Wall clock time and date at job start Fri Apr 10 2020 17:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 119.99822 * 2 1 4 4 C 1.50696 * 120.00130 * 359.97438 * 3 2 1 5 5 C 1.47107 * 119.99702 * 179.97438 * 3 2 1 6 6 O 1.21615 * 119.99370 * 261.55348 * 5 3 2 7 7 N 1.34773 * 120.00096 * 81.55096 * 5 3 2 8 8 C 1.46930 * 120.63173 * 354.87038 * 7 5 3 9 9 C 1.53188 * 108.77241 * 126.43409 * 8 7 5 10 10 C 1.53038 * 109.31403 * 54.63960 * 9 8 7 11 11 C 1.53041 * 109.53554 * 298.63134 * 10 9 8 12 12 H 1.09000 * 109.50121 * 301.38136 * 11 10 9 13 13 C 1.53007 * 109.49577 * 181.31446 * 11 10 9 14 14 C 1.53004 * 109.46943 * 175.06437 * 13 11 10 15 15 N 1.46494 * 109.47234 * 179.97438 * 14 13 11 16 16 C 1.36938 * 120.00188 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99810 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00095 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99781 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00121 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47012 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47317 * 119.99823 * 20 18 16 23 23 H 1.48496 * 109.47152 * 239.99995 * 20 18 16 24 24 C 1.46928 * 120.60303 * 174.89575 * 7 5 3 25 25 H 1.09000 * 109.47278 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47517 * 300.00878 * 1 2 3 27 27 H 1.09000 * 109.46976 * 60.00304 * 1 2 3 28 28 H 1.07995 * 119.99567 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46893 * 275.53154 * 4 3 2 30 30 H 1.09000 * 109.47227 * 35.53605 * 4 3 2 31 31 H 1.09001 * 109.46895 * 155.54066 * 4 3 2 32 32 H 1.09000 * 109.58346 * 6.65007 * 8 7 5 33 33 H 1.08999 * 109.58782 * 246.22094 * 8 7 5 34 34 H 1.09001 * 109.49953 * 294.68491 * 9 8 7 35 35 H 1.09005 * 109.49608 * 174.58499 * 9 8 7 36 36 H 1.09000 * 109.46647 * 178.61369 * 10 9 8 37 37 H 1.08997 * 109.46289 * 58.64936 * 10 9 8 38 38 H 1.09000 * 109.47030 * 55.07049 * 13 11 10 39 39 H 1.08995 * 109.46953 * 295.06389 * 13 11 10 40 40 H 1.09000 * 109.47183 * 300.00258 * 14 13 11 41 41 H 1.09005 * 109.46673 * 59.99972 * 14 13 11 42 42 H 0.97005 * 119.99971 * 0.02562 * 15 14 13 43 43 H 0.97004 * 120.00241 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.56326 * 113.76731 * 24 7 5 45 45 H 1.08993 * 109.61749 * 353.33952 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1518 0.0006 6 8 4.2506 1.3067 1.0426 7 7 4.3174 0.9800 -1.1536 8 6 3.6017 0.6802 -2.4013 9 6 4.0206 1.6980 -3.4668 10 6 5.5452 1.6928 -3.5999 11 6 6.1767 2.1012 -2.2671 12 1 5.8208 3.0919 -1.9842 13 6 7.6998 2.1275 -2.4105 14 6 8.3248 2.6537 -1.1168 15 7 9.7832 2.6783 -1.2538 16 6 10.5612 3.1158 -0.2153 17 1 10.0996 3.4423 0.7049 18 6 11.9430 3.1396 -0.3454 19 7 12.5053 2.7422 -1.4670 20 14 13.0043 3.7357 1.0715 21 1 12.1355 4.1244 2.2113 22 1 13.9206 2.6469 1.4958 23 1 13.8005 4.9102 0.6336 24 6 5.7822 1.0886 -1.1874 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 2.0469 -0.9353 0.0004 29 1 1.1514 2.7217 -1.0237 30 1 0.5123 2.3535 0.5964 31 1 2.0468 3.2393 0.4250 32 1 2.5272 0.7498 -2.2319 33 1 3.8565 -0.3253 -2.7362 34 1 3.6845 2.6922 -3.1723 35 1 3.5711 1.4297 -4.4229 36 1 5.8445 2.3985 -4.3749 37 1 5.8828 0.6923 -3.8702 38 1 7.9755 2.7802 -3.2388 39 1 8.0638 1.1189 -2.6059 40 1 7.9608 3.6623 -0.9214 41 1 8.0490 2.0010 -0.2885 42 1 10.1977 2.3854 -2.0805 43 1 13.4710 2.7584 -1.5578 44 1 6.2150 0.1163 -1.4228 45 1 6.1464 1.4278 -0.2177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698669751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:53 Heat of formation + Delta-G solvation = -29.809864 kcal Electronic energy + Delta-G solvation = -22200.559143 eV Core-core repulsion = 19024.743853 eV Total energy + Delta-G solvation = -3175.815289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42349 -37.94205 -35.92430 -35.23313 -33.37036 -32.14762 -30.65006 -29.68351 -27.63297 -26.74932 -25.14283 -24.13772 -22.57970 -21.49105 -20.65577 -19.75132 -18.36826 -17.08907 -16.88519 -16.31643 -15.39153 -15.13693 -14.73840 -14.47922 -14.16339 -13.89255 -13.79180 -13.49405 -13.43382 -13.09517 -12.99263 -12.88193 -12.63604 -12.58689 -12.28312 -12.15780 -11.66083 -11.39636 -11.12574 -11.08365 -11.00369 -10.82162 -10.56368 -10.42131 -10.19643 -9.90364 -9.85184 -9.60315 -9.19937 -8.80497 -8.68842 -6.84915 -5.70689 -2.98686 1.50700 2.50881 2.97108 3.48163 3.53883 3.56587 4.26026 4.55085 4.63997 4.68075 4.75504 4.80303 4.90647 4.97263 5.03236 5.15839 5.17344 5.25737 5.34987 5.40756 5.47171 5.54338 5.60434 5.62863 5.63543 5.66298 5.72652 5.80627 5.91670 6.01221 6.05255 6.10744 6.24094 6.29110 6.31688 6.37190 6.47115 6.55169 6.93498 6.96772 7.31357 7.77870 8.08690 8.48863 9.59771 10.18486 10.53248 11.52595 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025789 B = 0.003294 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.453870 B = 8498.847606 C = 9256.149836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 C -0.158 4.158 4 C -0.106 4.106 5 C 0.553 3.447 6 O -0.533 6.533 7 N -0.606 5.606 8 C 0.107 3.893 9 C -0.134 4.134 10 C -0.116 4.116 11 C -0.095 4.095 12 H 0.073 0.927 13 C -0.118 4.118 14 C 0.150 3.850 15 N -0.734 5.734 16 C -0.235 4.235 17 H 0.071 0.929 18 C -0.017 4.017 19 N -0.936 5.936 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.113 3.887 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.068 0.932 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.231 -5.406 -5.189 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C -0.161 4.161 4 C -0.163 4.163 5 C 0.341 3.659 6 O -0.409 6.409 7 N -0.339 5.339 8 C -0.016 4.016 9 C -0.172 4.172 10 C -0.153 4.153 11 C -0.115 4.115 12 H 0.092 0.908 13 C -0.157 4.157 14 C 0.023 3.977 15 N -0.378 5.378 16 C -0.367 4.367 17 H 0.089 0.911 18 C -0.212 4.212 19 N -0.585 5.585 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.008 4.008 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.853 -5.258 -4.451 27.723 hybrid contribution 0.915 0.161 0.388 1.007 sum -25.938 -5.097 -4.063 26.745 Atomic orbital electron populations 1.20870 0.92065 1.02700 1.02353 1.23234 0.96529 0.96749 0.97996 1.21433 0.92797 0.97191 1.04703 1.20703 0.99654 0.93614 1.02336 1.18605 0.87711 0.76132 0.83454 1.90847 1.69786 1.49145 1.31167 1.48182 1.07763 1.69949 1.07969 1.21755 0.97059 0.98691 0.84072 1.21923 0.97089 0.99742 0.98478 1.21597 0.94147 1.02102 0.97470 1.21459 0.96275 0.99254 0.94498 0.90828 1.21732 0.92360 1.01883 0.99689 1.20715 0.85686 0.97144 0.94165 1.42382 0.99640 1.78725 1.17073 1.19316 0.88445 1.34749 0.94159 0.91134 1.24739 0.96618 1.02457 0.97422 1.69673 1.09612 1.54053 1.25160 0.86109 0.80549 0.77949 0.81615 1.20506 1.21877 1.21907 1.21849 0.78020 0.99423 1.01544 0.91697 0.91031 0.91090 0.86853 0.90855 0.90825 0.91403 0.89750 0.91359 0.91487 0.90813 0.91398 0.91671 0.91519 0.91768 0.96536 0.96172 0.78370 0.93646 0.91335 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 8.98 36.01 0.32 -0.33 16 2 C -0.13 -1.02 9.32 -36.13 -0.34 -1.36 16 3 C -0.16 -1.60 4.03 -102.84 -0.41 -2.01 16 4 C -0.11 -0.85 9.45 36.00 0.34 -0.51 16 5 C 0.55 7.71 7.04 -12.66 -0.09 7.63 16 6 O -0.53 -9.94 16.54 5.26 0.09 -9.86 16 7 N -0.61 -7.41 2.97 -174.16 -0.52 -7.93 16 8 C 0.11 0.92 6.29 -3.71 -0.02 0.89 16 9 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 10 C -0.12 -1.18 5.17 -26.69 -0.14 -1.32 16 11 C -0.10 -1.26 2.34 -90.50 -0.21 -1.47 16 12 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 13 C -0.12 -1.93 4.80 -26.73 -0.13 -2.06 16 14 C 0.15 3.20 6.02 -4.04 -0.02 3.18 16 15 N -0.73 -19.58 5.60 -59.91 -0.34 -19.91 16 16 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 17 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 18 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 19 N -0.94 -29.19 13.06 55.49 0.72 -28.47 16 20 Si 0.91 23.27 29.55 -169.99 -5.02 18.24 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 C 0.11 1.59 5.31 -3.71 -0.02 1.57 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.37 7.41 -51.93 -0.38 -0.01 16 27 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 28 H 0.11 0.94 8.05 -52.49 -0.42 0.51 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16 31 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.08 0.60 5.91 -51.93 -0.31 0.29 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.45 6.70 -51.93 -0.35 0.10 16 42 H 0.38 10.57 7.67 -40.82 -0.31 10.26 16 43 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 1.70 5.76 -51.93 -0.30 1.40 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -34.60 357.59 -8.69 -43.29 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.88 Total: 3.98 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.13 Total: -4.73 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.13 Total: -56.31 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.60 -8.69 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698669751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.476 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds