Wall clock time and date at job start Fri Apr 10 2020 17:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47390 * 2 1 4 4 H 1.09004 * 109.46559 * 305.59129 * 3 2 1 5 5 N 1.46900 * 109.47137 * 185.59346 * 3 2 1 6 6 C 1.46902 * 110.99972 * 85.71624 * 5 3 2 7 7 C 1.52997 * 109.47246 * 177.35594 * 6 5 3 8 8 H 1.09001 * 109.47211 * 305.00181 * 7 6 5 9 9 C 1.53005 * 109.46628 * 65.00032 * 7 6 5 10 10 C 1.52996 * 109.47322 * 184.99928 * 7 6 5 11 11 C 1.50703 * 109.47217 * 175.00096 * 10 7 6 12 12 H 1.08003 * 119.99714 * 0.02562 * 11 10 7 13 13 C 1.37874 * 120.00065 * 180.02562 * 11 10 7 14 14 N 1.31513 * 120.00074 * 359.72285 * 13 11 10 15 15 Si 1.86802 * 119.99904 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47152 * 179.72342 * 15 13 11 17 17 H 1.48493 * 109.47091 * 299.72426 * 15 13 11 18 18 H 1.48506 * 109.47192 * 59.72737 * 15 13 11 19 19 C 1.50697 * 109.47060 * 65.59054 * 3 2 1 20 20 C 1.41381 * 128.00623 * 74.68160 * 19 3 2 21 21 C 1.50701 * 126.80108 * 0.03489 * 20 19 3 22 22 N 1.30183 * 106.39392 * 179.89239 * 20 19 3 23 23 O 1.20918 * 111.60112 * 0.39345 * 22 20 19 24 24 C 1.34039 * 111.57296 * 359.73918 * 23 22 20 25 25 C 1.50702 * 126.77881 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.47040 * 53.87995 * 1 2 3 27 27 H 1.08999 * 109.47674 * 173.87764 * 1 2 3 28 28 H 1.09001 * 109.47066 * 293.88227 * 1 2 3 29 29 H 1.08997 * 109.47043 * 239.99622 * 2 1 3 30 30 H 1.09001 * 109.46914 * 120.00038 * 2 1 3 31 31 H 1.00898 * 110.99948 * 209.66753 * 5 3 2 32 32 H 1.09002 * 109.47080 * 57.35958 * 6 5 3 33 33 H 1.08997 * 109.47075 * 297.35961 * 6 5 3 34 34 H 1.09001 * 109.47203 * 60.00143 * 9 7 6 35 35 H 1.09004 * 109.46630 * 180.02562 * 9 7 6 36 36 H 1.08997 * 109.47095 * 299.99884 * 9 7 6 37 37 H 1.09000 * 109.47342 * 55.00491 * 10 7 6 38 38 H 1.08994 * 109.46995 * 295.00510 * 10 7 6 39 39 H 0.97003 * 119.99832 * 0.27874 * 14 13 11 40 40 H 1.09001 * 109.47398 * 89.99993 * 21 20 19 41 41 H 1.08996 * 109.46668 * 209.99976 * 21 20 19 42 42 H 1.09001 * 109.47006 * 329.99671 * 21 20 19 43 43 H 1.08994 * 109.47279 * 270.00690 * 25 24 23 44 44 H 1.09005 * 109.46473 * 30.00790 * 25 24 23 45 45 H 1.09001 * 109.46813 * 150.00265 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5972 1.9843 -0.8357 5 7 3.5028 1.4446 -0.1350 6 6 3.9012 1.3874 -1.5478 7 6 5.4261 1.4578 -1.6510 8 1 5.7845 2.3480 -1.1340 9 6 6.0388 0.2125 -1.0069 10 6 5.8351 1.5239 -3.1238 11 6 7.3265 1.7167 -3.2228 12 1 7.9229 1.7848 -2.3250 13 6 7.9294 1.8062 -4.4595 14 7 7.2038 1.7178 -5.5528 15 14 9.7781 2.0444 -4.5822 16 1 10.1759 2.1026 -6.0117 17 1 10.1594 3.3125 -3.9102 18 1 10.4687 0.9073 -3.9222 19 6 1.6540 2.1118 1.2938 20 6 2.2226 1.9242 2.5745 21 6 3.3578 0.9996 2.9316 22 7 1.5733 2.7106 3.3836 23 8 0.7099 3.3292 2.8057 24 6 0.6779 3.0281 1.5000 25 6 -0.2594 3.5962 0.4657 26 1 -0.3633 0.6058 -0.8301 27 1 -0.3634 -1.0218 -0.1096 28 1 -0.3633 0.4161 0.9397 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9070 2.2480 0.3224 32 1 3.4616 2.2287 -2.0836 33 1 3.5500 0.4536 -1.9868 34 1 5.6803 -0.6777 -1.5239 35 1 7.1252 0.2629 -1.0800 36 1 5.7474 0.1654 0.0423 37 1 5.3280 2.3605 -3.6045 38 1 5.5550 0.5952 -3.6207 39 1 6.2439 1.5937 -5.4890 40 1 4.3045 1.5302 2.8293 41 1 3.2405 0.6610 3.9610 42 1 3.3495 0.1389 2.2628 43 1 -1.1544 2.9769 0.4072 44 1 -0.5380 4.6119 0.7468 45 1 0.2365 3.6109 -0.5049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602577092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:12 Heat of formation + Delta-G solvation = 22.103746 kcal Electronic energy + Delta-G solvation = -22580.308744 eV Core-core repulsion = 19406.744598 eV Total energy + Delta-G solvation = -3173.564146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -45.01511 -38.15856 -35.80251 -34.11408 -33.37354 -32.60472 -31.32437 -28.72335 -28.20232 -26.60474 -26.18408 -24.31239 -23.06126 -22.35123 -20.36328 -20.29170 -19.34738 -17.77201 -16.94551 -16.71036 -15.45658 -15.35562 -14.73687 -14.26914 -14.16772 -13.74653 -13.63302 -13.50117 -13.29936 -13.20909 -13.10305 -12.77076 -12.59371 -12.34460 -11.83670 -11.82106 -11.75356 -11.46838 -11.31169 -11.15656 -11.00035 -10.76723 -10.60050 -10.26160 -10.09327 -9.85334 -9.83929 -9.48691 -9.24744 -8.47414 -8.30381 -8.26917 -6.32769 -4.00918 1.33276 2.12713 2.98075 3.45119 3.46859 3.65395 4.00770 4.27534 4.34525 4.56904 4.71275 4.85574 5.00386 5.02605 5.12106 5.16974 5.28513 5.36563 5.43623 5.51968 5.55852 5.56218 5.61272 5.63325 5.70141 5.81332 5.87155 5.88772 6.01503 6.07810 6.10196 6.29725 6.30912 6.41896 6.56180 6.87014 7.03777 7.10259 7.22684 7.39616 7.50861 7.59302 8.20705 8.26337 8.49994 8.92275 9.70452 11.07656 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024483 B = 0.003502 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.387202 B = 7994.389240 C = 8214.791342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C 0.166 3.834 4 H 0.053 0.947 5 N -0.677 5.677 6 C 0.063 3.937 7 C -0.075 4.075 8 H 0.054 0.946 9 C -0.121 4.121 10 C 0.015 3.985 11 C -0.594 4.594 12 H 0.049 0.951 13 C 0.013 3.987 14 N -0.916 5.916 15 Si 1.066 2.934 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.288 1.288 19 C -0.196 4.196 20 C 0.042 3.958 21 C -0.073 4.073 22 N -0.374 5.374 23 O 0.092 5.908 24 C -0.032 4.032 25 C -0.074 4.074 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.340 0.660 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.002 0.998 38 H 0.007 0.993 39 H 0.267 0.733 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.560 -0.281 13.525 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C 0.056 3.944 4 H 0.071 0.929 5 N -0.308 5.308 6 C -0.065 4.065 7 C -0.094 4.094 8 H 0.072 0.928 9 C -0.179 4.179 10 C -0.023 4.023 11 C -0.632 4.632 12 H 0.068 0.932 13 C -0.190 4.190 14 N -0.552 5.552 15 Si 0.895 3.105 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.215 1.215 19 C -0.200 4.200 20 C -0.117 4.117 21 C -0.130 4.130 22 N -0.081 5.081 23 O 0.029 5.971 24 C -0.096 4.096 25 C -0.132 4.132 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.158 0.842 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.021 0.979 38 H 0.025 0.975 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.165 -0.529 13.845 19.814 hybrid contribution -1.398 0.530 0.078 1.497 sum -15.563 0.001 13.924 20.882 Atomic orbital electron populations 1.21777 0.96088 1.01595 1.01379 1.21501 0.94771 0.95330 1.03013 1.19814 0.89368 0.95060 0.90144 0.92924 1.60626 1.06406 1.47970 1.15821 1.22234 0.97702 1.00036 0.86526 1.21064 0.90953 0.98059 0.99354 0.92784 1.21575 1.00828 0.96876 0.98597 1.19239 0.97105 0.95712 0.90216 1.22028 0.92520 1.54020 0.94637 0.93241 1.25810 1.06680 0.94202 0.92332 1.70786 1.08230 1.46443 1.29780 0.83577 0.74536 0.76441 0.75946 1.20853 1.21546 1.21460 1.21052 0.99724 1.02133 0.97136 1.23458 0.99944 0.98761 0.89585 1.20206 0.93339 0.97445 1.02051 1.73840 1.03066 1.09776 1.21423 1.84790 1.42511 1.51381 1.18467 1.24219 1.00274 0.98857 0.86273 1.20354 0.96940 1.01660 0.94208 0.92831 0.92607 0.93186 0.91104 0.91330 0.84179 0.95834 0.91354 0.94212 0.92694 0.93764 0.97949 0.97471 0.92215 0.90007 0.91429 0.88961 0.89448 0.89877 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.63 37.16 0.36 -1.00 16 2 C -0.11 -1.16 5.64 -26.73 -0.15 -1.32 16 3 C 0.17 1.91 2.44 -68.87 -0.17 1.75 16 4 H 0.05 0.60 6.75 -51.93 -0.35 0.25 16 5 N -0.68 -9.05 5.06 -107.95 -0.55 -9.60 16 6 C 0.06 1.02 4.90 -3.82 -0.02 1.00 16 7 C -0.08 -1.49 2.45 -90.62 -0.22 -1.71 16 8 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 9 C -0.12 -2.29 8.89 37.16 0.33 -1.96 16 10 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 11 C -0.59 -16.67 8.41 -34.44 -0.29 -16.96 16 12 H 0.05 1.37 7.06 -52.48 -0.37 1.00 16 13 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 14 N -0.92 -28.07 13.65 55.43 0.76 -27.31 16 15 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.20 -2.27 4.02 -104.42 -0.42 -2.69 16 20 C 0.04 0.52 7.22 -82.10 -0.59 -0.07 16 21 C -0.07 -0.79 9.79 36.01 0.35 -0.44 16 22 N -0.37 -5.15 12.07 33.42 0.40 -4.74 16 23 O 0.09 1.15 11.20 17.18 0.19 1.34 16 24 C -0.03 -0.34 7.41 -35.30 -0.26 -0.60 16 25 C -0.07 -0.51 10.26 36.01 0.37 -0.14 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.47 7.53 -51.93 -0.39 0.08 16 29 H 0.07 0.82 7.43 -51.93 -0.39 0.43 16 30 H 0.07 0.77 7.03 -51.93 -0.37 0.40 16 31 H 0.34 4.68 8.25 -39.29 -0.32 4.35 16 32 H 0.02 0.39 7.99 -51.93 -0.41 -0.03 16 33 H 0.07 1.11 7.46 -51.93 -0.39 0.73 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 36 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 37 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 38 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 39 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.99 6.98 -51.93 -0.36 0.63 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.60 7.28 -51.93 -0.38 0.23 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -30.97 360.31 -7.56 -38.53 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.80 Total: -0.33 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -0.92 Total: -23.60 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.61 Total: -41.65 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.19 Total: 1.34 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.97 -7.56 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.635 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds