Wall clock time and date at job start Fri Apr 10 2020 17:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 119.99822 * 2 1 4 4 C 1.50696 * 120.00130 * 359.97438 * 3 2 1 5 5 C 1.47107 * 119.99702 * 179.97438 * 3 2 1 6 6 O 1.21615 * 119.99370 * 261.55348 * 5 3 2 7 7 N 1.34773 * 120.00096 * 81.55096 * 5 3 2 8 8 C 1.46930 * 120.63173 * 354.87038 * 7 5 3 9 9 C 1.53188 * 108.77241 * 126.43409 * 8 7 5 10 10 C 1.53038 * 109.31403 * 54.63960 * 9 8 7 11 11 C 1.53041 * 109.53554 * 298.63134 * 10 9 8 12 12 H 1.09000 * 109.50121 * 301.38136 * 11 10 9 13 13 C 1.53007 * 109.49577 * 181.31446 * 11 10 9 14 14 C 1.53004 * 109.46943 * 175.06437 * 13 11 10 15 15 N 1.46494 * 109.47234 * 179.97438 * 14 13 11 16 16 C 1.36938 * 120.00188 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99810 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00095 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99781 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00121 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47012 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47317 * 119.99823 * 20 18 16 23 23 H 1.48496 * 109.47152 * 239.99995 * 20 18 16 24 24 C 1.46928 * 120.60303 * 174.89575 * 7 5 3 25 25 H 1.09000 * 109.47278 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47517 * 300.00878 * 1 2 3 27 27 H 1.09000 * 109.46976 * 60.00304 * 1 2 3 28 28 H 1.07995 * 119.99567 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46893 * 275.53154 * 4 3 2 30 30 H 1.09000 * 109.47227 * 35.53605 * 4 3 2 31 31 H 1.09001 * 109.46895 * 155.54066 * 4 3 2 32 32 H 1.09000 * 109.58346 * 6.65007 * 8 7 5 33 33 H 1.08999 * 109.58782 * 246.22094 * 8 7 5 34 34 H 1.09001 * 109.49953 * 294.68491 * 9 8 7 35 35 H 1.09005 * 109.49608 * 174.58499 * 9 8 7 36 36 H 1.09000 * 109.46647 * 178.61369 * 10 9 8 37 37 H 1.08997 * 109.46289 * 58.64936 * 10 9 8 38 38 H 1.09000 * 109.47030 * 55.07049 * 13 11 10 39 39 H 1.08995 * 109.46953 * 295.06389 * 13 11 10 40 40 H 1.09000 * 109.47183 * 300.00258 * 14 13 11 41 41 H 1.09005 * 109.46673 * 59.99972 * 14 13 11 42 42 H 0.97005 * 119.99971 * 0.02562 * 15 14 13 43 43 H 0.97004 * 120.00241 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.56326 * 113.76731 * 24 7 5 45 45 H 1.08993 * 109.61749 * 353.33952 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1518 0.0006 6 8 4.2506 1.3067 1.0426 7 7 4.3174 0.9800 -1.1536 8 6 3.6017 0.6802 -2.4013 9 6 4.0206 1.6980 -3.4668 10 6 5.5452 1.6928 -3.5999 11 6 6.1767 2.1012 -2.2671 12 1 5.8208 3.0919 -1.9842 13 6 7.6998 2.1275 -2.4105 14 6 8.3248 2.6537 -1.1168 15 7 9.7832 2.6783 -1.2538 16 6 10.5612 3.1158 -0.2153 17 1 10.0996 3.4423 0.7049 18 6 11.9430 3.1396 -0.3454 19 7 12.5053 2.7422 -1.4670 20 14 13.0043 3.7357 1.0715 21 1 12.1355 4.1244 2.2113 22 1 13.9206 2.6469 1.4958 23 1 13.8005 4.9102 0.6336 24 6 5.7822 1.0886 -1.1874 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 2.0469 -0.9353 0.0004 29 1 1.1514 2.7217 -1.0237 30 1 0.5123 2.3535 0.5964 31 1 2.0468 3.2393 0.4250 32 1 2.5272 0.7498 -2.2319 33 1 3.8565 -0.3253 -2.7362 34 1 3.6845 2.6922 -3.1723 35 1 3.5711 1.4297 -4.4229 36 1 5.8445 2.3985 -4.3749 37 1 5.8828 0.6923 -3.8702 38 1 7.9755 2.7802 -3.2388 39 1 8.0638 1.1189 -2.6059 40 1 7.9608 3.6623 -0.9214 41 1 8.0490 2.0010 -0.2885 42 1 10.1977 2.3854 -2.0805 43 1 13.4710 2.7584 -1.5578 44 1 6.2150 0.1163 -1.4228 45 1 6.1464 1.4278 -0.2177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698669751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:52 Heat of formation + Delta-G solvation = -51.903984 kcal Electronic energy + Delta-G solvation = -22201.517216 eV Core-core repulsion = 19024.743853 eV Total energy + Delta-G solvation = -3176.773362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43019 -39.03449 -37.00883 -36.63384 -34.89529 -33.38280 -32.33313 -30.29168 -29.10751 -27.60841 -26.01195 -25.83379 -24.04101 -22.51879 -22.01720 -20.73486 -19.34147 -19.04242 -17.89641 -17.30029 -16.74644 -16.35969 -16.18974 -15.53760 -15.37464 -15.27772 -14.87989 -14.66828 -14.56168 -14.28167 -14.17011 -13.69807 -13.47171 -13.38557 -13.31412 -13.01264 -12.91999 -12.86738 -12.60938 -12.32818 -12.21293 -12.12328 -11.98361 -11.91128 -11.77700 -11.56505 -11.21932 -10.97073 -10.90044 -9.87475 -9.70939 -9.05760 -8.00574 -5.30055 0.81971 1.43406 1.44712 1.46855 1.55460 2.02979 2.51948 3.32363 3.45328 3.63233 3.81244 3.88114 4.01032 4.07271 4.08934 4.28744 4.34951 4.39606 4.47406 4.50098 4.52931 4.65158 4.69089 4.72984 4.82823 4.83973 4.86229 4.89435 4.92197 5.03644 5.05739 5.12392 5.15204 5.21806 5.29609 5.34831 5.43352 5.46988 5.49477 5.54560 5.68333 6.22730 6.34763 7.05349 7.28408 8.02984 8.28509 9.23160 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025789 B = 0.003294 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.453870 B = 8498.847606 C = 9256.149836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C -0.183 4.183 4 C -0.101 4.101 5 C 0.544 3.456 6 O -0.597 6.597 7 N -0.602 5.602 8 C 0.102 3.898 9 C -0.127 4.127 10 C -0.112 4.112 11 C -0.083 4.083 12 H 0.063 0.937 13 C -0.104 4.104 14 C 0.150 3.850 15 N -0.746 5.746 16 C -0.252 4.252 17 H 0.068 0.932 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.975 3.025 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.287 1.287 24 C 0.115 3.885 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.009 0.991 41 H 0.011 0.989 42 H 0.376 0.624 43 H 0.254 0.746 44 H 0.072 0.928 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.786 -5.899 -6.477 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.123 4.123 3 C -0.185 4.185 4 C -0.157 4.157 5 C 0.334 3.666 6 O -0.478 6.478 7 N -0.333 5.333 8 C -0.019 4.019 9 C -0.165 4.165 10 C -0.149 4.149 11 C -0.103 4.103 12 H 0.081 0.919 13 C -0.142 4.142 14 C 0.024 3.976 15 N -0.389 5.389 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.804 3.196 21 H -0.195 1.195 22 H -0.215 1.215 23 H -0.214 1.214 24 C -0.008 4.008 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.027 0.973 41 H 0.029 0.971 42 H 0.208 0.792 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.462 -5.756 -5.777 30.570 hybrid contribution 1.670 0.254 0.788 1.864 sum -27.792 -5.502 -4.989 28.767 Atomic orbital electron populations 1.20953 0.89458 1.03961 1.03433 1.23482 0.98239 0.95670 0.94907 1.21340 0.90258 0.98954 1.07988 1.20723 0.99446 0.91701 1.03867 1.19396 0.89504 0.74817 0.82836 1.90804 1.71402 1.52161 1.33451 1.48311 1.06964 1.68858 1.09177 1.22082 0.97929 0.99627 0.82283 1.21908 0.95301 0.99504 0.99775 1.21583 0.95641 1.02635 0.95075 1.21329 0.94021 0.98550 0.96406 0.91891 1.21598 0.94305 1.01551 0.96790 1.20842 0.83312 0.96714 0.96763 1.42577 1.01560 1.78552 1.16198 1.19650 0.89293 1.34628 0.94783 0.91386 1.25593 0.97821 1.03016 1.00156 1.69814 1.09792 1.55179 1.27029 0.85048 0.78560 0.77334 0.78676 1.19519 1.21542 1.21402 1.21640 0.79774 0.99652 0.99755 0.90461 0.90535 0.89112 0.87353 0.88681 0.88993 0.93864 0.87609 0.89901 0.91805 0.87529 0.90625 0.90839 0.91163 0.91570 0.97258 0.97116 0.79209 0.93746 0.90935 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 8.98 71.24 0.64 -0.22 16 2 C -0.10 -1.45 9.32 24.52 0.23 -1.22 16 3 C -0.18 -3.48 4.03 -18.70 -0.08 -3.56 16 4 C -0.10 -1.45 9.45 71.23 0.67 -0.78 16 5 C 0.54 15.61 7.04 86.57 0.61 16.22 16 6 O -0.60 -23.91 16.54 -4.08 -0.07 -23.98 16 7 N -0.60 -14.62 2.97 -823.17 -2.45 -17.07 16 8 C 0.10 1.47 6.29 86.36 0.54 2.02 16 9 C -0.13 -1.65 6.08 30.67 0.19 -1.47 16 10 C -0.11 -2.03 5.17 30.62 0.16 -1.87 16 11 C -0.08 -2.20 2.34 -10.71 -0.03 -2.22 16 12 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 13 C -0.10 -3.45 4.80 30.60 0.15 -3.30 16 14 C 0.15 6.67 6.02 86.38 0.52 7.19 16 15 N -0.75 -41.01 5.60 -343.45 -1.92 -42.93 16 16 C -0.25 -15.17 9.99 84.03 0.84 -14.33 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 18 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 19 N -0.97 -61.19 13.06 21.65 0.28 -60.91 16 20 Si 0.98 48.37 29.55 68.60 2.03 50.39 16 21 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 24 C 0.11 3.34 5.31 86.36 0.46 3.80 16 25 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.08 0.53 7.41 -2.38 -0.02 0.52 16 27 H 0.09 0.35 8.10 -2.39 -0.02 0.33 16 28 H 0.11 1.61 8.05 -2.91 -0.02 1.58 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.96 6.72 -2.39 -0.02 0.94 16 31 H 0.04 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.11 1.12 5.91 -2.39 -0.01 1.11 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.01 0.51 6.70 -2.38 -0.02 0.49 16 42 H 0.38 21.35 7.67 -92.70 -0.71 20.64 16 43 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.07 2.01 8.14 -2.38 -0.02 2.00 16 45 H 0.06 2.20 5.76 -2.39 -0.01 2.19 16 Total: -1.00 -78.25 357.59 3.49 -74.76 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.24 Total: 23.45 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.37 Total: -3.72 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -4.09 Total: -120.91 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.07 Total: -23.98 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.39 kcal Total: -78.25 3.49 -74.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698669751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.860 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds