Wall clock time and date at job start Fri Apr 10 2020 17:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99709 * 2 1 4 4 N 1.46906 * 109.47340 * 234.99985 * 3 2 1 5 5 C 1.46894 * 110.99853 * 66.56221 * 4 3 2 6 6 C 1.50702 * 109.47112 * 196.10930 * 5 4 3 7 7 H 1.07998 * 120.00098 * 5.04885 * 6 5 4 8 8 C 1.37879 * 119.99918 * 185.04313 * 6 5 4 9 9 N 1.31520 * 120.00047 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99705 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47591 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47236 * 120.00713 * 10 8 6 13 13 H 1.48510 * 109.46985 * 240.00007 * 10 8 6 14 14 C 1.46901 * 110.99960 * 190.52338 * 4 3 2 15 15 N 1.46503 * 109.47308 * 81.04577 * 14 4 3 16 16 C 1.46755 * 124.34951 * 89.99645 * 15 14 4 17 17 C 1.54480 * 105.47705 * 197.01801 * 16 15 14 18 18 H 1.08998 * 110.97152 * 92.70333 * 17 16 15 19 19 C 1.53004 * 110.97154 * 216.43417 * 17 16 15 20 20 C 1.52995 * 109.46831 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46698 * 299.99203 * 19 17 16 22 22 C 1.54630 * 101.76021 * 334.58403 * 17 16 15 23 23 C 1.34416 * 124.34490 * 269.70149 * 15 14 4 24 24 O 1.21276 * 124.94982 * 359.57103 * 23 15 14 25 25 H 1.08000 * 119.99928 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00235 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00700 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47694 * 355.00154 * 3 2 1 29 29 H 1.09008 * 109.46941 * 114.99924 * 3 2 1 30 30 H 1.08996 * 109.47646 * 316.11647 * 5 4 3 31 31 H 1.09007 * 109.46527 * 76.11709 * 5 4 3 32 32 H 0.96991 * 119.99837 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46711 * 201.04312 * 14 4 3 34 34 H 1.08997 * 109.47208 * 321.04241 * 14 4 3 35 35 H 1.09005 * 110.24909 * 316.02214 * 16 15 14 36 36 H 1.09000 * 110.24721 * 77.93063 * 16 15 14 37 37 H 1.08995 * 109.46922 * 59.99563 * 19 17 16 38 38 H 1.09008 * 109.47195 * 299.99432 * 20 19 17 39 39 H 1.09002 * 109.47700 * 59.99708 * 20 19 17 40 40 H 1.09005 * 109.46913 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.46540 * 60.00365 * 21 19 17 42 42 H 1.09002 * 109.47031 * 179.97438 * 21 19 17 43 43 H 1.08999 * 109.47536 * 300.00777 * 21 19 17 44 44 H 1.09000 * 110.48603 * 143.47582 * 22 17 16 45 45 H 1.08999 * 110.48955 * 265.98411 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3321 -1.1345 5 6 2.2711 1.3595 -2.4117 6 6 3.2109 0.9918 -3.5310 7 1 4.2211 0.6819 -3.3080 8 6 2.7809 1.0510 -4.8397 9 7 1.5507 1.4288 -5.1112 10 14 3.9456 0.5945 -6.2269 11 1 5.2621 0.2061 -5.6604 12 1 3.3808 -0.5457 -6.9925 13 1 4.1195 1.7599 -7.1309 14 6 3.9205 2.4691 -1.0292 15 7 5.0089 2.1300 -0.1091 16 6 6.2701 1.4989 -0.5151 17 6 6.8930 0.9477 0.7867 18 1 6.6014 -0.0898 0.9498 19 6 8.4164 1.0888 0.7673 20 6 8.9965 0.5341 2.0699 21 6 8.9858 0.3074 -0.4185 22 6 6.2643 1.8736 1.8536 23 6 4.9829 2.3622 1.2146 24 8 4.0650 2.8849 1.8104 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 -0.0895 29 1 2.6212 1.4027 0.9315 30 1 1.4488 0.6449 -2.3781 31 1 1.8757 2.3607 -2.5835 32 1 1.2484 1.4707 -6.0319 33 1 4.3330 2.6942 -2.0127 34 1 3.3840 3.3398 -0.6523 35 1 6.0770 0.6857 -1.2147 36 1 6.9322 2.2366 -0.9686 37 1 8.6826 2.1413 0.6705 38 1 8.5907 1.0911 2.9145 39 1 8.7302 -0.5184 2.1672 40 1 10.0817 0.6350 2.0563 41 1 8.5724 0.7030 -1.3463 42 1 10.0711 0.4082 -0.4326 43 1 8.7195 -0.7451 -0.3218 44 1 6.0506 1.3153 2.7651 45 1 6.9258 2.7130 2.0679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793560884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:23 Heat of formation + Delta-G solvation = -20.144499 kcal Electronic energy + Delta-G solvation = -22927.831336 eV Core-core repulsion = 19752.435168 eV Total energy + Delta-G solvation = -3175.396168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32361 -37.26168 -36.79263 -34.65583 -33.10775 -32.24360 -30.41853 -28.06548 -27.29329 -26.44020 -25.65340 -23.64540 -22.43467 -20.91294 -19.97632 -19.09956 -18.96984 -16.64238 -16.45062 -16.07513 -15.53054 -14.83937 -14.52063 -14.48066 -14.14424 -13.80342 -13.61436 -13.49388 -13.17072 -13.02672 -12.72565 -12.46021 -12.28966 -12.10351 -11.69796 -11.61265 -11.42652 -11.30019 -11.14235 -10.95861 -10.75066 -10.70041 -10.64881 -10.59446 -10.40712 -10.03171 -9.41877 -9.28604 -8.77122 -8.49373 -8.40180 -7.35124 -6.06490 -4.08990 2.78929 2.93446 3.26606 3.34648 3.37566 3.44372 4.38211 4.42208 4.43957 4.59811 4.90190 5.04602 5.15861 5.18053 5.26884 5.28227 5.50824 5.53781 5.57850 5.64547 5.69178 5.73485 5.74238 5.75345 5.83722 5.94956 6.00361 6.05096 6.14313 6.16982 6.21534 6.29678 6.35254 6.46677 6.80891 7.13465 7.18830 7.27370 7.36328 7.56549 7.78588 8.04453 8.12858 8.47265 8.54184 8.99439 9.55637 11.03734 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.005866 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.397333 B = 4772.183376 C = 6356.890026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C 0.078 3.922 4 N -0.546 5.546 5 C 0.195 3.805 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.294 3.706 15 N -0.599 5.599 16 C 0.110 3.890 17 C -0.095 4.095 18 H 0.090 0.910 19 C -0.084 4.084 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.149 4.149 23 C 0.513 3.487 24 O -0.544 6.544 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.037 0.963 31 H -0.004 1.004 32 H 0.261 0.739 33 H 0.104 0.896 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.693 -1.261 11.504 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.139 4.139 3 C -0.050 4.050 4 N -0.273 5.273 5 C 0.070 3.930 6 C -0.547 4.547 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.083 3.917 15 N -0.332 5.332 16 C -0.013 4.013 17 C -0.114 4.114 18 H 0.109 0.891 19 C -0.103 4.103 20 C -0.205 4.205 21 C -0.209 4.209 22 C -0.190 4.190 23 C 0.300 3.700 24 O -0.423 6.423 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.125 0.875 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.014 0.986 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.298 -1.352 11.587 16.951 hybrid contribution -0.016 0.336 -1.024 1.078 sum 12.282 -1.015 10.563 16.231 Atomic orbital electron populations 1.23675 0.95971 1.01131 1.03671 1.22839 0.95393 0.98667 0.97020 1.21289 0.94443 0.93901 0.95368 1.61859 1.19244 1.42283 1.03866 1.19736 0.93800 0.96192 0.83257 1.21172 0.98770 1.44700 0.90073 0.91923 1.24993 0.95220 0.95430 0.98849 1.69972 1.16264 1.47797 1.19428 0.86483 0.81026 0.78059 0.82072 1.19677 1.21042 1.21119 1.21779 0.85776 0.91005 0.93100 1.48517 1.17159 1.59663 1.07871 1.22124 0.84466 0.97883 0.96876 1.22247 0.94851 1.00057 0.94275 0.89144 1.21106 0.93039 1.00399 0.95723 1.21849 1.00468 1.01229 0.96941 1.21880 1.00484 1.00509 0.97980 1.22409 0.96147 1.00804 0.99590 1.20878 0.88223 0.78129 0.82728 1.90681 1.39580 1.44933 1.67062 0.88966 0.89148 0.87541 0.95491 0.90435 0.94534 0.98637 0.92930 0.87841 0.93352 0.89512 0.91433 0.90887 0.92553 0.92545 0.92732 0.92036 0.92763 0.92421 0.88629 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.58 14.32 29.02 0.42 -3.17 16 2 C -0.12 -2.28 8.47 -36.02 -0.30 -2.59 16 3 C 0.08 1.58 5.25 -4.97 -0.03 1.55 16 4 N -0.55 -11.82 4.54 -241.42 -1.09 -12.91 16 5 C 0.20 4.99 4.57 -4.98 -0.02 4.96 16 6 C -0.51 -13.68 8.31 -34.44 -0.29 -13.96 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 10 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.29 5.78 5.58 -63.31 -0.35 5.43 16 15 N -0.60 -9.89 3.14 -175.91 -0.55 -10.44 16 16 C 0.11 1.44 5.84 -3.13 -0.02 1.42 16 17 C -0.10 -0.99 2.68 -88.98 -0.24 -1.23 16 18 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.08 -0.69 2.28 -90.62 -0.21 -0.90 16 20 C -0.15 -1.06 9.05 37.16 0.34 -0.72 16 21 C -0.15 -1.25 8.97 37.16 0.33 -0.91 16 22 C -0.15 -1.71 5.64 -26.73 -0.15 -1.86 16 23 C 0.51 8.43 7.30 -10.86 -0.08 8.35 16 24 O -0.54 -10.91 16.04 5.56 0.09 -10.82 16 25 H 0.09 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.09 1.54 7.84 -52.49 -0.41 1.13 16 27 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.03 0.57 7.77 -51.93 -0.40 0.16 16 29 H 0.08 1.59 5.54 -51.92 -0.29 1.30 16 30 H 0.04 1.01 6.92 -51.93 -0.36 0.65 16 31 H 0.00 -0.12 8.05 -51.93 -0.42 -0.54 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.10 2.11 7.08 -51.93 -0.37 1.74 16 34 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 0.79 7.71 -51.93 -0.40 0.39 16 37 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 38 H 0.06 0.39 7.55 -51.92 -0.39 0.00 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.55 7.17 -51.93 -0.37 0.18 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.10 0.97 7.84 -51.93 -0.41 0.56 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -30.61 360.02 -9.10 -39.72 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.99 Total: 0.63 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.70 Total: -2.16 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.91 Total: -48.72 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.61 -9.10 -39.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.573 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds