Wall clock time and date at job start Fri Apr 10 2020 17:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99790 * 2 1 4 4 C 1.52996 * 109.46964 * 125.00055 * 3 2 1 5 5 H 1.08998 * 109.52713 * 304.91712 * 4 3 2 6 6 C 1.53042 * 109.50066 * 64.99821 * 4 3 2 7 7 C 1.53039 * 109.54198 * 181.31673 * 6 4 3 8 8 C 1.53196 * 109.33748 * 298.62051 * 7 6 4 9 9 N 1.46992 * 108.73878 * 54.61838 * 8 7 6 10 10 C 1.34784 * 120.60795 * 126.38575 * 9 8 7 11 11 O 1.21283 * 119.99359 * 180.02562 * 10 9 8 12 12 C 1.50691 * 120.00259 * 0.02599 * 10 9 8 13 13 H 1.09003 * 109.47378 * 319.99517 * 12 10 9 14 14 N 1.46904 * 109.47024 * 199.99753 * 12 10 9 15 15 C 1.52995 * 109.47186 * 80.00036 * 12 10 9 16 16 C 1.53008 * 109.47387 * 184.99961 * 15 12 10 17 17 C 1.50695 * 109.47499 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99726 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00008 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00139 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 120.00034 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46919 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46932 * 119.99988 * 21 19 17 24 24 H 1.48492 * 109.47123 * 240.00107 * 21 19 17 25 25 C 1.46922 * 118.75940 * 306.41163 * 9 8 7 26 26 H 1.07999 * 120.00603 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.00139 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99874 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47420 * 5.00162 * 3 2 1 30 30 H 1.09002 * 109.46845 * 244.99664 * 3 2 1 31 31 H 1.09006 * 109.45643 * 61.29307 * 6 4 3 32 32 H 1.08997 * 109.46149 * 301.33933 * 6 4 3 33 33 H 1.09002 * 109.49756 * 58.58775 * 7 6 4 34 34 H 1.09000 * 109.49883 * 178.65518 * 7 6 4 35 35 H 1.09001 * 109.58261 * 174.43824 * 8 7 6 36 36 H 1.08996 * 109.58319 * 294.86146 * 8 7 6 37 37 H 1.00899 * 110.99829 * 299.99832 * 14 12 10 38 38 H 1.00900 * 111.00174 * 63.95402 * 14 12 10 39 39 H 1.09003 * 109.47425 * 304.99408 * 15 12 10 40 40 H 1.08997 * 109.47463 * 64.99925 * 15 12 10 41 41 H 1.09003 * 109.46387 * 300.00082 * 16 15 12 42 42 H 1.08997 * 109.46849 * 59.99588 * 16 15 12 43 43 H 0.97001 * 119.99767 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58306 * 293.82373 * 25 9 8 45 45 H 1.08994 * 109.70589 * 173.46329 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4889 1.1484 2.1067 6 6 4.1004 0.2508 0.9927 7 6 5.0535 0.2562 2.1901 8 6 5.7553 1.6154 2.2737 9 7 4.7346 2.6725 2.3092 10 6 4.7355 3.5946 3.2923 11 8 3.8877 4.4617 3.3110 12 6 5.7898 3.5481 4.3680 13 1 5.9717 2.5121 4.6540 14 7 5.3282 4.3055 5.5390 15 6 7.0855 4.1663 3.8392 16 6 8.1906 4.0073 4.8855 17 6 9.4671 4.6156 4.3644 18 1 9.4882 5.0698 3.3848 19 6 10.6079 4.5922 5.1382 20 7 10.5821 4.0395 6.3313 21 14 12.1901 5.3470 4.4926 22 1 11.9560 5.9015 3.1351 23 1 12.6266 6.4359 5.4031 24 1 13.2451 4.3041 4.4267 25 6 3.7133 2.7047 1.2535 26 1 -0.5401 0.9352 0.0004 27 1 -0.5401 -0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 4.6625 0.4500 0.0802 32 1 3.6185 -0.7239 0.9166 33 1 4.4884 0.0816 3.1057 34 1 5.7977 -0.5305 2.0663 35 1 6.3598 1.6593 3.1797 36 1 6.3924 1.7519 1.3999 37 1 5.1525 5.2699 5.2996 38 1 4.5092 3.8790 5.9458 39 1 7.3805 3.6608 2.9196 40 1 6.9267 5.2255 3.6368 41 1 7.8957 4.5127 5.8051 42 1 8.3495 2.9481 5.0879 43 1 11.3848 4.0228 6.8755 44 1 4.1840 2.9302 0.2965 45 1 2.9703 3.4681 1.4841 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595936388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:55 Heat of formation + Delta-G solvation = -62.674648 kcal Electronic energy + Delta-G solvation = -22384.716118 eV Core-core repulsion = 19207.475705 eV Total energy + Delta-G solvation = -3177.240413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.53126 -39.12778 -36.89160 -36.22901 -34.82801 -33.44214 -32.31526 -31.93626 -28.59995 -27.17035 -26.69671 -24.80736 -23.29328 -22.39565 -21.34931 -20.37536 -19.98683 -18.62258 -18.26035 -17.17450 -16.96617 -16.48147 -16.28488 -16.01329 -15.43425 -15.39769 -15.19490 -14.85912 -14.39926 -14.28009 -14.02042 -13.84666 -13.73800 -13.44204 -13.41215 -12.82235 -12.63939 -12.48926 -12.32130 -12.19359 -12.04814 -11.79221 -11.74271 -11.65427 -11.47843 -11.28155 -11.18382 -10.96796 -10.49046 -10.22312 -9.66953 -9.62015 -8.13388 -6.23510 1.40719 1.41771 1.42954 1.48057 1.55434 1.97771 2.45004 3.19751 3.42263 3.61034 3.75875 3.79493 3.86760 4.00067 4.08311 4.25424 4.29149 4.30039 4.40643 4.42567 4.56156 4.61325 4.75515 4.79372 4.81378 4.88223 4.94245 5.00782 5.05990 5.12358 5.16741 5.22919 5.30651 5.45506 5.51488 5.57724 5.78468 5.84072 5.91964 5.98513 6.06476 6.30028 6.31937 6.48198 6.94860 7.04381 7.44651 8.98050 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.003365 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.979059 B = 8317.737816 C = 8730.231662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.085 4.085 4 C -0.086 4.086 5 H 0.059 0.941 6 C -0.111 4.111 7 C -0.131 4.131 8 C 0.094 3.906 9 N -0.603 5.603 10 C 0.486 3.514 11 O -0.587 6.587 12 C 0.085 3.915 13 H 0.108 0.892 14 N -0.818 5.818 15 C -0.080 4.080 16 C 0.041 3.959 17 C -0.541 4.541 18 H 0.055 0.945 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.959 3.041 22 H -0.264 1.264 23 H -0.282 1.282 24 H -0.276 1.276 25 C 0.110 3.890 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.345 0.655 38 H 0.345 0.655 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.004 0.996 42 H -0.004 1.004 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 -11.256 -13.767 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.173 4.173 3 C -0.122 4.122 4 C -0.105 4.105 5 H 0.077 0.923 6 C -0.148 4.148 7 C -0.169 4.169 8 C -0.028 4.028 9 N -0.335 5.335 10 C 0.273 3.727 11 O -0.468 6.468 12 C -0.030 4.030 13 H 0.126 0.874 14 N -0.347 5.347 15 C -0.118 4.118 16 C 0.004 3.996 17 C -0.579 4.579 18 H 0.073 0.927 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.784 3.216 22 H -0.188 1.188 23 H -0.208 1.208 24 H -0.202 1.202 25 C -0.013 4.013 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.014 0.986 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.051 -11.013 -13.286 23.568 hybrid contribution -0.061 0.708 -0.366 0.800 sum -16.113 -10.305 -13.652 23.498 Atomic orbital electron populations 1.24015 0.96215 1.02291 1.01450 1.23034 0.96032 0.98645 0.99587 1.20708 0.97616 0.95791 0.98111 1.21371 0.96175 0.94145 0.98816 0.92294 1.21621 0.96023 0.98899 0.98261 1.21921 0.99674 0.95984 0.99312 1.22107 0.89954 0.86782 1.03969 1.48286 1.30376 1.28978 1.25838 1.22398 0.86168 0.80558 0.83577 1.90610 1.41234 1.37725 1.77225 1.21651 0.92900 1.00495 0.87978 0.87402 1.59009 1.40595 1.06879 1.28213 1.21389 0.92353 0.98986 0.99120 1.18811 0.91459 0.95248 0.94063 1.21730 0.96348 1.37520 1.02324 0.92706 1.25889 1.02592 0.95989 0.95096 1.70111 1.29647 1.46036 1.11194 0.85492 0.79283 0.78205 0.78605 1.18848 1.20777 1.20166 1.21743 0.90807 0.98338 0.90369 0.88818 0.87625 0.86230 0.91826 0.89628 0.90606 0.89965 0.92168 0.88525 0.89703 0.89869 0.84194 0.84164 0.91477 0.94174 0.97714 0.98575 0.92920 0.90383 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 14.32 67.78 0.97 -1.62 16 2 C -0.16 -1.98 9.02 25.64 0.23 -1.74 16 3 C -0.08 -1.15 5.14 29.85 0.15 -1.00 16 4 C -0.09 -1.42 2.33 -10.72 -0.02 -1.45 16 5 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.11 -1.49 5.00 30.62 0.15 -1.33 16 7 C -0.13 -2.08 6.08 30.67 0.19 -1.90 16 8 C 0.09 2.01 5.59 86.35 0.48 2.49 16 9 N -0.60 -15.64 2.97 -818.74 -2.43 -18.07 16 10 C 0.49 15.97 6.94 87.65 0.61 16.57 16 11 O -0.59 -22.58 15.67 -3.04 -0.05 -22.63 16 12 C 0.09 2.95 2.30 44.16 0.10 3.05 16 13 H 0.11 3.51 6.54 -2.39 -0.02 3.49 16 14 N -0.82 -28.90 8.44 -171.81 -1.45 -30.35 16 15 C -0.08 -3.29 4.55 30.60 0.14 -3.15 16 16 C 0.04 2.15 4.86 29.85 0.15 2.30 16 17 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 18 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -56.55 13.29 21.44 0.28 -56.26 16 21 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.11 2.41 5.71 86.36 0.49 2.91 16 26 H 0.09 1.20 7.84 -2.91 -0.02 1.18 16 27 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 28 H 0.12 1.26 6.93 -2.91 -0.02 1.24 16 29 H 0.06 0.94 7.79 -2.39 -0.02 0.92 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 0.90 6.68 -2.39 -0.02 0.88 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 2.06 5.19 -2.39 -0.01 2.04 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.34 12.47 8.58 -89.69 -0.77 11.70 16 38 H 0.35 10.57 9.06 -89.69 -0.81 9.76 16 39 H 0.07 2.55 7.20 -2.39 -0.02 2.53 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 42 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.82 7.01 -2.39 -0.02 1.80 16 Total: -1.00 -68.65 355.59 2.10 -66.55 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.61 Total: 29.14 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 4.33 Total: -14.75 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -3.60 Total: -104.68 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.65 2.10 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595936388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.871 kcal (2) G-P(sol) polarization free energy of solvation -68.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds