Wall clock time and date at job start Fri Apr 10 2020 17:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47173 * 119.99732 * 2 1 3 5 5 H 1.09004 * 115.56342 * 325.70811 * 4 2 1 6 6 C 1.53007 * 117.49765 * 111.39248 * 4 2 1 7 7 C 1.53004 * 117.50065 * 180.02562 * 4 2 1 8 8 H 1.09004 * 117.49330 * 0.02562 * 7 4 2 9 9 C 1.50699 * 117.49893 * 145.01996 * 7 4 2 10 10 O 1.21276 * 120.00024 * 0.02562 * 9 7 4 11 11 N 1.34780 * 119.99673 * 180.02562 * 9 7 4 12 12 C 1.46498 * 119.99924 * 179.97438 * 11 9 7 13 13 C 1.53042 * 109.46190 * 275.03275 * 12 11 9 14 14 C 1.53192 * 109.30982 * 178.60154 * 13 12 11 15 15 N 1.46917 * 108.76655 * 54.65517 * 14 13 12 16 16 C 1.36940 * 120.63357 * 126.36081 * 15 14 13 17 17 H 1.07993 * 120.00139 * 207.69836 * 16 15 14 18 18 C 1.38813 * 119.99865 * 27.69613 * 16 15 14 19 19 N 1.31624 * 119.99807 * 17.35085 * 18 16 15 20 20 Si 1.86800 * 120.00220 * 197.35326 * 18 16 15 21 21 H 1.48493 * 109.46993 * 59.99700 * 20 18 16 22 22 H 1.48501 * 109.46914 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46914 * 300.00167 * 20 18 16 24 24 C 1.46924 * 118.74102 * 306.37983 * 15 14 13 25 25 C 1.53033 * 109.45935 * 154.97385 * 12 11 9 26 26 H 1.09003 * 109.47348 * 299.99583 * 1 2 3 27 27 H 1.08995 * 109.47308 * 60.00608 * 1 2 3 28 28 H 1.09006 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47051 * 239.99777 * 2 1 3 30 30 H 1.08997 * 109.47400 * 59.99991 * 3 2 1 31 31 H 1.08997 * 109.47138 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46768 * 300.00089 * 3 2 1 33 33 H 1.09007 * 117.49443 * 214.97898 * 6 4 2 34 34 H 1.08994 * 117.50105 * 359.97438 * 6 4 2 35 35 H 0.97003 * 119.99836 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.46032 * 35.00466 * 12 11 9 37 37 H 1.09003 * 109.49286 * 298.56592 * 13 12 11 38 38 H 1.08995 * 109.49794 * 58.65821 * 13 12 11 39 39 H 1.08999 * 109.59704 * 294.86187 * 14 13 12 40 40 H 1.09006 * 109.58004 * 174.43295 * 14 13 12 41 41 H 0.96997 * 119.99923 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.58646 * 293.82588 * 24 15 14 43 43 H 1.08997 * 109.58991 * 173.39676 * 24 15 14 44 44 H 1.08997 * 109.50212 * 301.33896 * 25 12 11 45 45 H 1.09007 * 109.49624 * 61.40441 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.4309 -0.5985 2.1448 6 6 2.7423 -2.0661 1.0514 7 6 3.5551 -0.8275 1.4346 8 1 4.1884 -0.3832 0.6667 9 6 4.0908 -0.7546 2.8413 10 8 3.3282 -0.6171 3.7742 11 7 5.4174 -0.8423 3.0625 12 6 5.9383 -0.7710 4.4299 13 6 6.1158 0.6950 4.8320 14 6 6.6274 0.7662 6.2743 15 7 7.8500 -0.0412 6.3826 16 6 9.0015 0.5005 6.8884 17 1 9.9613 0.1152 6.5778 18 6 8.9349 1.5450 7.8002 19 7 7.8097 1.7920 8.4369 20 14 10.4421 2.6001 8.1237 21 1 10.8693 3.2533 6.8605 22 1 10.1118 3.6391 9.1320 23 1 11.5434 1.7459 8.6363 24 6 7.8139 -1.4409 5.9375 25 6 7.2887 -1.4876 4.4991 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 2.5951 -2.8281 1.8168 34 1 2.8405 -2.4373 0.0313 35 1 6.0273 -0.9520 2.3162 36 1 5.2366 -1.2520 5.1114 37 1 6.8363 1.1701 4.1663 38 1 5.1582 1.2105 4.7599 39 1 5.8687 0.3733 6.9511 40 1 6.8493 1.8018 6.5324 41 1 7.7632 2.5216 9.0744 42 1 7.1520 -2.0140 6.5869 43 1 8.8187 -1.8618 5.9734 44 1 7.1661 -2.5256 4.1901 45 1 7.9980 -0.9920 3.8361 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613877573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:00 Heat of formation + Delta-G solvation = -32.944255 kcal Electronic energy + Delta-G solvation = -22286.944463 eV Core-core repulsion = 19110.993257 eV Total energy + Delta-G solvation = -3175.951207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.24374 -39.42661 -38.21238 -35.99755 -34.26294 -33.83949 -31.80549 -31.24552 -28.02211 -27.27158 -25.41664 -23.94532 -23.79284 -23.22493 -21.38882 -20.89608 -20.49019 -18.86233 -18.13491 -17.28877 -16.74622 -16.18286 -15.90467 -15.53567 -15.44051 -15.37590 -14.94129 -14.72192 -14.33808 -14.10277 -13.96999 -13.58755 -13.40143 -13.21842 -13.03937 -13.00464 -12.67870 -12.57043 -12.18022 -12.13587 -12.10351 -12.03576 -11.88367 -11.56474 -11.55205 -11.44677 -11.16986 -11.00430 -10.73465 -10.58775 -10.00591 -8.74101 -7.88839 -5.35189 1.46889 1.49733 1.52484 1.56701 2.16555 2.50835 2.87625 3.26792 3.58958 3.66610 3.77568 3.83412 3.88980 4.04710 4.11765 4.24000 4.30686 4.41192 4.44383 4.46582 4.63651 4.68725 4.77339 4.83282 4.84732 4.89170 4.96521 5.02580 5.04613 5.05432 5.08670 5.11294 5.23924 5.28706 5.29403 5.43267 5.44512 5.53895 5.57325 5.61962 5.66685 6.36570 6.63033 7.11293 7.31905 7.82311 8.35270 9.18258 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031694 B = 0.003277 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.231240 B = 8542.486239 C = 8940.773860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.149 4.149 4 C -0.121 4.121 5 H 0.085 0.915 6 C -0.130 4.130 7 C -0.189 4.189 8 H 0.149 0.851 9 C 0.532 3.468 10 O -0.593 6.593 11 N -0.707 5.707 12 C 0.161 3.839 13 C -0.130 4.130 14 C 0.183 3.817 15 N -0.609 5.609 16 C -0.264 4.264 17 H 0.075 0.925 18 C -0.055 4.055 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.272 1.272 24 C 0.141 3.859 25 C -0.121 4.121 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.415 0.585 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.042 0.958 39 H -0.013 1.013 40 H 0.056 0.944 41 H 0.249 0.751 42 H 0.010 0.990 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 -6.733 -22.036 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.206 4.206 4 C -0.140 4.140 5 H 0.104 0.896 6 C -0.167 4.167 7 C -0.210 4.210 8 H 0.167 0.833 9 C 0.321 3.679 10 O -0.473 6.473 11 N -0.357 5.357 12 C 0.056 3.944 13 C -0.170 4.170 14 C 0.056 3.944 15 N -0.333 5.333 16 C -0.394 4.394 17 H 0.093 0.907 18 C -0.250 4.250 19 N -0.585 5.585 20 Si 0.799 3.201 21 H -0.202 1.202 22 H -0.224 1.224 23 H -0.198 1.198 24 C 0.015 3.985 25 C -0.160 4.160 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.252 0.748 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.005 0.995 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.392 -6.540 -21.249 24.135 hybrid contribution 0.771 0.869 0.950 1.501 sum -8.621 -5.670 -20.298 22.771 Atomic orbital electron populations 1.21809 0.94351 1.02189 1.01862 1.20741 0.96201 0.95599 0.95231 1.21851 1.01205 0.95948 1.01600 1.22465 0.91402 0.99933 1.00200 0.89626 1.23186 0.99603 0.89833 1.04085 1.22298 0.96775 1.08041 0.93901 0.83298 1.20416 0.82123 0.74558 0.90828 1.90686 1.58484 1.51421 1.46744 1.45983 1.07159 1.73346 1.09239 1.20645 0.95419 0.95290 0.83035 1.22299 0.99231 0.96801 0.98661 1.20457 0.86444 0.96361 0.91096 1.44348 1.08746 1.07307 1.72900 1.19555 0.86482 1.15194 1.18148 0.90745 1.25899 0.99811 1.02922 0.96401 1.70213 1.28187 1.31970 1.28165 0.85284 0.79227 0.78325 0.77276 1.20171 1.22372 1.19772 1.21052 0.99283 0.85278 0.92898 1.22129 0.94573 1.00790 0.98500 0.93839 0.91267 0.92054 0.88888 0.94325 0.92563 0.91231 0.89533 0.84571 0.74779 0.92898 0.91946 0.93971 0.99501 0.92601 0.94159 0.97188 0.91248 0.89035 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.18 71.98 0.66 -1.26 16 2 C -0.06 -0.83 3.07 -10.79 -0.03 -0.86 16 3 C -0.15 -2.27 9.03 71.98 0.65 -1.62 16 4 C -0.12 -2.32 4.66 -10.79 -0.05 -2.37 16 5 H 0.09 2.22 7.64 -2.39 -0.02 2.20 16 6 C -0.13 -2.01 9.88 30.61 0.30 -1.71 16 7 C -0.19 -3.67 5.39 -11.53 -0.06 -3.73 16 8 H 0.15 2.04 7.60 -2.39 -0.02 2.02 16 9 C 0.53 15.68 7.58 87.66 0.66 16.34 16 10 O -0.59 -23.73 15.92 -3.02 -0.05 -23.77 16 11 N -0.71 -18.99 5.08 -442.42 -2.25 -21.23 16 12 C 0.16 5.63 2.42 45.02 0.11 5.74 16 13 C -0.13 -5.39 5.65 30.67 0.17 -5.22 16 14 C 0.18 9.49 5.31 86.36 0.46 9.94 16 15 N -0.61 -31.20 2.99 -699.11 -2.09 -33.30 16 16 C -0.26 -14.57 9.59 84.03 0.81 -13.77 16 17 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 18 C -0.06 -3.14 4.91 84.86 0.42 -2.72 16 19 N -0.94 -57.50 11.19 21.65 0.24 -57.26 16 20 Si 0.97 45.23 29.59 68.60 2.03 47.26 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 C 0.14 5.75 6.52 86.36 0.56 6.31 16 25 C -0.12 -3.76 5.55 30.67 0.17 -3.59 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.09 0.93 7.90 -2.39 -0.02 0.91 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.84 7.29 -2.39 -0.02 0.83 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.14 1.22 8.05 -2.39 -0.02 1.20 16 35 H 0.42 7.93 8.60 -92.71 -0.80 7.13 16 36 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 37 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H 0.06 3.25 6.04 -2.38 -0.01 3.23 16 41 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 44 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -72.25 357.34 2.87 -69.39 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.15 Total: 17.43 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 4.83 Total: 1.49 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -4.10 Total: -111.79 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.25 2.87 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613877573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.446 kcal (2) G-P(sol) polarization free energy of solvation -72.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds