Wall clock time and date at job start Fri Apr 10 2020 17:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47173 * 119.99732 * 2 1 3 5 5 H 1.09004 * 115.56342 * 325.70811 * 4 2 1 6 6 C 1.53007 * 117.49765 * 111.39248 * 4 2 1 7 7 C 1.53004 * 117.50065 * 180.02562 * 4 2 1 8 8 H 1.09004 * 117.49330 * 0.02562 * 7 4 2 9 9 C 1.50699 * 117.49893 * 145.01996 * 7 4 2 10 10 O 1.21276 * 120.00024 * 0.02562 * 9 7 4 11 11 N 1.34780 * 119.99673 * 180.02562 * 9 7 4 12 12 C 1.46498 * 119.99924 * 179.97438 * 11 9 7 13 13 C 1.53042 * 109.46190 * 275.03275 * 12 11 9 14 14 C 1.53192 * 109.30982 * 178.60154 * 13 12 11 15 15 N 1.46917 * 108.76655 * 54.65517 * 14 13 12 16 16 C 1.36940 * 120.63357 * 126.36081 * 15 14 13 17 17 H 1.07993 * 120.00139 * 207.69836 * 16 15 14 18 18 C 1.38813 * 119.99865 * 27.69613 * 16 15 14 19 19 N 1.31624 * 119.99807 * 17.35085 * 18 16 15 20 20 Si 1.86800 * 120.00220 * 197.35326 * 18 16 15 21 21 H 1.48493 * 109.46993 * 59.99700 * 20 18 16 22 22 H 1.48501 * 109.46914 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46914 * 300.00167 * 20 18 16 24 24 C 1.46924 * 118.74102 * 306.37983 * 15 14 13 25 25 C 1.53033 * 109.45935 * 154.97385 * 12 11 9 26 26 H 1.09003 * 109.47348 * 299.99583 * 1 2 3 27 27 H 1.08995 * 109.47308 * 60.00608 * 1 2 3 28 28 H 1.09006 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47051 * 239.99777 * 2 1 3 30 30 H 1.08997 * 109.47400 * 59.99991 * 3 2 1 31 31 H 1.08997 * 109.47138 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46768 * 300.00089 * 3 2 1 33 33 H 1.09007 * 117.49443 * 214.97898 * 6 4 2 34 34 H 1.08994 * 117.50105 * 359.97438 * 6 4 2 35 35 H 0.97003 * 119.99836 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.46032 * 35.00466 * 12 11 9 37 37 H 1.09003 * 109.49286 * 298.56592 * 13 12 11 38 38 H 1.08995 * 109.49794 * 58.65821 * 13 12 11 39 39 H 1.08999 * 109.59704 * 294.86187 * 14 13 12 40 40 H 1.09006 * 109.58004 * 174.43295 * 14 13 12 41 41 H 0.96997 * 119.99923 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.58646 * 293.82588 * 24 15 14 43 43 H 1.08997 * 109.58991 * 173.39676 * 24 15 14 44 44 H 1.08997 * 109.50212 * 301.33896 * 25 12 11 45 45 H 1.09007 * 109.49624 * 61.40441 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.4309 -0.5985 2.1448 6 6 2.7423 -2.0661 1.0514 7 6 3.5551 -0.8275 1.4346 8 1 4.1884 -0.3832 0.6667 9 6 4.0908 -0.7546 2.8413 10 8 3.3282 -0.6171 3.7742 11 7 5.4174 -0.8423 3.0625 12 6 5.9383 -0.7710 4.4299 13 6 6.1158 0.6950 4.8320 14 6 6.6274 0.7662 6.2743 15 7 7.8500 -0.0412 6.3826 16 6 9.0015 0.5005 6.8884 17 1 9.9613 0.1152 6.5778 18 6 8.9349 1.5450 7.8002 19 7 7.8097 1.7920 8.4369 20 14 10.4421 2.6001 8.1237 21 1 10.8693 3.2533 6.8605 22 1 10.1118 3.6391 9.1320 23 1 11.5434 1.7459 8.6363 24 6 7.8139 -1.4409 5.9375 25 6 7.2887 -1.4876 4.4991 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 2.5951 -2.8281 1.8168 34 1 2.8405 -2.4373 0.0313 35 1 6.0273 -0.9520 2.3162 36 1 5.2366 -1.2520 5.1114 37 1 6.8363 1.1701 4.1663 38 1 5.1582 1.2105 4.7599 39 1 5.8687 0.3733 6.9511 40 1 6.8493 1.8018 6.5324 41 1 7.7632 2.5216 9.0744 42 1 7.1520 -2.0140 6.5869 43 1 8.8187 -1.8618 5.9734 44 1 7.1661 -2.5256 4.1901 45 1 7.9980 -0.9920 3.8361 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613877573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:01 Heat of formation + Delta-G solvation = -13.849478 kcal Electronic energy + Delta-G solvation = -22286.116452 eV Core-core repulsion = 19110.993257 eV Total energy + Delta-G solvation = -3175.123195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06472 -38.13313 -36.91234 -34.36067 -33.48108 -32.07142 -30.05317 -29.47956 -27.39394 -25.58112 -24.02516 -23.04965 -22.22049 -21.64748 -20.16462 -19.85270 -19.13529 -17.26046 -16.67028 -15.91844 -15.24868 -14.92013 -14.67954 -14.37464 -14.07404 -13.71528 -13.49270 -13.33716 -13.02035 -12.89181 -12.54187 -12.49642 -12.37810 -12.36918 -11.54384 -11.46891 -11.35514 -11.11517 -10.92199 -10.88465 -10.70863 -10.43702 -10.36500 -10.26089 -10.18497 -10.04979 -9.77026 -9.73945 -9.40045 -8.67125 -8.40074 -6.67877 -5.77281 -3.20013 2.65695 3.33016 3.39623 3.45173 3.46158 3.73365 4.41568 4.50484 4.58571 4.66245 4.84209 5.05066 5.08556 5.13781 5.32658 5.37225 5.41907 5.44780 5.47349 5.53914 5.64843 5.65347 5.67158 5.78390 5.85138 5.87408 5.95349 6.08388 6.09903 6.23683 6.25757 6.39020 6.46196 6.62993 6.66480 6.79140 6.93573 6.97378 7.39252 7.68772 7.78873 7.80331 8.45822 8.48572 9.22057 9.85545 10.42242 11.31273 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031694 B = 0.003277 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.231240 B = 8542.486239 C = 8940.773860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.114 4.114 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.187 4.187 8 H 0.120 0.880 9 C 0.538 3.462 10 O -0.541 6.541 11 N -0.721 5.721 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.255 4.255 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.149 3.851 25 C -0.138 4.138 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.395 0.605 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.089 0.911 41 H 0.255 0.745 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.973 -5.609 -18.541 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.205 4.205 4 C -0.132 4.132 5 H 0.135 0.865 6 C -0.188 4.188 7 C -0.208 4.208 8 H 0.138 0.862 9 C 0.324 3.676 10 O -0.419 6.419 11 N -0.370 5.370 12 C 0.047 3.953 13 C -0.186 4.186 14 C 0.047 3.953 15 N -0.315 5.315 16 C -0.385 4.385 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.021 3.979 25 C -0.178 4.178 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.228 0.772 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.532 -5.378 -17.692 21.281 hybrid contribution 1.174 0.571 -0.179 1.317 sum -9.359 -4.807 -17.872 20.739 Atomic orbital electron populations 1.21804 0.94647 1.01848 1.01883 1.20735 0.95967 0.96050 0.95693 1.21830 1.01190 0.95597 1.01844 1.22464 0.92193 0.98315 1.00248 0.86452 1.23067 1.02058 0.90982 1.02672 1.22309 0.96206 1.05984 0.96341 0.86213 1.19609 0.82490 0.76060 0.89422 1.90697 1.57282 1.49261 1.44628 1.46258 1.06795 1.73829 1.10166 1.21037 0.95105 0.97626 0.81501 1.22558 1.00030 0.94488 1.01558 1.20760 0.86983 0.98487 0.89032 1.44098 1.09415 1.05363 1.72665 1.19135 0.85404 1.15210 1.18752 0.91676 1.25056 0.96982 1.01427 0.96171 1.70031 1.25887 1.31447 1.27173 0.86365 0.82550 0.80295 0.77520 1.21054 1.21625 1.20883 1.20839 0.98511 0.87833 0.90684 1.22333 0.95641 0.98594 1.01273 0.92386 0.92654 0.92549 0.91182 0.92293 0.92605 0.92743 0.88356 0.88042 0.77198 0.90162 0.92721 0.92911 0.96176 0.89239 0.93518 0.96223 0.92342 0.92674 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 2 C -0.07 -0.54 3.07 -90.62 -0.28 -0.82 16 3 C -0.15 -1.26 9.03 37.16 0.34 -0.92 16 4 C -0.11 -1.17 4.66 -90.62 -0.42 -1.59 16 5 H 0.12 1.47 7.64 -51.93 -0.40 1.07 16 6 C -0.15 -1.39 9.88 -26.71 -0.26 -1.65 16 7 C -0.19 -2.04 5.39 -91.76 -0.49 -2.54 16 8 H 0.12 1.07 7.60 -51.93 -0.39 0.68 16 9 C 0.54 8.17 7.58 -10.98 -0.08 8.08 16 10 O -0.54 -10.53 15.92 5.56 0.09 -10.44 16 11 N -0.72 -10.40 5.08 -53.77 -0.27 -10.67 16 12 C 0.15 2.69 2.42 -67.89 -0.16 2.52 16 13 C -0.15 -2.99 5.65 -26.61 -0.15 -3.14 16 14 C 0.17 4.30 5.31 -3.72 -0.02 4.28 16 15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 16 C -0.26 -7.03 9.59 -15.06 -0.14 -7.18 16 17 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 20 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 25 C -0.14 -2.34 5.55 -26.61 -0.15 -2.48 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.50 7.90 -51.93 -0.41 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.48 7.29 -51.93 -0.38 0.11 16 32 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.71 8.05 -51.93 -0.42 0.30 16 35 H 0.39 4.50 8.60 -40.82 -0.35 4.15 16 36 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 2.47 6.04 -51.93 -0.31 2.15 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -31.58 357.34 -9.42 -40.99 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.09 Total: 2.55 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.60 Total: -3.11 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.17 Total: -52.11 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.58 -9.42 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613877573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.142 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds