Wall clock time and date at job start Fri Apr 10 2020 17:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47466 * 2 1 4 4 C 1.53005 * 109.47025 * 120.00287 * 2 1 3 5 5 H 1.09003 * 115.55793 * 273.56957 * 4 2 1 6 6 C 1.52998 * 117.49807 * 127.88864 * 4 2 1 7 7 C 1.52996 * 59.99999 * 252.50493 * 6 4 2 8 8 H 1.09004 * 117.50379 * 252.49296 * 7 6 4 9 9 C 1.50700 * 117.49809 * 107.48757 * 7 6 4 10 10 O 1.21279 * 120.00063 * 335.29759 * 9 7 6 11 11 N 1.34779 * 119.99860 * 155.30010 * 9 7 6 12 12 C 1.46503 * 119.99902 * 180.02562 * 11 9 7 13 13 C 1.53036 * 109.46135 * 154.99993 * 12 11 9 14 14 C 1.53189 * 109.31349 * 181.38546 * 13 12 11 15 15 N 1.46932 * 108.77386 * 305.36208 * 14 13 12 16 16 C 1.36934 * 120.63349 * 233.58195 * 15 14 13 17 17 H 1.08000 * 119.99710 * 27.53002 * 16 15 14 18 18 C 1.38805 * 120.00215 * 207.52596 * 16 15 14 19 19 N 1.31625 * 120.00219 * 205.31049 * 18 16 15 20 20 Si 1.86801 * 120.00100 * 25.31336 * 18 16 15 21 21 H 1.48496 * 109.46991 * 275.40892 * 20 18 16 22 22 H 1.48499 * 109.46924 * 35.41091 * 20 18 16 23 23 H 1.48500 * 109.47119 * 155.40814 * 20 18 16 24 24 C 1.46928 * 118.73792 * 53.86310 * 15 14 13 25 25 C 1.53045 * 109.45701 * 275.07122 * 12 11 9 26 26 H 1.09008 * 109.46777 * 292.07482 * 1 2 3 27 27 H 1.08998 * 109.47377 * 52.06915 * 1 2 3 28 28 H 1.09002 * 109.47562 * 172.07586 * 1 2 3 29 29 H 1.09006 * 109.47075 * 239.99415 * 2 1 3 30 30 H 1.09006 * 109.47055 * 299.99712 * 3 2 1 31 31 H 1.08995 * 109.47265 * 60.00110 * 3 2 1 32 32 H 1.09000 * 109.47291 * 180.02562 * 3 2 1 33 33 H 1.09011 * 117.49733 * 145.01802 * 6 4 2 34 34 H 1.08994 * 117.52401 * 359.97438 * 6 4 2 35 35 H 0.96992 * 120.00287 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.46084 * 35.02171 * 12 11 9 37 37 H 1.09009 * 109.49589 * 61.43327 * 13 12 11 38 38 H 1.08997 * 109.52580 * 301.35197 * 13 12 11 39 39 H 1.08999 * 109.58988 * 185.57850 * 14 13 12 40 40 H 1.09000 * 109.70811 * 65.22069 * 14 13 12 41 41 H 0.97001 * 120.00265 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.58681 * 65.92151 * 24 15 14 43 43 H 1.08993 * 109.59037 * 186.34841 * 24 15 14 44 44 H 1.09004 * 109.49633 * 298.56001 * 25 12 11 45 45 H 1.08993 * 109.50047 * 58.63063 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1390 -0.1033 2.1417 6 6 3.0612 -1.8430 1.0499 7 6 1.6216 -2.1802 1.4430 8 1 1.4453 -2.5223 2.4629 9 6 0.7386 -2.7967 0.3888 10 8 0.9762 -2.6107 -0.7858 11 7 -0.3151 -3.5548 0.7515 12 6 -1.1732 -4.1546 -0.2734 13 6 -1.8556 -5.3996 0.2978 14 6 -2.7248 -6.0435 -0.7869 15 7 -3.6539 -5.0327 -1.3103 16 6 -5.0017 -5.2728 -1.3402 17 1 -5.4460 -5.9474 -0.6234 18 6 -5.7968 -4.6490 -2.2917 19 7 -7.0774 -4.4565 -2.0555 20 14 -5.0497 -4.0826 -3.9073 21 1 -4.4429 -2.7392 -3.7280 22 1 -4.0029 -5.0459 -4.3332 23 1 -6.1095 -4.0125 -4.9452 24 6 -3.1087 -3.7619 -1.8068 25 6 -2.2356 -3.1413 -0.7057 26 1 -0.3633 0.3863 0.9524 27 1 -0.3634 0.6317 -0.8105 28 1 -0.3634 -1.0178 -0.1417 29 1 1.8933 -0.5140 -0.8900 30 1 1.6768 1.9563 -0.8901 31 1 1.6768 1.9563 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 3.8321 -1.9630 1.8112 34 1 3.3697 -2.0677 0.0289 35 1 -0.5054 -3.7032 1.6909 36 1 -0.5677 -4.4354 -1.1351 37 1 -2.4810 -5.1156 1.1443 38 1 -1.0986 -6.1112 0.6273 39 1 -3.2894 -6.8718 -0.3588 40 1 -2.0921 -6.4114 -1.5946 41 1 -7.6330 -4.0203 -2.7203 42 1 -2.5049 -3.9457 -2.6955 43 1 -3.9265 -3.0843 -2.0520 44 1 -2.8574 -2.8787 0.1502 45 1 -1.7486 -2.2452 -1.0902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613877579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:13 Heat of formation + Delta-G solvation = -22.256001 kcal Electronic energy + Delta-G solvation = -23087.387402 eV Core-core repulsion = 19911.899672 eV Total energy + Delta-G solvation = -3175.487729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.47206 -39.58237 -37.93889 -35.95998 -34.36002 -33.99878 -31.95233 -31.78849 -28.11834 -27.21116 -25.21998 -24.41450 -23.80759 -23.14491 -21.47927 -21.27043 -20.36114 -18.85983 -17.90849 -17.56322 -16.76720 -16.47849 -15.97283 -15.73549 -15.51202 -15.34059 -14.98676 -14.65682 -14.61454 -14.22383 -14.11650 -13.86906 -13.56405 -13.43862 -13.06769 -13.02127 -12.73742 -12.52278 -12.26900 -12.20055 -12.11489 -11.98892 -11.85381 -11.71540 -11.49127 -11.40682 -11.10789 -10.90713 -10.76888 -10.59140 -9.97147 -8.99442 -8.21319 -5.48415 1.27357 1.37555 1.45704 1.54501 2.20332 2.39208 2.98260 2.99352 3.33334 3.61835 3.77793 3.84728 3.89985 3.97549 4.08540 4.22245 4.24111 4.30077 4.40990 4.44053 4.46930 4.64841 4.69092 4.72453 4.77457 4.84257 4.90742 4.91892 4.93927 4.99395 5.02756 5.06651 5.10863 5.14807 5.22031 5.31127 5.39025 5.43888 5.56122 5.61373 5.85175 6.10771 6.67060 6.88841 7.37030 7.59844 8.01856 8.98337 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.004482 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.639451 B = 6246.365647 C = 6922.902118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.108 4.108 5 H 0.138 0.862 6 C -0.138 4.138 7 C -0.198 4.198 8 H 0.149 0.851 9 C 0.540 3.460 10 O -0.579 6.579 11 N -0.712 5.712 12 C 0.162 3.838 13 C -0.124 4.124 14 C 0.142 3.858 15 N -0.618 5.618 16 C -0.250 4.250 17 H 0.061 0.939 18 C -0.023 4.023 19 N -0.947 5.947 20 Si 0.926 3.074 21 H -0.274 1.274 22 H -0.274 1.274 23 H -0.305 1.305 24 C 0.128 3.872 25 C -0.127 4.127 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.131 0.869 34 H 0.083 0.917 35 H 0.413 0.587 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.262 0.738 42 H 0.021 0.979 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.934 7.007 11.243 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 C -0.196 4.196 4 C -0.127 4.127 5 H 0.156 0.844 6 C -0.175 4.175 7 C -0.218 4.218 8 H 0.166 0.834 9 C 0.329 3.671 10 O -0.459 6.459 11 N -0.363 5.363 12 C 0.057 3.943 13 C -0.164 4.164 14 C 0.017 3.983 15 N -0.342 5.342 16 C -0.379 4.379 17 H 0.079 0.921 18 C -0.219 4.219 19 N -0.592 5.592 20 Si 0.755 3.245 21 H -0.200 1.200 22 H -0.199 1.199 23 H -0.233 1.233 24 C 0.003 3.997 25 C -0.167 4.167 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.101 0.899 35 H 0.250 0.750 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.950 7.150 10.366 25.305 hybrid contribution -0.694 0.059 -0.958 1.184 sum 21.256 7.209 9.408 24.337 Atomic orbital electron populations 1.21971 0.96180 1.01412 1.01378 1.20692 0.94858 0.96664 0.96625 1.21775 1.01378 0.94401 1.02011 1.22519 1.01376 0.88459 1.00327 0.84441 1.23145 0.90285 1.00796 1.03310 1.22409 0.98453 1.01205 0.99774 0.83351 1.20117 0.80462 0.77243 0.89319 1.90683 1.73031 1.61389 1.20826 1.45991 1.28281 1.51421 1.10621 1.20629 0.89907 0.92647 0.91134 1.22137 0.99096 0.96133 0.98990 1.21114 0.91319 0.91192 0.94707 1.44559 1.02855 1.13155 1.73657 1.18887 0.82439 1.26030 1.10550 0.92138 1.25754 0.95232 1.00208 1.00710 1.69994 1.07381 1.46186 1.35672 0.86270 0.77167 0.78720 0.82326 1.20042 1.19894 1.23334 1.21372 0.95737 0.87731 0.94894 1.22285 0.97086 0.98202 0.99145 0.91935 0.93814 0.93681 0.92500 0.93306 0.91534 0.91693 0.85090 0.89865 0.75032 0.91723 0.91034 0.88625 0.91275 0.95077 0.92891 0.96155 0.93056 0.91909 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.69 71.98 0.63 -3.12 16 2 C -0.07 -1.47 2.31 -10.79 -0.02 -1.50 16 3 C -0.14 -2.25 9.17 71.98 0.66 -1.60 16 4 C -0.11 -1.72 5.16 -10.79 -0.06 -1.77 16 5 H 0.14 1.48 8.11 -2.39 -0.02 1.46 16 6 C -0.14 -2.11 9.70 30.59 0.30 -1.81 16 7 C -0.20 -3.33 6.09 -11.54 -0.07 -3.40 16 8 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 9 C 0.54 13.68 5.09 87.66 0.45 14.13 16 10 O -0.58 -19.52 13.16 -3.03 -0.04 -19.56 16 11 N -0.71 -16.78 5.08 -442.39 -2.25 -19.03 16 12 C 0.16 4.93 2.41 45.02 0.11 5.04 16 13 C -0.12 -3.52 5.55 30.67 0.17 -3.35 16 14 C 0.14 5.26 6.51 86.36 0.56 5.82 16 15 N -0.62 -29.19 2.74 -698.26 -1.92 -31.10 16 16 C -0.25 -14.12 9.98 84.03 0.84 -13.28 16 17 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 18 C -0.02 -1.37 5.12 84.86 0.43 -0.94 16 19 N -0.95 -59.54 13.97 21.65 0.30 -59.24 16 20 Si 0.93 47.71 24.76 68.60 1.70 49.41 16 21 H -0.27 -13.52 6.26 99.48 0.62 -12.90 16 22 H -0.27 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 24 C 0.13 5.78 4.25 86.51 0.37 6.15 16 25 C -0.13 -4.66 5.67 30.82 0.17 -4.49 16 26 H 0.06 1.32 8.13 -2.38 -0.02 1.30 16 27 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.04 1.32 3.64 -2.39 -0.01 1.31 16 29 H 0.06 1.55 6.70 -2.38 -0.02 1.53 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 1.68 7.79 -2.39 -0.02 1.66 16 35 H 0.41 7.03 8.60 -92.71 -0.80 6.24 16 36 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 37 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.02 0.93 7.44 -2.39 -0.02 0.91 16 43 H 0.05 2.56 4.64 -2.39 -0.01 2.55 16 44 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 45 H 0.06 2.07 6.93 -2.39 -0.02 2.06 16 Total: -1.00 -71.00 341.15 2.42 -68.58 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.09 Total: 15.07 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 4.53 Total: -4.12 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -3.86 Total: -109.37 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.04 Total: -19.56 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.70 Total: 49.41 kcal Total: -71.00 2.42 -68.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613877579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.321 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds