Wall clock time and date at job start Fri Apr 10 2020 17:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99709 * 2 1 4 4 N 1.46906 * 109.47340 * 234.99985 * 3 2 1 5 5 C 1.46894 * 110.99853 * 66.56221 * 4 3 2 6 6 C 1.50702 * 109.47112 * 196.10930 * 5 4 3 7 7 H 1.07998 * 120.00098 * 5.04885 * 6 5 4 8 8 C 1.37879 * 119.99918 * 185.04313 * 6 5 4 9 9 N 1.31520 * 120.00047 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99705 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47591 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47236 * 120.00713 * 10 8 6 13 13 H 1.48510 * 109.46985 * 240.00007 * 10 8 6 14 14 C 1.46901 * 110.99960 * 190.52338 * 4 3 2 15 15 N 1.46503 * 109.47308 * 81.04577 * 14 4 3 16 16 C 1.46755 * 124.34951 * 89.99645 * 15 14 4 17 17 C 1.54480 * 105.47705 * 197.01801 * 16 15 14 18 18 H 1.08998 * 110.97152 * 92.70333 * 17 16 15 19 19 C 1.53004 * 110.97154 * 216.43417 * 17 16 15 20 20 C 1.52995 * 109.46831 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46698 * 299.99203 * 19 17 16 22 22 C 1.54630 * 101.76021 * 334.58403 * 17 16 15 23 23 C 1.34416 * 124.34490 * 269.70149 * 15 14 4 24 24 O 1.21276 * 124.94982 * 359.57103 * 23 15 14 25 25 H 1.08000 * 119.99928 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00235 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00700 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47694 * 355.00154 * 3 2 1 29 29 H 1.09008 * 109.46941 * 114.99924 * 3 2 1 30 30 H 1.08996 * 109.47646 * 316.11647 * 5 4 3 31 31 H 1.09007 * 109.46527 * 76.11709 * 5 4 3 32 32 H 0.96991 * 119.99837 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46711 * 201.04312 * 14 4 3 34 34 H 1.08997 * 109.47208 * 321.04241 * 14 4 3 35 35 H 1.09005 * 110.24909 * 316.02214 * 16 15 14 36 36 H 1.09000 * 110.24721 * 77.93063 * 16 15 14 37 37 H 1.08995 * 109.46922 * 59.99563 * 19 17 16 38 38 H 1.09008 * 109.47195 * 299.99432 * 20 19 17 39 39 H 1.09002 * 109.47700 * 59.99708 * 20 19 17 40 40 H 1.09005 * 109.46913 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.46540 * 60.00365 * 21 19 17 42 42 H 1.09002 * 109.47031 * 179.97438 * 21 19 17 43 43 H 1.08999 * 109.47536 * 300.00777 * 21 19 17 44 44 H 1.09000 * 110.48603 * 143.47582 * 22 17 16 45 45 H 1.08999 * 110.48955 * 265.98411 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3321 -1.1345 5 6 2.2711 1.3595 -2.4117 6 6 3.2109 0.9918 -3.5310 7 1 4.2211 0.6819 -3.3080 8 6 2.7809 1.0510 -4.8397 9 7 1.5507 1.4288 -5.1112 10 14 3.9456 0.5945 -6.2269 11 1 5.2621 0.2061 -5.6604 12 1 3.3808 -0.5457 -6.9925 13 1 4.1195 1.7599 -7.1309 14 6 3.9205 2.4691 -1.0292 15 7 5.0089 2.1300 -0.1091 16 6 6.2701 1.4989 -0.5151 17 6 6.8930 0.9477 0.7867 18 1 6.6014 -0.0898 0.9498 19 6 8.4164 1.0888 0.7673 20 6 8.9965 0.5341 2.0699 21 6 8.9858 0.3074 -0.4185 22 6 6.2643 1.8736 1.8536 23 6 4.9829 2.3622 1.2146 24 8 4.0650 2.8849 1.8104 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 -0.0895 29 1 2.6212 1.4027 0.9315 30 1 1.4488 0.6449 -2.3781 31 1 1.8757 2.3607 -2.5835 32 1 1.2484 1.4707 -6.0319 33 1 4.3330 2.6942 -2.0127 34 1 3.3840 3.3398 -0.6523 35 1 6.0770 0.6857 -1.2147 36 1 6.9322 2.2366 -0.9686 37 1 8.6826 2.1413 0.6705 38 1 8.5907 1.0911 2.9145 39 1 8.7302 -0.5184 2.1672 40 1 10.0817 0.6350 2.0563 41 1 8.5724 0.7030 -1.3463 42 1 10.0711 0.4082 -0.4326 43 1 8.7195 -0.7451 -0.3218 44 1 6.0506 1.3153 2.7651 45 1 6.9258 2.7130 2.0679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793560884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:22 Heat of formation + Delta-G solvation = -38.351328 kcal Electronic energy + Delta-G solvation = -22928.620843 eV Core-core repulsion = 19752.435168 eV Total energy + Delta-G solvation = -3176.185675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55751 -38.68712 -38.16113 -35.81482 -35.00036 -33.87961 -31.63005 -29.36679 -28.81094 -27.36024 -27.06672 -25.49936 -23.43301 -22.64514 -20.78183 -20.64322 -20.30669 -18.57452 -17.84345 -17.37045 -17.12521 -16.36234 -16.11591 -15.57780 -15.47448 -15.11868 -15.04382 -14.68689 -14.33945 -14.13127 -14.03692 -13.82877 -13.60388 -13.38827 -13.04929 -12.94519 -12.87229 -12.63251 -12.50964 -12.38676 -12.26277 -12.10782 -11.86758 -11.66666 -11.43534 -11.37918 -11.31216 -10.73707 -10.63186 -10.26149 -9.83011 -9.17932 -8.18500 -6.29232 1.32885 1.42658 1.44034 1.56561 1.59764 2.10420 2.41524 3.14406 3.33321 3.42219 3.53427 3.77691 4.02798 4.07241 4.15698 4.23852 4.31259 4.47741 4.50284 4.53196 4.55116 4.65676 4.73849 4.77321 4.85468 4.91657 4.96418 4.98866 5.09397 5.13704 5.16635 5.18795 5.29047 5.38435 5.46891 5.56434 5.61688 5.65507 5.69183 5.81732 6.04048 6.21277 6.27675 6.52870 6.86021 7.19191 7.40809 8.92448 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.005866 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.397333 B = 4772.183376 C = 6356.890026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C 0.085 3.915 4 N -0.543 5.543 5 C 0.214 3.786 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.968 3.032 11 H -0.257 1.257 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.300 3.700 15 N -0.603 5.603 16 C 0.106 3.894 17 C -0.081 4.081 18 H 0.090 0.910 19 C -0.077 4.077 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.135 4.135 23 C 0.502 3.498 24 O -0.587 6.587 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.012 0.988 29 H 0.076 0.924 30 H 0.013 0.987 31 H -0.037 1.037 32 H 0.263 0.737 33 H 0.093 0.907 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.111 0.889 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.181 -2.278 11.978 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.163 4.163 3 C -0.043 4.043 4 N -0.269 5.269 5 C 0.087 3.913 6 C -0.555 4.555 7 H 0.085 0.915 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.792 3.208 11 H -0.181 1.181 12 H -0.208 1.208 13 H -0.207 1.207 14 C 0.088 3.912 15 N -0.335 5.335 16 C -0.016 4.016 17 C -0.100 4.100 18 H 0.109 0.891 19 C -0.096 4.096 20 C -0.203 4.203 21 C -0.209 4.209 22 C -0.174 4.174 23 C 0.291 3.709 24 O -0.468 6.468 25 H 0.137 0.863 26 H 0.108 0.892 27 H 0.131 0.869 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.031 0.969 31 H -0.019 1.019 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.129 0.871 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.832 -2.381 12.083 19.279 hybrid contribution -0.848 0.680 -1.136 1.573 sum 13.984 -1.701 10.947 17.841 Atomic orbital electron populations 1.23920 0.95530 1.02378 1.00997 1.22833 0.96062 0.97998 0.99450 1.21224 0.93994 0.94458 0.94588 1.61869 1.19187 1.43109 1.02773 1.19356 0.93307 0.93484 0.85116 1.21412 0.98967 1.44463 0.90658 0.91501 1.25892 0.96795 0.95138 1.01572 1.70106 1.18311 1.48911 1.20142 0.85357 0.79259 0.77678 0.78472 1.18110 1.20845 1.20654 1.21505 0.86283 0.90021 0.93352 1.48562 1.17277 1.59844 1.07838 1.22341 0.83216 0.97765 0.98301 1.22220 0.96309 0.99555 0.91903 0.89145 1.21075 0.90960 1.01062 0.96457 1.21838 1.01089 1.01192 0.96215 1.21886 1.01248 1.00293 0.97503 1.22416 0.93446 1.01781 0.99775 1.21808 0.89391 0.77167 0.82488 1.90653 1.41600 1.46732 1.67802 0.86317 0.89241 0.86945 0.97004 0.90572 0.96873 1.01915 0.92771 0.88848 0.94858 0.91059 0.89726 0.90052 0.92024 0.92601 0.91732 0.92979 0.91559 0.92661 0.87120 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.53 14.32 67.79 0.97 -5.56 16 2 C -0.15 -5.54 8.47 25.65 0.22 -5.32 16 3 C 0.08 3.57 5.25 85.56 0.45 4.02 16 4 N -0.54 -24.35 4.54 -917.72 -4.16 -28.51 16 5 C 0.21 11.36 4.57 85.56 0.39 11.75 16 6 C -0.52 -28.22 8.31 25.60 0.21 -28.01 16 7 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 8 C 0.00 0.23 5.46 84.65 0.46 0.70 16 9 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 10 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.30 12.26 5.58 170.80 0.95 13.22 16 15 N -0.60 -19.94 3.14 -829.04 -2.61 -22.54 16 16 C 0.11 2.65 5.84 86.83 0.51 3.16 16 17 C -0.08 -1.49 2.68 -9.73 -0.03 -1.51 16 18 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 19 C -0.08 -1.02 2.28 -10.79 -0.02 -1.04 16 20 C -0.15 -1.59 9.05 71.98 0.65 -0.93 16 21 C -0.15 -2.11 8.97 71.98 0.65 -1.47 16 22 C -0.13 -2.75 5.64 30.59 0.17 -2.57 16 23 C 0.50 16.26 7.30 87.90 0.64 16.90 16 24 O -0.59 -23.83 16.04 -3.02 -0.05 -23.88 16 25 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 26 H 0.09 3.06 7.84 -2.91 -0.02 3.04 16 27 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 28 H 0.01 0.52 7.77 -2.39 -0.02 0.50 16 29 H 0.08 3.22 5.54 -2.38 -0.01 3.21 16 30 H 0.01 0.76 6.92 -2.39 -0.02 0.74 16 31 H -0.04 -2.17 8.05 -2.38 -0.02 -2.19 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.09 3.96 7.08 -2.39 -0.02 3.94 16 34 H 0.03 1.45 7.69 -2.39 -0.02 1.43 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.08 1.84 7.71 -2.39 -0.02 1.82 16 37 H 0.08 1.00 8.06 -2.39 -0.02 0.98 16 38 H 0.06 0.62 7.55 -2.38 -0.02 0.60 16 39 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.05 0.82 7.17 -2.38 -0.02 0.80 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.12 1.98 7.84 -2.39 -0.02 1.96 16 Total: -1.00 -67.50 360.02 2.65 -64.85 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.93 Total: 17.13 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.22 Total: 3.33 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -6.48 Total: -106.25 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -67.50 2.65 -64.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.501 kcal (2) G-P(sol) polarization free energy of solvation -67.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds