Wall clock time and date at job start Fri Apr 10 2020 17:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99790 * 2 1 4 4 C 1.52996 * 109.46964 * 125.00055 * 3 2 1 5 5 H 1.08998 * 109.52713 * 304.91712 * 4 3 2 6 6 C 1.53042 * 109.50066 * 64.99821 * 4 3 2 7 7 C 1.53039 * 109.54198 * 181.31673 * 6 4 3 8 8 C 1.53196 * 109.33748 * 298.62051 * 7 6 4 9 9 N 1.46992 * 108.73878 * 54.61838 * 8 7 6 10 10 C 1.34784 * 120.60795 * 126.38575 * 9 8 7 11 11 O 1.21283 * 119.99359 * 180.02562 * 10 9 8 12 12 C 1.50691 * 120.00259 * 0.02599 * 10 9 8 13 13 H 1.09003 * 109.47378 * 319.99517 * 12 10 9 14 14 N 1.46904 * 109.47024 * 199.99753 * 12 10 9 15 15 C 1.52995 * 109.47186 * 80.00036 * 12 10 9 16 16 C 1.53008 * 109.47387 * 184.99961 * 15 12 10 17 17 C 1.50695 * 109.47499 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99726 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00008 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00139 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 120.00034 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46919 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46932 * 119.99988 * 21 19 17 24 24 H 1.48492 * 109.47123 * 240.00107 * 21 19 17 25 25 C 1.46922 * 118.75940 * 306.41163 * 9 8 7 26 26 H 1.07999 * 120.00603 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.00139 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99874 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47420 * 5.00162 * 3 2 1 30 30 H 1.09002 * 109.46845 * 244.99664 * 3 2 1 31 31 H 1.09006 * 109.45643 * 61.29307 * 6 4 3 32 32 H 1.08997 * 109.46149 * 301.33933 * 6 4 3 33 33 H 1.09002 * 109.49756 * 58.58775 * 7 6 4 34 34 H 1.09000 * 109.49883 * 178.65518 * 7 6 4 35 35 H 1.09001 * 109.58261 * 174.43824 * 8 7 6 36 36 H 1.08996 * 109.58319 * 294.86146 * 8 7 6 37 37 H 1.00899 * 110.99829 * 299.99832 * 14 12 10 38 38 H 1.00900 * 111.00174 * 63.95402 * 14 12 10 39 39 H 1.09003 * 109.47425 * 304.99408 * 15 12 10 40 40 H 1.08997 * 109.47463 * 64.99925 * 15 12 10 41 41 H 1.09003 * 109.46387 * 300.00082 * 16 15 12 42 42 H 1.08997 * 109.46849 * 59.99588 * 16 15 12 43 43 H 0.97001 * 119.99767 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58306 * 293.82373 * 25 9 8 45 45 H 1.08994 * 109.70589 * 173.46329 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4889 1.1484 2.1067 6 6 4.1004 0.2508 0.9927 7 6 5.0535 0.2562 2.1901 8 6 5.7553 1.6154 2.2737 9 7 4.7346 2.6725 2.3092 10 6 4.7355 3.5946 3.2923 11 8 3.8877 4.4617 3.3110 12 6 5.7898 3.5481 4.3680 13 1 5.9717 2.5121 4.6540 14 7 5.3282 4.3055 5.5390 15 6 7.0855 4.1663 3.8392 16 6 8.1906 4.0073 4.8855 17 6 9.4671 4.6156 4.3644 18 1 9.4882 5.0698 3.3848 19 6 10.6079 4.5922 5.1382 20 7 10.5821 4.0395 6.3313 21 14 12.1901 5.3470 4.4926 22 1 11.9560 5.9015 3.1351 23 1 12.6266 6.4359 5.4031 24 1 13.2451 4.3041 4.4267 25 6 3.7133 2.7047 1.2535 26 1 -0.5401 0.9352 0.0004 27 1 -0.5401 -0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 4.6625 0.4500 0.0802 32 1 3.6185 -0.7239 0.9166 33 1 4.4884 0.0816 3.1057 34 1 5.7977 -0.5305 2.0663 35 1 6.3598 1.6593 3.1797 36 1 6.3924 1.7519 1.3999 37 1 5.1525 5.2699 5.2996 38 1 4.5092 3.8790 5.9458 39 1 7.3805 3.6608 2.9196 40 1 6.9267 5.2255 3.6368 41 1 7.8957 4.5127 5.8051 42 1 8.3495 2.9481 5.0879 43 1 11.3848 4.0228 6.8755 44 1 4.1840 2.9302 0.2965 45 1 2.9703 3.4681 1.4841 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595936388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:57 Heat of formation + Delta-G solvation = -42.517734 kcal Electronic energy + Delta-G solvation = -22383.842049 eV Core-core repulsion = 19207.475705 eV Total energy + Delta-G solvation = -3176.366344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.36450 -38.13114 -35.48884 -35.22050 -32.81429 -32.57305 -31.50910 -30.08708 -27.25846 -26.18104 -25.34141 -23.24233 -22.47395 -20.99263 -20.09999 -19.74170 -18.81786 -17.27497 -16.35074 -15.97018 -15.57237 -15.55942 -14.96186 -14.56260 -14.44547 -14.40216 -14.00114 -13.79581 -13.37948 -13.04477 -12.90933 -12.69524 -12.31095 -12.02704 -11.84613 -11.63750 -11.45196 -11.32681 -11.01936 -10.91055 -10.81711 -10.64415 -10.54086 -10.47654 -10.02635 -9.78619 -9.63968 -9.35769 -8.98448 -8.59282 -8.33905 -8.18665 -5.93902 -3.95911 1.97617 2.78874 3.07555 3.33736 3.41463 3.45319 4.36614 4.49989 4.52333 4.60082 4.73929 4.78195 4.92373 4.98712 5.07019 5.14359 5.20733 5.31337 5.36585 5.41819 5.49431 5.54734 5.59148 5.66273 5.67535 5.76291 5.83282 5.85447 5.91499 5.99028 6.17563 6.32156 6.43111 6.46301 6.54512 6.67934 7.08548 7.37538 7.54969 7.76220 7.81407 7.96242 8.13327 8.31006 8.48743 9.12303 9.67362 11.17026 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.003365 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.979059 B = 8317.737816 C = 8730.231662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.089 4.089 4 C -0.096 4.096 5 H 0.074 0.926 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.101 3.899 9 N -0.610 5.610 10 C 0.485 3.515 11 O -0.557 6.557 12 C 0.077 3.923 13 H 0.098 0.902 14 N -0.807 5.807 15 C -0.096 4.096 16 C 0.032 3.968 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.113 3.887 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.347 0.653 38 H 0.333 0.667 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.012 0.988 43 H 0.259 0.741 44 H 0.064 0.936 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.610 -10.097 -11.876 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.167 4.167 3 C -0.126 4.126 4 C -0.115 4.115 5 H 0.092 0.908 6 C -0.152 4.152 7 C -0.174 4.174 8 C -0.022 4.022 9 N -0.343 5.343 10 C 0.273 3.727 11 O -0.435 6.435 12 C -0.038 4.038 13 H 0.116 0.884 14 N -0.335 5.335 15 C -0.134 4.134 16 C -0.005 4.005 17 C -0.559 4.559 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.010 4.010 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.217 -9.818 -11.366 22.104 hybrid contribution 0.022 0.374 -0.957 1.028 sum -16.196 -9.444 -12.323 22.436 Atomic orbital electron populations 1.23864 0.96028 1.01786 1.01820 1.22960 0.95906 0.98550 0.99288 1.20751 0.97927 0.95561 0.98402 1.21480 0.95862 0.95363 0.98800 0.90778 1.21620 0.96557 0.98612 0.98435 1.21942 0.99250 0.97233 0.99011 1.21913 0.90094 0.86039 1.04115 1.48223 1.29943 1.29609 1.26575 1.22738 0.86645 0.80185 0.83121 1.90624 1.40132 1.36308 1.76438 1.21868 0.93969 1.00429 0.87563 0.88407 1.59024 1.39746 1.06837 1.27880 1.21676 0.92292 0.99337 1.00115 1.19017 0.90455 0.97098 0.93977 1.21309 0.95085 1.37424 1.02096 0.92955 1.24990 0.98848 0.95583 0.94921 1.69985 1.28473 1.44845 1.09889 0.86603 0.83790 0.79029 0.78962 1.19865 1.21061 1.21101 1.21584 0.91502 0.97220 0.90701 0.88649 0.88639 0.87302 0.91273 0.90707 0.91643 0.91609 0.91523 0.90374 0.88408 0.90982 0.83864 0.85528 0.92772 0.92878 0.94674 0.96921 0.93160 0.91778 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.43 14.32 29.01 0.42 -1.02 16 2 C -0.15 -1.11 9.02 -36.03 -0.33 -1.44 16 3 C -0.09 -0.69 5.14 -27.89 -0.14 -0.83 16 4 C -0.10 -0.88 2.33 -90.50 -0.21 -1.09 16 5 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.11 -0.94 5.00 -26.69 -0.13 -1.07 16 7 C -0.14 -1.25 6.08 -26.61 -0.16 -1.41 16 8 C 0.10 1.16 5.59 -3.67 -0.02 1.14 16 9 N -0.61 -8.19 2.97 -172.72 -0.51 -8.70 16 10 C 0.49 8.00 6.94 -10.99 -0.08 7.92 16 11 O -0.56 -10.60 15.67 5.55 0.09 -10.51 16 12 C 0.08 1.33 2.30 -68.87 -0.16 1.17 16 13 H 0.10 1.59 6.54 -51.93 -0.34 1.25 16 14 N -0.81 -13.97 8.44 -5.66 -0.05 -14.01 16 15 C -0.10 -1.95 4.55 -26.73 -0.12 -2.07 16 16 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 17 C -0.52 -14.67 9.11 -34.45 -0.31 -14.99 16 18 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.11 1.31 5.71 -3.71 -0.02 1.28 16 26 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 27 H 0.10 0.59 8.06 -52.48 -0.42 0.17 16 28 H 0.11 0.74 6.93 -52.49 -0.36 0.37 16 29 H 0.07 0.55 7.79 -51.93 -0.40 0.14 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.48 6.68 -51.93 -0.35 0.13 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 1.23 5.19 -51.93 -0.27 0.96 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.35 6.11 8.58 -39.29 -0.34 5.77 16 38 H 0.33 5.04 9.06 -39.29 -0.36 4.68 16 39 H 0.05 1.04 7.20 -51.93 -0.37 0.67 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.17 7.01 -51.93 -0.36 0.81 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -31.92 355.59 -8.64 -40.56 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.74 Total: 6.91 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.50 Total: -10.17 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.18 Total: -48.82 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.92 -8.64 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595936388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.960 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds