Wall clock time and date at job start Fri Apr 10 2020 17:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47385 * 2 1 4 4 N 1.46496 * 109.46900 * 176.73642 * 3 2 1 5 5 C 1.34774 * 120.00042 * 84.35728 * 4 3 2 6 6 O 1.21286 * 120.00391 * 179.97438 * 5 4 3 7 7 C 1.50706 * 120.00006 * 359.97438 * 5 4 3 8 8 H 1.08997 * 115.56082 * 325.70893 * 7 5 4 9 9 C 1.52999 * 117.49591 * 111.39198 * 7 5 4 10 10 C 1.52997 * 60.03097 * 107.50556 * 9 7 5 11 11 H 1.09003 * 117.50210 * 252.48110 * 10 9 7 12 12 C 1.53002 * 117.50036 * 107.47794 * 10 9 7 13 13 C 1.46504 * 120.00142 * 264.35061 * 4 3 2 14 14 H 1.09001 * 110.88373 * 170.52618 * 13 4 3 15 15 C 1.55149 * 111.00601 * 294.40344 * 13 4 3 16 16 C 1.54326 * 102.94402 * 153.57538 * 15 13 4 17 17 N 1.47026 * 107.26915 * 337.81023 * 16 15 13 18 18 C 1.36931 * 125.64768 * 178.99414 * 17 16 15 19 19 H 1.07997 * 120.00419 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00043 * 359.97438 * 18 17 16 21 21 N 1.31622 * 120.00014 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99991 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47078 * 90.00241 * 22 20 18 24 24 H 1.48505 * 109.47109 * 209.99803 * 22 20 18 25 25 H 1.48495 * 109.47550 * 330.00064 * 22 20 18 26 26 C 1.47470 * 108.72006 * 358.97393 * 17 16 15 27 27 H 1.09007 * 109.46987 * 300.00325 * 1 2 3 28 28 H 1.09003 * 109.46733 * 59.99624 * 1 2 3 29 29 H 1.08991 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47396 * 239.99843 * 2 1 3 31 31 H 1.09008 * 109.46838 * 119.99647 * 2 1 3 32 32 H 1.08997 * 109.46868 * 56.74051 * 3 2 1 33 33 H 1.08997 * 109.47351 * 296.73979 * 3 2 1 34 34 H 1.08999 * 117.49853 * 0.02562 * 9 7 5 35 35 H 1.08998 * 117.49849 * 215.00612 * 9 7 5 36 36 H 1.08994 * 109.47337 * 111.39568 * 12 10 9 37 37 H 1.09002 * 109.46989 * 231.39175 * 12 10 9 38 38 H 1.08996 * 109.46789 * 351.39040 * 12 10 9 39 39 H 1.08997 * 110.72489 * 271.94221 * 15 13 4 40 40 H 1.09002 * 110.72165 * 35.21524 * 15 13 4 41 41 H 1.09000 * 109.87926 * 97.22866 * 16 15 13 42 42 H 1.09006 * 109.88244 * 218.23930 * 16 15 13 43 43 H 0.97000 * 120.00058 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.34712 * 265.24715 * 26 17 16 45 45 H 1.08998 * 110.40106 * 142.92145 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5029 1.4431 0.0786 5 6 4.2381 1.3066 -1.0427 6 8 5.4492 1.3076 -0.9777 7 6 3.5553 1.1528 -2.3773 8 1 2.6150 0.6017 -2.3638 9 6 3.6835 2.3069 -3.3736 10 6 4.4451 1.0018 -3.6136 11 1 5.5245 1.0137 -3.4620 12 6 3.9464 0.0889 -4.7356 13 6 4.1667 1.5923 1.3761 14 1 5.2373 1.4068 1.2885 15 6 3.8930 2.9937 1.9830 16 6 4.0320 2.7465 3.5000 17 7 3.8164 1.3104 3.7298 18 6 3.8741 0.6790 4.9435 19 1 3.6994 -0.3848 5.0076 20 6 4.1572 1.4062 6.0915 21 7 4.3707 2.7026 6.0134 22 14 4.2353 0.5449 7.7472 23 1 5.6232 0.0803 7.9986 24 1 3.8287 1.4911 8.8171 25 1 3.3162 -0.6214 7.7424 26 6 3.5271 0.6624 2.4371 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6298 1.9729 0.8593 33 1 1.7253 1.9392 -0.9177 34 1 4.2620 3.1772 -3.0638 35 1 2.8274 2.5153 -4.0152 36 1 4.6757 0.0770 -5.5456 37 1 3.8151 -0.9221 -4.3501 38 1 2.9931 0.4615 -5.1104 39 1 4.6354 3.7142 1.6401 40 1 2.8856 3.3301 1.7379 41 1 5.0311 3.0292 3.8316 42 1 3.2842 3.3272 4.0403 43 1 4.5681 3.2109 6.8156 44 1 2.4506 0.5924 2.2807 45 1 3.9821 -0.3273 2.3980 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267546535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:10 Heat of formation + Delta-G solvation = -10.728089 kcal Electronic energy + Delta-G solvation = -22999.249431 eV Core-core repulsion = 19824.261590 eV Total energy + Delta-G solvation = -3174.987841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49887 -39.37943 -37.60133 -36.98127 -34.53307 -33.36183 -31.11219 -29.85291 -28.97211 -27.27096 -26.57263 -24.85207 -22.71026 -22.05430 -21.98167 -21.21240 -19.91217 -18.92731 -18.58157 -17.54049 -16.71786 -16.17015 -15.97405 -15.74159 -15.59795 -15.04120 -14.74309 -14.27166 -14.19164 -14.01647 -13.99424 -13.77694 -13.68258 -13.03146 -12.94867 -12.92444 -12.76969 -12.69446 -12.50649 -12.28441 -12.13397 -12.04798 -12.00052 -11.82304 -11.56126 -11.49465 -11.27861 -10.97081 -10.75175 -10.74060 -9.67476 -8.94221 -7.87525 -5.24732 1.43963 1.45598 1.47430 1.55903 1.87323 2.48611 2.87261 3.30924 3.43049 3.64133 3.79461 3.83628 3.88341 3.95026 4.00160 4.13304 4.15971 4.28437 4.42903 4.44983 4.54241 4.55458 4.59462 4.74242 4.77520 4.81423 4.89838 4.92534 4.97135 5.00724 5.08307 5.08519 5.22405 5.25108 5.32958 5.39795 5.45401 5.47581 5.57382 5.63186 5.69177 6.14883 6.43824 7.05704 7.15412 7.71636 8.35987 9.22688 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.004145 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.656305 B = 6753.718843 C = 7212.410947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.145 4.145 3 C 0.105 3.895 4 N -0.591 5.591 5 C 0.535 3.465 6 O -0.594 6.594 7 C -0.193 4.193 8 H 0.151 0.849 9 C -0.132 4.132 10 C -0.131 4.131 11 H 0.087 0.913 12 C -0.116 4.116 13 C 0.138 3.862 14 H 0.073 0.927 15 C -0.133 4.133 16 C 0.190 3.810 17 N -0.625 5.625 18 C -0.246 4.246 19 H 0.083 0.917 20 C -0.064 4.064 21 N -0.951 5.951 22 Si 0.981 3.019 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.266 1.266 26 C 0.135 3.865 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.008 0.992 42 H 0.018 0.982 43 H 0.248 0.752 44 H 0.050 0.950 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.318 -2.801 -21.576 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.183 4.183 3 C -0.017 4.017 4 N -0.320 5.320 5 C 0.326 3.674 6 O -0.475 6.475 7 C -0.214 4.214 8 H 0.169 0.831 9 C -0.169 4.169 10 C -0.150 4.150 11 H 0.105 0.895 12 C -0.173 4.173 13 C 0.032 3.968 14 H 0.091 0.909 15 C -0.173 4.173 16 C 0.065 3.935 17 N -0.352 5.352 18 C -0.374 4.374 19 H 0.101 0.899 20 C -0.257 4.257 21 N -0.599 5.599 22 Si 0.809 3.191 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.191 1.191 26 C 0.009 3.991 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.156 0.844 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.026 0.974 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.678 -2.754 -21.322 23.184 hybrid contribution 0.671 -0.184 1.742 1.876 sum -8.007 -2.937 -19.580 21.357 Atomic orbital electron populations 1.21660 0.93334 1.02514 1.02635 1.22084 0.97672 0.96204 1.02375 1.21886 0.77212 0.98153 1.04410 1.47872 1.07959 1.71026 1.05180 1.20490 0.86448 0.74428 0.86073 1.90657 1.16415 1.53000 1.87460 1.22420 1.03394 1.08519 0.87047 0.83136 1.23210 1.03395 0.91189 0.99115 1.22433 0.97616 0.99761 0.95141 0.89481 1.21386 1.02011 0.98191 0.95746 1.21919 0.96813 0.95771 0.82265 0.90901 1.23037 1.02204 0.96308 0.95706 1.20848 0.97704 0.84524 0.90454 1.44681 1.83307 1.04699 1.02473 1.19446 1.41167 0.92840 0.83997 0.89935 1.25684 1.01923 0.96591 1.01497 1.70183 1.55200 1.06653 1.27887 0.85042 0.77744 0.77439 0.78870 1.21492 1.21807 1.19103 1.21953 0.98021 0.94423 0.84748 0.93174 0.90498 0.92002 0.90802 0.93247 0.90370 0.87313 0.89755 0.84354 0.91159 0.92020 0.90294 0.91314 0.89717 0.97350 0.96427 0.94279 0.93244 0.95084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 71.98 0.71 -1.47 16 2 C -0.14 -2.86 5.75 30.59 0.18 -2.68 16 3 C 0.10 2.28 4.05 86.38 0.35 2.63 16 4 N -0.59 -17.73 2.52 -790.15 -1.99 -19.72 16 5 C 0.53 16.50 7.42 87.66 0.65 17.15 16 6 O -0.59 -24.04 15.67 -3.05 -0.05 -24.09 16 7 C -0.19 -3.87 4.51 -11.52 -0.05 -3.92 16 8 H 0.15 2.19 5.94 -2.39 -0.01 2.17 16 9 C -0.13 -2.10 9.88 30.59 0.30 -1.79 16 10 C -0.13 -2.45 5.92 -10.77 -0.06 -2.52 16 11 H 0.09 2.16 7.67 -2.39 -0.02 2.14 16 12 C -0.12 -1.41 10.19 71.98 0.73 -0.68 16 13 C 0.14 5.35 3.40 46.38 0.16 5.50 16 14 H 0.07 3.30 7.07 -2.39 -0.02 3.29 16 15 C -0.13 -5.25 6.52 31.78 0.21 -5.04 16 16 C 0.19 9.77 5.37 86.73 0.47 10.24 16 17 N -0.62 -33.23 3.40 -691.87 -2.35 -35.58 16 18 C -0.25 -14.13 10.28 84.03 0.86 -13.26 16 19 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 20 C -0.06 -3.70 5.49 84.86 0.47 -3.24 16 21 N -0.95 -58.20 10.31 21.65 0.22 -57.98 16 22 Si 0.98 46.46 29.55 68.60 2.03 48.48 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.13 5.73 6.06 86.84 0.53 6.26 16 27 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.28 6.76 -2.39 -0.02 1.26 16 31 H 0.05 1.26 6.11 -2.38 -0.01 1.24 16 32 H 0.08 1.87 6.43 -2.39 -0.02 1.86 16 33 H 0.11 1.67 6.97 -2.39 -0.02 1.65 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.14 1.25 8.05 -2.39 -0.02 1.23 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.64 7.90 -2.39 -0.02 0.62 16 39 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.08 2.91 6.86 -2.39 -0.02 2.89 16 41 H 0.01 0.48 7.38 -2.39 -0.02 0.46 16 42 H 0.02 0.98 7.50 -2.38 -0.02 0.97 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.05 1.93 5.20 -2.38 -0.01 1.92 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.36 348.61 4.31 -69.05 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.96 Total: 12.67 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.50 Total: 7.17 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.12 Total: -113.28 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -73.36 4.31 -69.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267546535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.318 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds