33 -2.01 -22.51 16 9 C 0.09 3.06 4.79 86.38 0.41 3.48 16 10 C -0.16 -4.85 9.24 71.98 0.67 -4.18 16 11 C 0.13 5.01 3.67 46.38 0.17 5.18 16 12 H 0.10 3.80 7.02 -2.39 -0.02 3.78 16 13 C -0.14 -5.43 6.00 31.78 0.19 -5.23 16 14 C 0.18 8.61 4.17 86.73 0.36 8.97 16 15 N -0.61 -30.17 1.93 -691.97 -1.33 -31.50 16 16 C -0.24 -12.92 9.95 84.04 0.84 -12.09 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.05 -2.83 5.48 84.86 0.47 -2.37 16 19 N -0.94 -53.85 10.35 21.65 0.22 -53.63 16 20 Si 0.97 44.43 29.56 68.60 2.03 46.46 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 C 0.12 5.22 6.58 86.86 0.57 5.80 16 25 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.08 1.14 8.04 -2.38 -0.02 1.12 16 30 H 0.07 1.66 8.10 -2.38 -0.02 1.64 16 31 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 32 H 0.07 2.06 5.95 -2.39 -0.01 2.04 16 33 H 0.14 3.24 6.28 -2.91 -0.02 3.22 16 34 H 0.08 2.40 6.29 -2.39 -0.02 2.38 16 35 H 0.10 4.24 4.23 -2.39 -0.01 4.23 16 36 H 0.05 1.71 5.00 -2.39 -0.01 1.70 16 37 H 0.06 1.68 7.86 -2.39 -0.02 1.66 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 2.72 6.52 -2.38 -0.02 2.70 16 40 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.04 1.98 4.85 -2.39 -0.01 1.97 16 42 H 0.01 0.28 7.36 -2.38 -0.02 0.26 16 43 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 44 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -62.51 340.83 5.75 -56.76 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.96 Total: 19.45 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.93 Total: 6.81 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -3.12 Total: -107.64 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -62.51 5.75 -56.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698581282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.997 kcal (2) G-P(sol) polarization free energy of solvation -62.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds