Wall clock time and date at job start Fri Apr 10 2020 17:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 C 1.52998 * 109.47244 * 120.00502 * 2 1 3 5 5 C 1.52997 * 109.47593 * 64.99442 * 4 2 1 6 6 H 1.08995 * 109.47318 * 305.00810 * 5 4 2 7 7 C 1.52992 * 109.47293 * 184.99993 * 5 4 2 8 8 N 1.46503 * 109.46950 * 185.00146 * 7 5 4 9 9 C 1.36944 * 119.99956 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99653 * 0.02562 * 9 8 7 11 11 C 1.38811 * 119.99893 * 179.97438 * 9 8 7 12 12 N 1.31612 * 120.00036 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99783 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47132 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47312 * 120.00359 * 13 11 9 16 16 H 1.48504 * 109.47019 * 240.00018 * 13 11 9 17 17 N 1.46503 * 109.46636 * 64.99968 * 5 4 2 18 18 C 1.34778 * 120.00243 * 275.00103 * 17 5 4 19 19 O 1.21613 * 120.00122 * 0.02562 * 18 17 5 20 20 C 1.47106 * 119.99943 * 180.02562 * 18 17 5 21 21 C 1.32874 * 124.76759 * 179.97438 * 20 18 17 22 22 C 1.51119 * 110.80017 * 179.97438 * 21 20 18 23 23 C 1.54574 * 104.83668 * 343.43160 * 22 21 20 24 24 C 1.51112 * 124.62065 * 359.97438 * 20 18 17 25 25 H 1.08998 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46769 * 299.99897 * 1 2 3 27 27 H 1.09001 * 109.46877 * 59.99759 * 1 2 3 28 28 H 1.09002 * 109.46769 * 240.00103 * 2 1 3 29 29 H 1.09004 * 109.47232 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47403 * 299.99919 * 3 2 1 31 31 H 1.09002 * 109.47177 * 60.00353 * 3 2 1 32 32 H 1.09001 * 109.46740 * 304.99254 * 4 2 1 33 33 H 1.08999 * 109.47023 * 184.99877 * 4 2 1 34 34 H 1.08995 * 109.47411 * 304.99916 * 7 5 4 35 35 H 1.08994 * 109.47223 * 65.00760 * 7 5 4 36 36 H 0.96999 * 119.99993 * 0.02562 * 8 7 5 37 37 H 0.97000 * 120.00249 * 179.97438 * 12 11 9 38 38 H 0.97004 * 119.99788 * 94.99991 * 17 5 4 39 39 H 1.08000 * 124.58150 * 359.97438 * 21 20 18 40 40 H 1.09003 * 110.36283 * 224.59007 * 22 21 20 41 41 H 1.09000 * 110.45170 * 102.32072 * 22 21 20 42 42 H 1.08994 * 110.98601 * 266.91919 * 23 22 21 43 43 H 1.09005 * 110.98070 * 143.12853 * 23 22 21 44 44 H 1.09002 * 110.36615 * 77.71980 * 24 20 18 45 45 H 1.08995 * 110.36540 * 315.50917 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5564 -2.2707 1.0526 7 6 2.0355 -2.8889 2.4917 8 7 1.7570 -4.3234 2.3873 9 6 2.0360 -5.1535 3.4401 10 1 2.4610 -4.7505 4.3475 11 6 1.7716 -6.5126 3.3414 12 7 1.2533 -7.0035 2.2358 13 14 2.1516 -7.6447 4.7778 14 1 2.7252 -6.8518 5.8947 15 1 0.9017 -8.3065 5.2306 16 1 3.1306 -8.6760 4.3497 17 7 2.3147 -2.8421 0.0625 18 6 1.7814 -2.7778 -1.1737 19 8 0.7364 -2.1827 -1.3549 20 6 2.4634 -3.4275 -2.3036 21 6 2.0236 -3.4242 -3.5574 22 6 2.9681 -4.1843 -4.4595 23 6 4.2797 -4.3019 -3.6501 24 6 3.7627 -4.1917 -2.1977 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 3.1264 -0.6444 1.2950 34 1 3.0997 -2.7376 2.6719 35 1 1.4634 -2.4670 3.3180 36 1 1.3756 -4.6853 1.5722 37 1 1.0688 -7.9533 2.1666 38 1 3.1485 -3.3164 0.2069 39 1 1.1143 -2.9433 -3.8868 40 1 3.1401 -3.6298 -5.3821 41 1 2.5691 -5.1740 -4.6814 42 1 4.9587 -3.4825 -3.8856 43 1 4.7592 -5.2657 -3.8219 44 1 3.5866 -5.1836 -1.7814 45 1 4.4759 -3.6439 -1.5819 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698867070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:11 Heat of formation + Delta-G solvation = -48.488433 kcal Electronic energy + Delta-G solvation = -22925.299146 eV Core-core repulsion = 19748.673893 eV Total energy + Delta-G solvation = -3176.625253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26829 -39.09675 -37.68303 -36.44172 -35.00196 -33.02951 -31.02617 -29.93598 -29.01098 -27.94859 -27.19222 -24.77627 -23.63094 -22.09468 -21.40289 -20.81212 -19.76074 -19.06402 -18.04211 -17.23788 -16.96038 -16.60059 -16.18338 -15.68691 -15.39142 -15.13234 -14.81452 -14.52155 -14.31793 -13.91148 -13.64230 -13.57702 -13.19918 -13.07406 -12.96809 -12.84569 -12.80219 -12.56871 -12.52584 -12.33905 -12.05577 -12.04847 -11.97839 -11.89469 -11.62465 -11.39565 -11.24764 -10.99458 -10.68737 -9.95806 -9.72148 -9.01414 -7.94468 -5.24204 0.47399 1.47785 1.48587 1.58568 2.31654 2.45724 2.56009 3.39830 3.57467 3.66129 3.72068 3.99010 4.08696 4.14909 4.22179 4.24597 4.35414 4.38183 4.42629 4.66678 4.78174 4.81546 4.85129 4.88349 4.88843 4.90343 4.92692 4.98854 4.99289 5.09309 5.16218 5.17415 5.24264 5.36980 5.38814 5.42634 5.50665 5.55586 5.62348 5.66264 5.70170 6.26121 6.69301 7.33335 7.37054 8.06885 8.31047 9.28830 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.005734 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.713400 B = 4882.146153 C = 6619.804775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.112 4.112 5 C 0.145 3.855 6 H 0.064 0.936 7 C 0.145 3.855 8 N -0.742 5.742 9 C -0.243 4.243 10 H 0.079 0.921 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.973 3.027 14 H -0.265 1.265 15 H -0.297 1.297 16 H -0.293 1.293 17 N -0.702 5.702 18 C 0.556 3.444 19 O -0.567 6.567 20 C -0.212 4.212 21 C -0.075 4.075 22 C -0.102 4.102 23 C -0.115 4.115 24 C -0.092 4.092 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.374 0.626 37 H 0.250 0.750 38 H 0.405 0.595 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 12.107 -11.259 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 C -0.197 4.197 4 C -0.151 4.151 5 C 0.040 3.960 6 H 0.082 0.918 7 C 0.018 3.982 8 N -0.385 5.385 9 C -0.375 4.375 10 H 0.097 0.903 11 C -0.266 4.266 12 N -0.619 5.619 13 Si 0.802 3.198 14 H -0.189 1.189 15 H -0.225 1.225 16 H -0.220 1.220 17 N -0.351 5.351 18 C 0.346 3.654 19 O -0.449 6.449 20 C -0.215 4.215 21 C -0.094 4.094 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.129 4.129 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.206 0.794 37 H 0.059 0.941 38 H 0.240 0.760 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.267 12.512 -11.153 17.894 hybrid contribution -0.123 -1.339 0.696 1.514 sum 6.144 11.173 -10.457 16.490 Atomic orbital electron populations 1.21753 0.95784 1.01328 1.00097 1.21069 0.95840 0.96204 0.97695 1.21803 1.00887 0.95173 1.01840 1.21950 1.01637 0.92596 0.98945 1.21185 0.97032 0.92718 0.85051 0.91804 1.21114 0.98430 0.83936 0.94748 1.42530 1.76468 1.02873 1.16642 1.19677 1.33354 0.89489 0.94932 0.90325 1.25550 1.02526 0.98585 0.99931 1.69843 1.51418 1.12541 1.28145 0.85079 0.76753 0.78832 0.79099 1.18894 1.22470 1.21977 1.45839 1.27104 1.55130 1.07054 1.18341 0.84375 0.79313 0.83387 1.90737 1.24129 1.44902 1.85103 1.22039 1.00876 1.04437 0.94185 1.24339 0.98075 0.93102 0.93915 1.21519 0.93465 1.00415 0.98413 1.22427 0.96938 1.03590 0.92249 1.21254 0.93029 0.99031 0.99612 0.93421 0.93093 0.93971 0.92523 0.92376 0.92918 0.92047 0.90013 0.90682 0.94445 0.94608 0.79446 0.94140 0.76002 0.85135 0.88152 0.89017 0.89683 0.89294 0.91615 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 8.03 71.98 0.58 -3.36 16 2 C -0.09 -2.46 2.38 -10.79 -0.03 -2.48 16 3 C -0.14 -3.02 9.19 71.98 0.66 -2.36 16 4 C -0.11 -3.05 4.36 30.59 0.13 -2.92 16 5 C 0.15 4.96 2.33 44.99 0.10 5.06 16 6 H 0.06 2.55 5.92 -2.39 -0.01 2.54 16 7 C 0.14 5.61 5.82 86.38 0.50 6.11 16 8 N -0.74 -37.24 5.43 -343.47 -1.87 -39.11 16 9 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16 10 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 11 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 12 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 13 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 14 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 16 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 17 N -0.70 -23.51 4.46 -446.15 -1.99 -25.50 16 18 C 0.56 19.24 6.35 86.57 0.55 19.79 16 19 O -0.57 -22.03 11.73 -4.07 -0.05 -22.08 16 20 C -0.21 -6.12 6.11 -18.58 -0.11 -6.24 16 21 C -0.07 -1.83 10.45 24.64 0.26 -1.58 16 22 C -0.10 -1.75 6.80 30.52 0.21 -1.55 16 23 C -0.11 -1.97 7.16 31.66 0.23 -1.75 16 24 C -0.09 -2.22 6.02 30.51 0.18 -2.03 16 25 H 0.05 1.70 4.75 -2.39 -0.01 1.69 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.79 5.19 -2.39 -0.01 1.78 16 29 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.37 20.49 7.33 -92.71 -0.68 19.81 16 37 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.40 13.14 7.61 -92.71 -0.71 12.43 16 39 H 0.13 3.26 8.04 -2.91 -0.02 3.24 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 1.71 7.83 -2.39 -0.02 1.69 16 Total: -1.00 -66.54 352.84 2.57 -63.97 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -0.41 Total: 43.50 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.57 Total: -9.52 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -3.57 Total: -123.75 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -66.54 2.57 -63.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698867070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.484 kcal (2) G-P(sol) polarization free energy of solvation -66.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds