Wall clock time and date at job start Fri Apr 10 2020 17:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47466 * 2 1 4 4 C 1.53005 * 109.47025 * 120.00287 * 2 1 3 5 5 H 1.09003 * 115.55793 * 273.56957 * 4 2 1 6 6 C 1.52998 * 117.49807 * 127.88864 * 4 2 1 7 7 C 1.52996 * 59.99999 * 252.50493 * 6 4 2 8 8 H 1.09004 * 117.50379 * 252.49296 * 7 6 4 9 9 C 1.50700 * 117.49809 * 107.48757 * 7 6 4 10 10 O 1.21279 * 120.00063 * 335.29759 * 9 7 6 11 11 N 1.34779 * 119.99860 * 155.30010 * 9 7 6 12 12 C 1.46503 * 119.99902 * 180.02562 * 11 9 7 13 13 C 1.53036 * 109.46135 * 154.99993 * 12 11 9 14 14 C 1.53189 * 109.31349 * 181.38546 * 13 12 11 15 15 N 1.46932 * 108.77386 * 305.36208 * 14 13 12 16 16 C 1.36934 * 120.63349 * 233.58195 * 15 14 13 17 17 H 1.08000 * 119.99710 * 27.53002 * 16 15 14 18 18 C 1.38805 * 120.00215 * 207.52596 * 16 15 14 19 19 N 1.31625 * 120.00219 * 205.31049 * 18 16 15 20 20 Si 1.86801 * 120.00100 * 25.31336 * 18 16 15 21 21 H 1.48496 * 109.46991 * 275.40892 * 20 18 16 22 22 H 1.48499 * 109.46924 * 35.41091 * 20 18 16 23 23 H 1.48500 * 109.47119 * 155.40814 * 20 18 16 24 24 C 1.46928 * 118.73792 * 53.86310 * 15 14 13 25 25 C 1.53045 * 109.45701 * 275.07122 * 12 11 9 26 26 H 1.09008 * 109.46777 * 292.07482 * 1 2 3 27 27 H 1.08998 * 109.47377 * 52.06915 * 1 2 3 28 28 H 1.09002 * 109.47562 * 172.07586 * 1 2 3 29 29 H 1.09006 * 109.47075 * 239.99415 * 2 1 3 30 30 H 1.09006 * 109.47055 * 299.99712 * 3 2 1 31 31 H 1.08995 * 109.47265 * 60.00110 * 3 2 1 32 32 H 1.09000 * 109.47291 * 180.02562 * 3 2 1 33 33 H 1.09011 * 117.49733 * 145.01802 * 6 4 2 34 34 H 1.08994 * 117.52401 * 359.97438 * 6 4 2 35 35 H 0.96992 * 120.00287 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.46084 * 35.02171 * 12 11 9 37 37 H 1.09009 * 109.49589 * 61.43327 * 13 12 11 38 38 H 1.08997 * 109.52580 * 301.35197 * 13 12 11 39 39 H 1.08999 * 109.58988 * 185.57850 * 14 13 12 40 40 H 1.09000 * 109.70811 * 65.22069 * 14 13 12 41 41 H 0.97001 * 120.00265 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.58681 * 65.92151 * 24 15 14 43 43 H 1.08993 * 109.59037 * 186.34841 * 24 15 14 44 44 H 1.09004 * 109.49633 * 298.56001 * 25 12 11 45 45 H 1.08993 * 109.50047 * 58.63063 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1390 -0.1033 2.1417 6 6 3.0612 -1.8430 1.0499 7 6 1.6216 -2.1802 1.4430 8 1 1.4453 -2.5223 2.4629 9 6 0.7386 -2.7967 0.3888 10 8 0.9762 -2.6107 -0.7858 11 7 -0.3151 -3.5548 0.7515 12 6 -1.1732 -4.1546 -0.2734 13 6 -1.8556 -5.3996 0.2978 14 6 -2.7248 -6.0435 -0.7869 15 7 -3.6539 -5.0327 -1.3103 16 6 -5.0017 -5.2728 -1.3402 17 1 -5.4460 -5.9474 -0.6234 18 6 -5.7968 -4.6490 -2.2917 19 7 -7.0774 -4.4565 -2.0555 20 14 -5.0497 -4.0826 -3.9073 21 1 -4.4429 -2.7392 -3.7280 22 1 -4.0029 -5.0459 -4.3332 23 1 -6.1095 -4.0125 -4.9452 24 6 -3.1087 -3.7619 -1.8068 25 6 -2.2356 -3.1413 -0.7057 26 1 -0.3633 0.3863 0.9524 27 1 -0.3634 0.6317 -0.8105 28 1 -0.3634 -1.0178 -0.1417 29 1 1.8933 -0.5140 -0.8900 30 1 1.6768 1.9563 -0.8901 31 1 1.6768 1.9563 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 3.8321 -1.9630 1.8112 34 1 3.3697 -2.0677 0.0289 35 1 -0.5054 -3.7032 1.6909 36 1 -0.5677 -4.4354 -1.1351 37 1 -2.4810 -5.1156 1.1443 38 1 -1.0986 -6.1112 0.6273 39 1 -3.2894 -6.8718 -0.3588 40 1 -2.0921 -6.4114 -1.5946 41 1 -7.6330 -4.0203 -2.7203 42 1 -2.5049 -3.9457 -2.6955 43 1 -3.9265 -3.0843 -2.0520 44 1 -2.8574 -2.8787 0.1502 45 1 -1.7486 -2.2452 -1.0902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613877579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:18 Heat of formation + Delta-G solvation = -1.784047 kcal Electronic energy + Delta-G solvation = -23086.499671 eV Core-core repulsion = 19911.899672 eV Total energy + Delta-G solvation = -3174.599999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44023 -38.22320 -36.78545 -34.47860 -33.48651 -32.14644 -30.35909 -30.12391 -27.22822 -25.63452 -23.87450 -23.02890 -22.78149 -21.62523 -20.51199 -19.97391 -19.17042 -17.04373 -16.79973 -16.14173 -15.48664 -15.05752 -14.73679 -14.39834 -14.15723 -13.91203 -13.71592 -13.31580 -13.23259 -12.89992 -12.61164 -12.36442 -12.28050 -12.21924 -11.93990 -11.79358 -11.39363 -11.20502 -11.07048 -10.83565 -10.72742 -10.59584 -10.33557 -10.23097 -10.11415 -10.03629 -9.90695 -9.53178 -9.50191 -8.76256 -8.52820 -6.99780 -5.97225 -3.29197 2.52032 3.25396 3.35991 3.51456 3.56090 3.78545 4.40181 4.55597 4.62683 4.69858 4.87414 4.96873 5.01111 5.17019 5.20246 5.26870 5.30882 5.42764 5.45835 5.55712 5.61764 5.67760 5.76435 5.83122 5.84343 5.88354 5.92243 6.04593 6.11637 6.13466 6.16834 6.31210 6.33739 6.43387 6.51271 6.58803 6.67145 6.73100 6.80803 6.93976 7.67190 7.96227 8.32051 8.38499 8.94279 9.72525 10.10747 11.18583 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.004482 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.639451 B = 6246.365647 C = 6922.902118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 C -0.143 4.143 4 C -0.111 4.111 5 H 0.110 0.890 6 C -0.146 4.146 7 C -0.194 4.194 8 H 0.116 0.884 9 C 0.545 3.455 10 O -0.539 6.539 11 N -0.723 5.723 12 C 0.151 3.849 13 C -0.140 4.140 14 C 0.150 3.850 15 N -0.605 5.605 16 C -0.264 4.264 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.902 5.902 20 Si 0.872 3.128 21 H -0.283 1.283 22 H -0.274 1.274 23 H -0.302 1.302 24 C 0.131 3.869 25 C -0.140 4.140 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.396 0.604 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.024 0.976 41 H 0.263 0.737 42 H 0.023 0.977 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.133 6.544 9.152 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.088 4.088 3 C -0.200 4.200 4 C -0.129 4.129 5 H 0.128 0.872 6 C -0.183 4.183 7 C -0.215 4.215 8 H 0.134 0.866 9 C 0.332 3.668 10 O -0.417 6.417 11 N -0.373 5.373 12 C 0.048 3.952 13 C -0.180 4.180 14 C 0.024 3.976 15 N -0.329 5.329 16 C -0.392 4.392 17 H 0.102 0.898 18 C -0.171 4.171 19 N -0.544 5.544 20 Si 0.702 3.298 21 H -0.211 1.211 22 H -0.199 1.199 23 H -0.229 1.229 24 C 0.005 3.995 25 C -0.180 4.180 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.230 0.770 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.096 6.693 8.238 21.848 hybrid contribution 0.142 0.234 -0.330 0.429 sum 19.239 6.927 7.908 21.924 Atomic orbital electron populations 1.21988 0.94842 1.03102 1.01071 1.20756 0.96030 0.95327 0.96685 1.21816 1.00698 0.95878 1.01634 1.22428 1.01555 0.88592 1.00358 0.87227 1.23088 0.90084 1.01623 1.03532 1.22338 0.98676 1.00921 0.99586 0.86584 1.19455 0.80448 0.77927 0.89020 1.90689 1.72068 1.60206 1.18772 1.46224 1.28898 1.51708 1.10421 1.20983 0.90562 0.93087 0.90596 1.22318 0.98988 0.96039 1.00621 1.20873 0.91518 0.91756 0.93491 1.44434 1.03598 1.11569 1.73301 1.18875 0.80455 1.27878 1.11957 0.89764 1.25254 0.94914 0.98834 0.98126 1.69899 1.06020 1.43765 1.34762 0.87159 0.78163 0.78639 0.85858 1.21062 1.19939 1.22938 1.21428 0.96129 0.88403 0.93543 1.22478 0.97040 0.97804 1.00724 0.93306 0.92796 0.91384 0.89492 0.92627 0.92935 0.92827 0.88213 0.87644 0.77034 0.90031 0.91388 0.92224 0.91431 0.95810 0.92736 0.95887 0.90413 0.91663 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.69 37.16 0.32 -1.62 16 2 C -0.07 -0.78 2.31 -90.62 -0.21 -0.99 16 3 C -0.14 -1.31 9.17 37.16 0.34 -0.97 16 4 C -0.11 -1.06 5.16 -90.62 -0.47 -1.52 16 5 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 6 C -0.15 -1.34 9.70 -26.73 -0.26 -1.60 16 7 C -0.19 -1.97 6.09 -91.78 -0.56 -2.53 16 8 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 9 C 0.54 7.42 5.09 -10.98 -0.06 7.36 16 10 O -0.54 -9.19 13.16 5.56 0.07 -9.12 16 11 N -0.72 -9.42 5.08 -53.76 -0.27 -9.69 16 12 C 0.15 2.44 2.41 -67.89 -0.16 2.27 16 13 C -0.14 -2.17 5.55 -26.61 -0.15 -2.32 16 14 C 0.15 2.89 6.51 -3.71 -0.02 2.87 16 15 N -0.61 -14.36 2.74 -172.05 -0.47 -14.83 16 16 C -0.26 -7.34 9.98 -15.06 -0.15 -7.49 16 17 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 18 C 0.03 0.82 5.12 -17.43 -0.09 0.73 16 19 N -0.90 -27.61 13.97 55.49 0.78 -26.84 16 20 Si 0.87 22.59 24.76 -169.99 -4.21 18.38 16 21 H -0.28 -7.08 6.26 56.52 0.35 -6.73 16 22 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 24 C 0.13 2.95 4.25 -3.48 -0.01 2.94 16 25 C -0.14 -2.61 5.67 -26.38 -0.15 -2.76 16 26 H 0.05 0.56 8.13 -51.92 -0.42 0.14 16 27 H 0.05 0.69 8.13 -51.93 -0.42 0.26 16 28 H 0.07 1.01 3.64 -51.93 -0.19 0.82 16 29 H 0.09 1.17 6.70 -51.93 -0.35 0.82 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 34 H 0.11 1.13 7.79 -51.93 -0.40 0.73 16 35 H 0.40 4.09 8.60 -40.82 -0.35 3.74 16 36 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 37 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.02 0.53 7.44 -51.93 -0.39 0.14 16 43 H 0.08 1.92 4.64 -51.93 -0.24 1.68 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.08 6.93 -51.93 -0.36 0.72 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -31.65 341.15 -8.35 -40.00 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.76 Total: 2.59 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.63 Total: -5.64 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.03 Total: -51.37 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.21 Total: 18.38 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.65 -8.35 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613877579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.219 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds