Wall clock time and date at job start Fri Apr 10 2020 17:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47442 * 2 1 4 4 H 1.09003 * 109.46857 * 305.00524 * 3 2 1 5 5 N 1.46500 * 109.46717 * 64.99712 * 3 2 1 6 6 C 1.34773 * 120.00214 * 268.63894 * 5 3 2 7 7 O 1.21586 * 120.00026 * 5.36566 * 6 5 3 8 8 N 1.34782 * 120.00008 * 185.36619 * 6 5 3 9 9 C 1.46925 * 120.62950 * 175.21360 * 8 6 5 10 10 C 1.53191 * 108.89253 * 233.55436 * 9 8 6 11 11 C 1.53075 * 109.29853 * 305.58346 * 10 9 8 12 12 C 1.50694 * 109.44045 * 181.23822 * 11 10 9 13 13 H 1.08012 * 119.99447 * 239.79146 * 12 11 10 14 14 C 1.37870 * 120.00751 * 59.79155 * 12 11 10 15 15 N 1.31515 * 119.99974 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00555 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46698 * 59.99998 * 16 14 12 18 18 H 1.48495 * 109.47238 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47211 * 300.00460 * 16 14 12 20 20 C 1.53041 * 109.65757 * 61.14862 * 11 10 9 21 21 C 1.46928 * 120.62972 * 355.23391 * 8 6 5 22 22 C 1.52994 * 109.47340 * 185.00069 * 3 2 1 23 23 C 1.53001 * 117.50131 * 124.72053 * 22 3 2 24 24 C 1.52996 * 117.49963 * 56.09650 * 22 3 2 25 25 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47176 * 299.99965 * 1 2 3 27 27 H 1.08996 * 109.47399 * 59.99766 * 1 2 3 28 28 H 1.08998 * 109.46838 * 239.99662 * 2 1 3 29 29 H 1.08999 * 109.46923 * 120.00354 * 2 1 3 30 30 H 0.97004 * 119.99617 * 88.64717 * 5 3 2 31 31 H 1.08993 * 109.58984 * 353.41878 * 9 8 6 32 32 H 1.09000 * 109.58745 * 113.70056 * 9 8 6 33 33 H 1.09007 * 109.49843 * 65.39042 * 10 9 8 34 34 H 1.08998 * 109.49720 * 185.48505 * 10 9 8 35 35 H 1.09007 * 109.34144 * 301.12405 * 11 10 9 36 36 H 0.97001 * 120.00265 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.49104 * 178.75126 * 20 11 10 38 38 H 1.08999 * 109.52393 * 58.67195 * 20 11 10 39 39 H 1.09000 * 109.58330 * 246.16038 * 21 8 6 40 40 H 1.08994 * 109.58624 * 6.44155 * 21 8 6 41 41 H 1.09001 * 115.54846 * 270.43288 * 22 3 2 42 42 H 1.08997 * 117.49580 * 0.02562 * 23 22 3 43 43 H 1.08995 * 117.49969 * 145.01579 * 23 22 3 44 44 H 1.09004 * 117.50214 * 214.97875 * 24 22 3 45 45 H 1.09000 * 117.50057 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4896 2.7745 1.3261 7 8 -0.2830 2.7608 0.3873 8 7 0.1830 3.4670 2.4411 9 6 -1.0299 4.2942 2.4987 10 6 -0.6423 5.7138 2.9248 11 6 0.1426 5.6514 4.2374 12 6 0.4993 7.0485 4.6754 13 1 1.5355 7.3285 4.7962 14 6 -0.4968 7.9693 4.9218 15 7 -1.7585 7.6282 4.7752 16 14 -0.0546 9.7009 5.4654 17 1 0.7824 10.3482 4.4233 18 1 -1.2969 10.4903 5.6625 19 1 0.7022 9.6411 6.7416 20 6 1.4230 4.8383 4.0335 21 6 1.0556 3.4093 3.6218 22 6 3.5648 1.4442 -0.1257 23 6 4.1782 2.2501 -1.2726 24 6 4.1754 0.7211 -1.3279 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2329 2.0437 2.0272 31 1 -1.4996 4.3232 1.5156 32 1 -1.7258 3.8724 3.2238 33 1 -0.0212 6.1685 2.1530 34 1 -1.5437 6.3103 3.0652 35 1 -0.4712 5.1765 5.0029 36 1 -2.4594 8.2759 4.9489 37 1 1.9906 4.8143 4.9638 38 1 2.0262 5.2988 3.2511 39 1 0.5307 2.9166 4.4402 40 1 1.9607 2.8522 3.3803 41 1 4.1141 1.4088 0.8151 42 1 3.4954 2.7794 -1.9372 43 1 5.1312 2.7453 -1.0863 44 1 5.1267 0.2104 -1.1781 45 1 3.4908 0.2445 -2.0294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595790829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:35 Heat of formation + Delta-G solvation = -15.765345 kcal Electronic energy + Delta-G solvation = -22931.125252 eV Core-core repulsion = 19755.918979 eV Total energy + Delta-G solvation = -3175.206273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16759 -38.23909 -36.72412 -34.49802 -33.57360 -32.08711 -30.88963 -29.94258 -26.95059 -25.79845 -23.12169 -22.79184 -22.19082 -21.83672 -20.46646 -20.12765 -18.68870 -17.56489 -16.69511 -16.28544 -15.40537 -15.13009 -14.59160 -14.49829 -14.28762 -13.83912 -13.51771 -13.08399 -12.91819 -12.72679 -12.54126 -12.46794 -12.13520 -11.79635 -11.72267 -11.47601 -11.10693 -10.98243 -10.91209 -10.78503 -10.66880 -10.62781 -10.40303 -10.20099 -10.04134 -9.65699 -9.53446 -9.16447 -8.92262 -8.78410 -8.34817 -7.84344 -6.00308 -4.07251 3.01765 3.30696 3.35999 3.38105 3.57713 3.67287 4.23846 4.42177 4.45612 4.72466 4.81828 5.03366 5.19318 5.25460 5.29259 5.37763 5.42444 5.47132 5.70892 5.71925 5.78761 5.87651 5.91002 5.93215 5.99337 6.05432 6.08354 6.23371 6.32867 6.44817 6.51402 6.55147 6.64185 6.79363 6.86137 7.00378 7.19576 7.27550 7.53897 7.72803 7.94999 8.08126 8.38182 8.41952 8.95800 9.02760 9.57716 11.04947 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.003910 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.594708 B = 7159.712282 C = 7688.942164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.193 3.807 4 H 0.089 0.911 5 N -0.744 5.744 6 C 0.706 3.294 7 O -0.597 6.597 8 N -0.619 5.619 9 C 0.127 3.873 10 C -0.123 4.123 11 C 0.050 3.950 12 C -0.515 4.515 13 H 0.053 0.947 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.123 4.123 21 C 0.114 3.886 22 C -0.163 4.163 23 C -0.176 4.176 24 C -0.172 4.172 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.393 0.607 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.103 0.897 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.316 -14.277 -7.749 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.087 3.913 4 H 0.107 0.893 5 N -0.402 5.402 6 C 0.408 3.592 7 O -0.477 6.477 8 N -0.355 5.355 9 C 0.005 3.995 10 C -0.161 4.161 11 C 0.031 3.969 12 C -0.553 4.553 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.161 4.161 21 C -0.010 4.010 22 C -0.181 4.181 23 C -0.213 4.213 24 C -0.210 4.210 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.121 0.879 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.542 -14.175 -8.411 18.565 hybrid contribution 0.622 1.007 0.820 1.440 sum 9.164 -13.169 -7.591 17.749 Atomic orbital electron populations 1.21719 0.94849 1.00073 1.03326 1.21930 0.96962 0.96181 1.01764 1.20331 0.90599 0.92921 0.87403 0.89254 1.45298 1.22365 1.57838 1.14702 1.15825 0.81712 0.78498 0.83164 1.90859 1.50306 1.68418 1.38075 1.47445 1.26752 1.48693 1.12640 1.21740 0.84350 0.92031 1.01338 1.22027 1.03415 0.92590 0.98088 1.18615 0.90536 0.94363 0.93340 1.21151 0.92696 0.96176 1.45251 0.92848 1.24956 0.95038 0.98544 0.95374 1.69835 0.98949 1.34913 1.49174 0.86685 0.77677 0.84634 0.79145 1.20364 1.21301 1.20347 1.22002 1.00921 0.93232 0.99988 1.21691 0.92515 0.99153 0.87612 1.22513 0.95132 1.06062 0.94443 1.23046 1.02768 0.93889 1.01567 1.22945 1.02413 0.95059 1.00539 0.93960 0.92270 0.92336 0.91497 0.92158 0.77068 0.90634 0.92736 0.94459 0.87882 0.95540 0.92897 0.92269 0.92925 0.92037 0.92331 0.87582 0.88553 0.88762 0.88708 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.62 37.16 0.32 -1.54 16 2 C -0.13 -1.40 5.49 -26.73 -0.15 -1.55 16 3 C 0.19 2.31 2.49 -67.93 -0.17 2.14 16 4 H 0.09 1.28 7.20 -51.93 -0.37 0.90 16 5 N -0.74 -10.17 4.80 -58.68 -0.28 -10.45 16 6 C 0.71 12.54 7.06 -86.92 -0.61 11.92 16 7 O -0.60 -12.29 13.35 5.29 0.07 -12.22 16 8 N -0.62 -11.27 2.97 -178.51 -0.53 -11.81 16 9 C 0.13 2.60 6.41 -3.71 -0.02 2.57 16 10 C -0.12 -2.86 5.16 -26.59 -0.14 -2.99 16 11 C 0.05 1.19 2.06 -91.71 -0.19 1.00 16 12 C -0.51 -13.72 8.56 -34.45 -0.29 -14.02 16 13 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -24.83 11.30 55.43 0.63 -24.20 16 16 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 21 C 0.11 1.83 6.43 -3.71 -0.02 1.80 16 22 C -0.16 -1.55 5.43 -90.62 -0.49 -2.04 16 23 C -0.18 -1.62 10.18 -26.73 -0.27 -1.89 16 24 C -0.17 -1.36 9.65 -26.73 -0.26 -1.62 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.92 6.06 -51.93 -0.31 0.61 16 27 H 0.06 0.84 7.96 -51.93 -0.41 0.42 16 28 H 0.07 0.62 6.88 -51.93 -0.36 0.26 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.39 4.61 6.06 -40.82 -0.25 4.36 16 31 H 0.08 1.58 7.03 -51.93 -0.37 1.21 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 35 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 41 H 0.11 0.93 8.05 -51.93 -0.42 0.51 16 42 H 0.10 0.95 8.03 -51.93 -0.42 0.53 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.73 7.33 -51.93 -0.38 0.35 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -29.34 345.10 -10.13 -39.47 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.66 Total: 5.18 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.54 Total: -7.13 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.19 Total: -46.46 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.34 -10.13 -39.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595790829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.703 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds