Wall clock time and date at job start Fri Apr 10 2020 17:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47442 * 2 1 4 4 H 1.09003 * 109.46857 * 305.00524 * 3 2 1 5 5 N 1.46500 * 109.46717 * 64.99712 * 3 2 1 6 6 C 1.34773 * 120.00214 * 268.63894 * 5 3 2 7 7 O 1.21586 * 120.00026 * 5.36566 * 6 5 3 8 8 N 1.34782 * 120.00008 * 185.36619 * 6 5 3 9 9 C 1.46925 * 120.62950 * 175.21360 * 8 6 5 10 10 C 1.53191 * 108.89253 * 233.55436 * 9 8 6 11 11 C 1.53075 * 109.29853 * 305.58346 * 10 9 8 12 12 C 1.50694 * 109.44045 * 181.23822 * 11 10 9 13 13 H 1.08012 * 119.99447 * 239.79146 * 12 11 10 14 14 C 1.37870 * 120.00751 * 59.79155 * 12 11 10 15 15 N 1.31515 * 119.99974 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00555 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46698 * 59.99998 * 16 14 12 18 18 H 1.48495 * 109.47238 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47211 * 300.00460 * 16 14 12 20 20 C 1.53041 * 109.65757 * 61.14862 * 11 10 9 21 21 C 1.46928 * 120.62972 * 355.23391 * 8 6 5 22 22 C 1.52994 * 109.47340 * 185.00069 * 3 2 1 23 23 C 1.53001 * 117.50131 * 124.72053 * 22 3 2 24 24 C 1.52996 * 117.49963 * 56.09650 * 22 3 2 25 25 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47176 * 299.99965 * 1 2 3 27 27 H 1.08996 * 109.47399 * 59.99766 * 1 2 3 28 28 H 1.08998 * 109.46838 * 239.99662 * 2 1 3 29 29 H 1.08999 * 109.46923 * 120.00354 * 2 1 3 30 30 H 0.97004 * 119.99617 * 88.64717 * 5 3 2 31 31 H 1.08993 * 109.58984 * 353.41878 * 9 8 6 32 32 H 1.09000 * 109.58745 * 113.70056 * 9 8 6 33 33 H 1.09007 * 109.49843 * 65.39042 * 10 9 8 34 34 H 1.08998 * 109.49720 * 185.48505 * 10 9 8 35 35 H 1.09007 * 109.34144 * 301.12405 * 11 10 9 36 36 H 0.97001 * 120.00265 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.49104 * 178.75126 * 20 11 10 38 38 H 1.08999 * 109.52393 * 58.67195 * 20 11 10 39 39 H 1.09000 * 109.58330 * 246.16038 * 21 8 6 40 40 H 1.08994 * 109.58624 * 6.44155 * 21 8 6 41 41 H 1.09001 * 115.54846 * 270.43288 * 22 3 2 42 42 H 1.08997 * 117.49580 * 0.02562 * 23 22 3 43 43 H 1.08995 * 117.49969 * 145.01579 * 23 22 3 44 44 H 1.09004 * 117.50214 * 214.97875 * 24 22 3 45 45 H 1.09000 * 117.50057 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4896 2.7745 1.3261 7 8 -0.2830 2.7608 0.3873 8 7 0.1830 3.4670 2.4411 9 6 -1.0299 4.2942 2.4987 10 6 -0.6423 5.7138 2.9248 11 6 0.1426 5.6514 4.2374 12 6 0.4993 7.0485 4.6754 13 1 1.5355 7.3285 4.7962 14 6 -0.4968 7.9693 4.9218 15 7 -1.7585 7.6282 4.7752 16 14 -0.0546 9.7009 5.4654 17 1 0.7824 10.3482 4.4233 18 1 -1.2969 10.4903 5.6625 19 1 0.7022 9.6411 6.7416 20 6 1.4230 4.8383 4.0335 21 6 1.0556 3.4093 3.6218 22 6 3.5648 1.4442 -0.1257 23 6 4.1782 2.2501 -1.2726 24 6 4.1754 0.7211 -1.3279 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2329 2.0437 2.0272 31 1 -1.4996 4.3232 1.5156 32 1 -1.7258 3.8724 3.2238 33 1 -0.0212 6.1685 2.1530 34 1 -1.5437 6.3103 3.0652 35 1 -0.4712 5.1765 5.0029 36 1 -2.4594 8.2759 4.9489 37 1 1.9906 4.8143 4.9638 38 1 2.0262 5.2988 3.2511 39 1 0.5307 2.9166 4.4402 40 1 1.9607 2.8522 3.3803 41 1 4.1141 1.4088 0.8151 42 1 3.4954 2.7794 -1.9372 43 1 5.1312 2.7453 -1.0863 44 1 5.1267 0.2104 -1.1781 45 1 3.4908 0.2445 -2.0294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595790829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:33 Heat of formation + Delta-G solvation = -31.823083 kcal Electronic energy + Delta-G solvation = -22931.821568 eV Core-core repulsion = 19755.918979 eV Total energy + Delta-G solvation = -3175.902589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.50318 -39.31708 -38.14729 -35.58248 -35.34596 -33.44218 -32.54323 -31.52132 -28.31457 -27.34130 -24.73310 -23.93145 -23.49799 -22.66480 -21.71788 -21.38882 -20.19053 -18.95440 -18.28754 -17.75346 -16.71184 -16.56149 -16.22788 -15.54557 -15.31578 -15.12229 -14.91228 -14.83477 -14.43591 -14.11045 -13.93586 -13.62015 -13.48629 -13.29195 -12.97323 -12.78219 -12.50269 -12.48250 -12.36911 -12.15208 -11.98681 -11.86738 -11.69223 -11.41828 -11.37045 -11.14975 -10.98175 -10.89258 -10.78797 -10.39581 -10.00950 -9.34164 -8.06426 -6.20702 1.42658 1.43646 1.50861 1.72833 2.23943 2.44642 2.84253 3.05808 3.19995 3.64904 3.99829 4.07698 4.14946 4.18998 4.24602 4.33276 4.34745 4.39076 4.50140 4.54297 4.61498 4.73066 4.81484 4.84464 4.91869 4.99151 5.00933 5.05185 5.11180 5.17033 5.20581 5.23557 5.27873 5.31954 5.46546 5.50741 5.53090 5.66884 5.72205 5.99190 6.12202 6.13865 6.39270 6.90825 7.07735 7.47482 7.65584 8.96716 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.003910 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.594708 B = 7159.712282 C = 7688.942164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.192 3.808 4 H 0.060 0.940 5 N -0.728 5.728 6 C 0.703 3.297 7 O -0.630 6.630 8 N -0.624 5.624 9 C 0.141 3.859 10 C -0.110 4.110 11 C 0.046 3.954 12 C -0.534 4.534 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.916 5.916 16 Si 0.950 3.050 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.269 1.269 20 C -0.114 4.114 21 C 0.118 3.882 22 C -0.167 4.167 23 C -0.189 4.189 24 C -0.153 4.153 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.405 0.595 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.019 0.981 34 H 0.072 0.928 35 H 0.003 0.997 36 H 0.260 0.740 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.842 -15.944 -7.544 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.086 3.914 4 H 0.079 0.921 5 N -0.386 5.386 6 C 0.405 3.595 7 O -0.512 6.512 8 N -0.360 5.360 9 C 0.017 3.983 10 C -0.149 4.149 11 C 0.027 3.973 12 C -0.572 4.572 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.776 3.224 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.194 1.194 20 C -0.153 4.153 21 C -0.004 4.004 22 C -0.185 4.185 23 C -0.226 4.226 24 C -0.190 4.190 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.244 0.756 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.090 0.910 35 H 0.021 0.979 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.133 0.867 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.121 -15.869 -8.196 21.040 hybrid contribution -0.176 1.522 0.717 1.691 sum 10.945 -14.348 -7.480 19.535 Atomic orbital electron populations 1.21662 0.96753 1.00367 1.00856 1.21896 0.95052 0.95558 1.03568 1.20430 0.92437 0.93030 0.85458 0.92146 1.45200 1.20845 1.56649 1.15880 1.15969 0.82490 0.78666 0.82380 1.90840 1.51649 1.69539 1.39157 1.47386 1.26386 1.48561 1.13693 1.21362 0.85508 0.90783 1.00604 1.21778 1.01592 0.93933 0.97579 1.18598 0.92420 0.93855 0.92403 1.21570 0.92693 0.97775 1.45152 0.92897 1.25709 0.95026 1.02192 0.95616 1.69976 0.99699 1.35926 1.49925 0.85734 0.77393 0.80301 0.78942 1.20089 1.21203 1.19437 1.21851 0.98419 0.94443 1.00565 1.21781 0.93937 0.97558 0.87134 1.22447 0.93145 1.07318 0.95639 1.23089 1.02875 0.95154 1.01476 1.23046 1.03014 0.93990 0.98944 0.92234 0.95068 0.94457 0.89326 0.90550 0.75590 0.91643 0.92543 0.96205 0.91000 0.97902 0.93080 0.90857 0.93621 0.90983 0.88109 0.86053 0.90043 0.87886 0.86693 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.62 71.98 0.62 -2.89 16 2 C -0.12 -2.34 5.49 30.59 0.17 -2.17 16 3 C 0.19 4.24 2.49 44.99 0.11 4.35 16 4 H 0.06 1.72 7.20 -2.39 -0.02 1.70 16 5 N -0.73 -18.48 4.80 -457.82 -2.20 -20.68 16 6 C 0.70 24.59 7.06 179.05 1.26 25.85 16 7 O -0.63 -26.43 13.35 -3.99 -0.05 -26.48 16 8 N -0.62 -22.37 2.97 -836.93 -2.49 -24.86 16 9 C 0.14 5.89 6.41 86.36 0.55 6.44 16 10 C -0.11 -5.31 5.16 30.68 0.16 -5.15 16 11 C 0.05 2.21 2.06 -11.50 -0.02 2.18 16 12 C -0.53 -28.78 8.56 25.60 0.22 -28.56 16 13 H 0.05 2.78 7.74 -2.90 -0.02 2.76 16 14 C 0.01 0.72 5.30 84.65 0.45 1.17 16 15 N -0.92 -52.44 11.30 21.44 0.24 -52.19 16 16 Si 0.95 43.31 29.54 68.60 2.03 45.33 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 C -0.11 -4.27 5.30 30.67 0.16 -4.11 16 21 C 0.12 3.54 6.43 86.36 0.56 4.10 16 22 C -0.17 -2.68 5.43 -10.80 -0.06 -2.74 16 23 C -0.19 -3.10 10.18 30.59 0.31 -2.79 16 24 C -0.15 -1.90 9.65 30.59 0.30 -1.61 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.03 0.95 6.06 -2.39 -0.01 0.93 16 27 H 0.04 1.07 7.96 -2.39 -0.02 1.05 16 28 H 0.09 1.35 6.88 -2.39 -0.02 1.33 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.41 8.12 6.06 -92.71 -0.56 7.55 16 31 H 0.07 2.85 7.03 -2.39 -0.02 2.83 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 3.92 6.03 -2.39 -0.01 3.91 16 35 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 36 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.10 2.18 5.57 -2.39 -0.01 2.16 16 41 H 0.12 1.63 8.05 -2.39 -0.02 1.61 16 42 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 1.20 7.33 -2.39 -0.02 1.18 16 Total: -1.00 -65.72 345.10 2.72 -63.00 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.40 Total: 21.79 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 4.79 Total: -5.91 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -4.45 Total: -97.73 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -65.72 2.72 -63.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595790829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.174 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds