Wall clock time and date at job start Fri Apr 10 2020 17:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 C 1.52998 * 109.47244 * 120.00502 * 2 1 3 5 5 C 1.52997 * 109.47593 * 64.99442 * 4 2 1 6 6 H 1.08995 * 109.47318 * 305.00810 * 5 4 2 7 7 C 1.52992 * 109.47293 * 184.99993 * 5 4 2 8 8 N 1.46503 * 109.46950 * 185.00146 * 7 5 4 9 9 C 1.36944 * 119.99956 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99653 * 0.02562 * 9 8 7 11 11 C 1.38811 * 119.99893 * 179.97438 * 9 8 7 12 12 N 1.31612 * 120.00036 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99783 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47132 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47312 * 120.00359 * 13 11 9 16 16 H 1.48504 * 109.47019 * 240.00018 * 13 11 9 17 17 N 1.46503 * 109.46636 * 64.99968 * 5 4 2 18 18 C 1.34778 * 120.00243 * 275.00103 * 17 5 4 19 19 O 1.21613 * 120.00122 * 0.02562 * 18 17 5 20 20 C 1.47106 * 119.99943 * 180.02562 * 18 17 5 21 21 C 1.32874 * 124.76759 * 179.97438 * 20 18 17 22 22 C 1.51119 * 110.80017 * 179.97438 * 21 20 18 23 23 C 1.54574 * 104.83668 * 343.43160 * 22 21 20 24 24 C 1.51112 * 124.62065 * 359.97438 * 20 18 17 25 25 H 1.08998 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46769 * 299.99897 * 1 2 3 27 27 H 1.09001 * 109.46877 * 59.99759 * 1 2 3 28 28 H 1.09002 * 109.46769 * 240.00103 * 2 1 3 29 29 H 1.09004 * 109.47232 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47403 * 299.99919 * 3 2 1 31 31 H 1.09002 * 109.47177 * 60.00353 * 3 2 1 32 32 H 1.09001 * 109.46740 * 304.99254 * 4 2 1 33 33 H 1.08999 * 109.47023 * 184.99877 * 4 2 1 34 34 H 1.08995 * 109.47411 * 304.99916 * 7 5 4 35 35 H 1.08994 * 109.47223 * 65.00760 * 7 5 4 36 36 H 0.96999 * 119.99993 * 0.02562 * 8 7 5 37 37 H 0.97000 * 120.00249 * 179.97438 * 12 11 9 38 38 H 0.97004 * 119.99788 * 94.99991 * 17 5 4 39 39 H 1.08000 * 124.58150 * 359.97438 * 21 20 18 40 40 H 1.09003 * 110.36283 * 224.59007 * 22 21 20 41 41 H 1.09000 * 110.45170 * 102.32072 * 22 21 20 42 42 H 1.08994 * 110.98601 * 266.91919 * 23 22 21 43 43 H 1.09005 * 110.98070 * 143.12853 * 23 22 21 44 44 H 1.09002 * 110.36615 * 77.71980 * 24 20 18 45 45 H 1.08995 * 110.36540 * 315.50917 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5564 -2.2707 1.0526 7 6 2.0355 -2.8889 2.4917 8 7 1.7570 -4.3234 2.3873 9 6 2.0360 -5.1535 3.4401 10 1 2.4610 -4.7505 4.3475 11 6 1.7716 -6.5126 3.3414 12 7 1.2533 -7.0035 2.2358 13 14 2.1516 -7.6447 4.7778 14 1 2.7252 -6.8518 5.8947 15 1 0.9017 -8.3065 5.2306 16 1 3.1306 -8.6760 4.3497 17 7 2.3147 -2.8421 0.0625 18 6 1.7814 -2.7778 -1.1737 19 8 0.7364 -2.1827 -1.3549 20 6 2.4634 -3.4275 -2.3036 21 6 2.0236 -3.4242 -3.5574 22 6 2.9681 -4.1843 -4.4595 23 6 4.2797 -4.3019 -3.6501 24 6 3.7627 -4.1917 -2.1977 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 3.1264 -0.6444 1.2950 34 1 3.0997 -2.7376 2.6719 35 1 1.4634 -2.4670 3.3180 36 1 1.3756 -4.6853 1.5722 37 1 1.0688 -7.9533 2.1666 38 1 3.1485 -3.3164 0.2069 39 1 1.1143 -2.9433 -3.8868 40 1 3.1401 -3.6298 -5.3821 41 1 2.5691 -5.1740 -4.6814 42 1 4.9587 -3.4825 -3.8856 43 1 4.7592 -5.2657 -3.8219 44 1 3.5866 -5.1836 -1.7814 45 1 4.4759 -3.6439 -1.5819 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698867070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:12 Heat of formation + Delta-G solvation = -30.235622 kcal Electronic energy + Delta-G solvation = -22924.507645 eV Core-core repulsion = 19748.673893 eV Total energy + Delta-G solvation = -3175.833752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.01168 -38.05005 -36.35823 -34.91539 -33.38313 -31.23413 -29.63785 -28.85819 -28.01588 -26.84760 -25.52930 -23.10060 -22.21485 -21.00377 -20.23109 -19.61324 -18.48191 -17.22571 -16.81608 -15.91597 -15.73319 -15.24339 -14.78654 -14.20015 -13.98238 -13.68456 -13.30652 -12.99943 -12.87743 -12.84192 -12.70341 -12.10836 -12.01840 -11.99328 -11.77861 -11.60886 -11.48168 -11.23611 -11.15796 -11.01265 -10.95079 -10.82633 -10.48354 -10.21412 -10.18970 -9.95967 -9.71677 -9.40198 -8.92211 -8.83214 -8.48546 -6.95643 -5.78254 -3.07892 1.58098 3.41516 3.47435 3.49659 3.59194 3.69794 4.54090 4.56161 4.63337 4.96240 4.99129 5.14922 5.22402 5.23225 5.32163 5.53887 5.59048 5.64551 5.69016 5.72399 5.75270 5.79018 5.83420 5.91169 5.93702 6.01754 6.07950 6.13711 6.15635 6.18687 6.24295 6.33046 6.42027 6.48977 6.53061 6.63898 6.70164 6.73290 6.89876 7.04355 7.68317 7.99992 8.39574 8.66940 9.51519 10.07967 10.43556 11.44085 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.005734 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.713400 B = 4882.146153 C = 6619.804775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.121 4.121 5 C 0.135 3.865 6 H 0.091 0.909 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.241 4.241 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.703 5.703 18 C 0.563 3.437 19 O -0.540 6.540 20 C -0.180 4.180 21 C -0.088 4.088 22 C -0.105 4.105 23 C -0.122 4.122 24 C -0.094 4.094 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.033 0.967 36 H 0.386 0.614 37 H 0.254 0.746 38 H 0.403 0.597 39 H 0.135 0.865 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 11.107 -11.106 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.160 4.160 5 C 0.031 3.969 6 H 0.109 0.891 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.372 4.372 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.353 5.353 18 C 0.351 3.649 19 O -0.420 6.420 20 C -0.183 4.183 21 C -0.108 4.108 22 C -0.142 4.142 23 C -0.160 4.160 24 C -0.131 4.131 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.238 0.762 39 H 0.153 0.847 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.655 11.471 -11.022 16.575 hybrid contribution 0.425 -1.093 0.684 1.358 sum 5.081 10.378 -10.337 15.504 Atomic orbital electron populations 1.21826 0.94980 1.03103 0.99536 1.21140 0.96573 0.94738 0.98672 1.21869 1.00287 0.97078 1.01081 1.22014 1.00770 0.94925 0.98333 1.21368 0.98488 0.91018 0.86058 0.89146 1.20965 0.97776 0.86498 0.93199 1.42359 1.76583 1.00916 1.17708 1.19265 1.34760 0.88936 0.94279 0.91121 1.24742 1.01741 0.96939 0.97408 1.69679 1.49515 1.12661 1.26030 0.86129 0.77442 0.80946 0.81726 1.20567 1.21877 1.21899 1.45873 1.27194 1.55085 1.07127 1.17886 0.84566 0.79624 0.82796 1.90755 1.22978 1.43612 1.84680 1.21984 0.99311 1.02585 0.94457 1.23993 0.98264 0.94681 0.93863 1.21440 0.94331 1.00227 0.98155 1.22408 0.96807 1.02203 0.94536 1.21270 0.93780 1.00531 0.97550 0.90501 0.94359 0.93935 0.90639 0.93380 0.93304 0.93147 0.91214 0.92058 0.95912 0.94963 0.77965 0.93566 0.76192 0.84728 0.90698 0.89839 0.91142 0.90654 0.89590 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.03 37.16 0.30 -1.74 16 2 C -0.09 -1.31 2.38 -90.62 -0.22 -1.52 16 3 C -0.15 -1.73 9.19 37.16 0.34 -1.39 16 4 C -0.12 -1.72 4.36 -26.73 -0.12 -1.83 16 5 C 0.14 2.29 2.33 -67.93 -0.16 2.13 16 6 H 0.09 1.73 5.92 -51.93 -0.31 1.42 16 7 C 0.14 2.81 5.82 -4.04 -0.02 2.79 16 8 N -0.73 -18.12 5.43 -59.91 -0.33 -18.44 16 9 C -0.24 -6.64 9.99 -15.06 -0.15 -6.80 16 10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 13 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 N -0.70 -11.50 4.46 -54.99 -0.25 -11.74 16 18 C 0.56 9.42 6.35 -12.66 -0.08 9.34 16 19 O -0.54 -10.06 11.73 5.27 0.06 -10.00 16 20 C -0.18 -2.57 6.11 -102.67 -0.63 -3.20 16 21 C -0.09 -1.11 10.45 -35.95 -0.38 -1.49 16 22 C -0.10 -1.02 6.80 -26.85 -0.18 -1.20 16 23 C -0.12 -1.18 7.16 -25.09 -0.18 -1.36 16 24 C -0.09 -1.15 6.02 -26.86 -0.16 -1.31 16 25 H 0.08 1.33 4.75 -51.93 -0.25 1.08 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.20 5.19 -51.93 -0.27 0.93 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.39 10.27 7.33 -40.82 -0.30 9.97 16 37 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.40 6.41 7.61 -40.82 -0.31 6.10 16 39 H 0.13 1.69 8.04 -52.49 -0.42 1.26 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -30.63 352.84 -8.94 -39.57 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -7.73 Total: 13.36 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.73 Total: -8.03 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.15 Total: -57.42 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.06 Total: -10.00 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.63 -8.94 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698867070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.339 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds