Wall clock time and date at job start Fri Apr 10 2020 17:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 H 1.08998 * 110.85540 * 51.20421 * 3 2 1 5 5 C 1.54635 * 110.96540 * 287.37797 * 3 2 1 6 6 C 1.51282 * 104.25487 * 266.46006 * 5 3 2 7 7 O 1.21284 * 124.94454 * 164.00838 * 6 5 3 8 8 N 1.34420 * 110.11407 * 344.14558 * 6 5 3 9 9 C 1.46503 * 124.35066 * 179.43566 * 8 6 5 10 10 N 1.46900 * 109.47039 * 269.70528 * 9 8 6 11 11 C 1.46841 * 111.00203 * 30.78791 * 10 9 8 12 12 C 1.53041 * 109.52155 * 185.83968 * 11 10 9 13 13 C 1.53119 * 109.30992 * 300.84081 * 12 11 10 14 14 C 1.53117 * 109.15851 * 57.59525 * 13 12 11 15 15 H 1.09001 * 109.50449 * 62.36518 * 14 13 12 16 16 C 1.50702 * 109.50211 * 182.44373 * 14 13 12 17 17 H 1.08002 * 120.00299 * 119.92735 * 16 14 13 18 18 C 1.37884 * 119.99942 * 299.64293 * 16 14 13 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 14 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 14 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.46852 * 110.99581 * 155.00195 * 10 9 8 25 25 C 1.46762 * 111.30185 * 359.17598 * 8 6 5 26 26 H 1.08996 * 109.46892 * 60.00706 * 1 2 3 27 27 H 1.09002 * 109.47078 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47353 * 299.99742 * 1 2 3 29 29 H 1.09001 * 109.47266 * 239.99604 * 2 1 3 30 30 H 1.09002 * 109.46832 * 119.99999 * 2 1 3 31 31 H 1.09000 * 110.48580 * 25.35572 * 5 3 2 32 32 H 1.08998 * 110.48299 * 148.00235 * 5 3 2 33 33 H 1.09000 * 109.47069 * 149.70292 * 9 8 6 34 34 H 1.09004 * 109.47007 * 29.70434 * 9 8 6 35 35 H 1.09001 * 109.46408 * 305.85430 * 11 10 9 36 36 H 1.08999 * 109.46304 * 65.83320 * 11 10 9 37 37 H 1.08996 * 109.50093 * 60.76241 * 12 11 10 38 38 H 1.08997 * 109.50010 * 180.84358 * 12 11 10 39 39 H 1.09005 * 109.49490 * 297.71333 * 13 12 11 40 40 H 1.09003 * 109.55493 * 177.52421 * 13 12 11 41 41 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 42 42 H 1.08992 * 109.46814 * 54.14173 * 24 10 9 43 43 H 1.08998 * 109.44946 * 294.16257 * 24 10 9 44 44 H 1.09001 * 110.24979 * 136.28248 * 25 8 6 45 45 H 1.09008 * 110.24389 * 258.19306 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5677 2.0211 0.7939 5 6 1.8178 2.1079 -1.3781 6 6 3.1184 1.8792 -2.1162 7 8 3.2678 1.9988 -3.3139 8 7 4.0836 1.5210 -1.2520 9 6 5.4636 1.2126 -1.6352 10 7 5.5824 -0.2229 -1.9238 11 6 4.3226 -0.7590 -2.4546 12 6 4.4365 -2.2777 -2.6059 13 6 5.5927 -2.6067 -3.5543 14 6 6.8839 -1.9950 -3.0037 15 1 7.1134 -2.4400 -2.0355 16 6 8.0160 -2.2629 -3.9617 17 1 8.5515 -1.4386 -4.4089 18 6 8.3718 -3.5606 -4.2626 19 7 9.3633 -3.7945 -5.0944 20 14 7.4456 -4.9864 -3.4890 21 1 6.3006 -5.3620 -4.3569 22 1 8.3584 -6.1487 -3.3432 23 1 6.9415 -4.5821 -2.1520 24 6 6.6991 -0.4845 -2.8409 25 6 3.5791 1.4847 0.1257 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.9894 1.6317 -1.9025 32 1 1.6330 3.1757 -1.2607 33 1 6.1351 1.4757 -0.8180 34 1 5.7305 1.7851 -2.5236 35 1 3.5094 -0.5224 -1.7684 36 1 4.1186 -0.3115 -3.4274 37 1 4.6268 -2.7271 -1.6313 38 1 3.5065 -2.6734 -3.0139 39 1 5.3842 -2.1909 -4.5401 40 1 5.7055 -3.6882 -3.6306 41 1 9.6134 -4.7074 -5.3064 42 1 7.6120 -0.0486 -2.4352 43 1 6.4837 -0.0383 -3.8117 44 1 3.9405 0.5921 0.6364 45 1 3.8904 2.3794 0.6651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853523930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:05 Heat of formation + Delta-G solvation = -28.770536 kcal Electronic energy + Delta-G solvation = -23536.801982 eV Core-core repulsion = 20361.031761 eV Total energy + Delta-G solvation = -3175.770221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.89870 -38.13482 -36.91775 -34.81669 -33.11469 -31.91378 -30.35656 -29.88370 -27.83476 -25.80854 -24.92193 -23.67194 -22.36369 -21.19532 -20.73445 -19.34611 -18.81409 -17.06454 -16.61924 -16.44415 -15.67601 -15.30508 -14.74130 -14.43248 -14.31690 -13.83807 -13.68764 -13.61285 -13.38890 -13.26744 -12.81588 -12.61529 -12.36356 -12.20516 -12.13411 -11.97252 -11.86583 -11.37621 -11.06473 -11.03080 -10.98581 -10.83750 -10.46178 -10.06366 -9.94424 -9.78453 -9.67167 -9.10310 -8.93710 -8.90221 -8.48311 -7.76139 -6.03896 -4.02834 2.52905 2.96285 3.31277 3.41380 3.44934 4.12941 4.18041 4.38905 4.42244 4.45294 4.69799 4.95966 5.09357 5.18283 5.27536 5.28228 5.32289 5.36350 5.44970 5.48361 5.53575 5.61649 5.66437 5.69945 5.76920 5.83212 5.94575 6.00993 6.13898 6.18127 6.29725 6.32914 6.41961 6.53165 6.63990 6.82296 6.88837 7.08475 7.21760 7.44062 7.53945 7.66868 7.88027 8.16047 8.55324 8.99427 9.58896 11.09439 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026328 B = 0.004773 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.246588 B = 5865.453378 C = 6391.290537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.100 4.100 4 H 0.097 0.903 5 C -0.153 4.153 6 C 0.515 3.485 7 O -0.529 6.529 8 N -0.617 5.617 9 C 0.291 3.709 10 N -0.553 5.553 11 C 0.059 3.941 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.023 3.977 15 H 0.035 0.965 16 C -0.514 4.514 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.902 5.902 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.299 1.299 23 H -0.264 1.264 24 C 0.078 3.922 25 C 0.107 3.893 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.263 0.737 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.085 0.915 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.177 10.576 14.025 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.119 4.119 4 H 0.115 0.885 5 C -0.193 4.193 6 C 0.303 3.697 7 O -0.404 6.404 8 N -0.352 5.352 9 C 0.081 3.919 10 N -0.281 5.281 11 C -0.069 4.069 12 C -0.156 4.156 13 C -0.160 4.160 14 C 0.004 3.996 15 H 0.053 0.947 16 C -0.552 4.552 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.541 5.541 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.188 1.188 24 C -0.049 4.049 25 C -0.016 4.016 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.104 0.896 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.801 10.274 13.717 23.999 hybrid contribution -0.528 -0.486 -0.443 0.843 sum -17.328 9.788 13.273 23.922 Atomic orbital electron populations 1.21786 0.95453 1.01934 1.01771 1.21641 0.96121 0.94974 1.03113 1.22239 0.94880 0.97551 0.97195 0.88516 1.22465 0.97086 1.03187 0.96531 1.20931 0.86569 0.75623 0.86608 1.90759 1.83850 1.51976 1.13841 1.48402 1.10848 1.67681 1.08281 1.22061 0.80254 0.89649 0.99962 1.62474 1.05744 1.12399 1.47482 1.22063 0.91572 0.95436 0.97793 1.21646 0.98619 0.94817 1.00483 1.22019 0.95875 0.99721 0.98337 1.19132 0.92847 0.90466 0.97178 0.94674 1.21004 1.14777 0.93622 1.25804 0.90926 1.24976 0.94742 0.98752 0.94585 1.69901 1.28547 1.20585 1.35047 0.86823 0.78839 0.81775 0.80693 1.20756 1.22639 1.18850 1.22092 0.91083 0.99385 0.92300 1.22182 0.93329 1.02806 0.83320 0.92615 0.92508 0.92648 0.91283 0.91061 0.87969 0.88022 0.89044 0.92650 0.91609 0.94743 0.92067 0.93065 0.92574 0.93589 0.92709 0.91329 0.95169 0.89619 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.80 37.16 0.36 -0.63 16 2 C -0.12 -0.93 5.28 -26.73 -0.14 -1.07 16 3 C -0.10 -0.70 3.12 -88.99 -0.28 -0.98 16 4 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.15 -1.36 6.28 -26.74 -0.17 -1.53 16 6 C 0.52 7.09 6.26 -10.86 -0.07 7.02 16 7 O -0.53 -9.78 16.65 5.55 0.09 -9.69 16 8 N -0.62 -7.69 1.85 -175.90 -0.33 -8.01 16 9 C 0.29 4.28 6.40 -63.31 -0.41 3.87 16 10 N -0.55 -9.78 4.91 -238.57 -1.17 -10.95 16 11 C 0.06 1.05 4.27 -3.83 -0.02 1.03 16 12 C -0.12 -2.20 6.09 -26.65 -0.16 -2.37 16 13 C -0.12 -2.76 4.74 -26.61 -0.13 -2.89 16 14 C 0.02 0.55 1.85 -91.69 -0.17 0.38 16 15 H 0.04 0.88 7.19 -51.93 -0.37 0.51 16 16 C -0.51 -14.64 9.14 -34.44 -0.31 -14.95 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 19 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 20 Si 0.89 22.47 24.35 -169.99 -4.14 18.33 16 21 H -0.28 -6.96 6.90 56.52 0.39 -6.57 16 22 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.26 -6.40 6.52 56.52 0.37 -6.04 16 24 C 0.08 1.64 4.52 -3.83 -0.02 1.62 16 25 C 0.11 0.91 6.74 -3.13 -0.02 0.89 16 26 H 0.05 0.36 6.90 -51.93 -0.36 0.00 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.70 6.03 -51.93 -0.31 0.38 16 30 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.10 0.89 6.69 -51.93 -0.35 0.54 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.91 7.63 -51.93 -0.40 0.51 16 35 H 0.07 1.02 4.01 -51.93 -0.21 0.81 16 36 H 0.03 0.69 7.19 -51.93 -0.37 0.32 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.05 1.09 3.37 -51.93 -0.18 0.91 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.75 7.88 -51.93 -0.41 0.34 16 45 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -33.17 333.05 -9.00 -42.17 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.62 Total: -1.99 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.62 Total: -7.61 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.72 Total: -46.22 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.14 Total: 18.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.17 -9.00 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.395 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds