Wall clock time and date at job start Fri Apr 10 2020 17:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47116 * 2 1 4 4 N 1.46499 * 109.46843 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00655 * 273.11084 * 4 3 2 6 6 O 1.21271 * 120.00332 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99402 * 0.02562 * 5 4 3 8 8 H 1.09003 * 115.54801 * 325.71733 * 7 5 4 9 9 C 1.52996 * 117.50032 * 111.39205 * 7 5 4 10 10 C 1.52993 * 59.99970 * 107.48460 * 9 7 5 11 11 H 1.08998 * 117.49941 * 252.50799 * 10 9 7 12 12 C 1.53000 * 117.49791 * 107.49127 * 10 9 7 13 13 C 1.46506 * 119.99510 * 93.11287 * 4 3 2 14 14 H 1.09004 * 110.78038 * 230.47708 * 13 4 3 15 15 C 1.55158 * 110.71854 * 107.24257 * 13 4 3 16 16 C 1.54909 * 101.57872 * 277.13613 * 15 13 4 17 17 N 1.47420 * 104.83486 * 322.98850 * 16 15 13 18 18 C 1.36934 * 125.65173 * 204.16443 * 17 16 15 19 19 H 1.07995 * 120.00577 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99684 * 359.96297 * 18 17 16 21 21 N 1.31610 * 120.00575 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47356 * 89.99522 * 22 20 18 24 24 H 1.48500 * 109.47290 * 209.99698 * 22 20 18 25 25 H 1.48507 * 109.47070 * 329.99782 * 22 20 18 26 26 C 1.47023 * 108.69922 * 24.13142 * 17 16 15 27 27 H 1.09007 * 109.47101 * 60.00164 * 1 2 3 28 28 H 1.08999 * 109.47184 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47436 * 300.00420 * 1 2 3 30 30 H 1.08998 * 109.46794 * 239.99898 * 2 1 3 31 31 H 1.08997 * 109.46479 * 120.00225 * 2 1 3 32 32 H 1.09004 * 109.47040 * 59.99972 * 3 2 1 33 33 H 1.08996 * 109.47424 * 300.00031 * 3 2 1 34 34 H 1.08999 * 117.49755 * 214.98268 * 9 7 5 35 35 H 1.09003 * 117.49440 * 359.97234 * 9 7 5 36 36 H 1.08998 * 109.46907 * 351.37721 * 12 10 9 37 37 H 1.08997 * 109.46985 * 111.37723 * 12 10 9 38 38 H 1.09005 * 109.46933 * 231.37327 * 12 10 9 39 39 H 1.08998 * 111.00587 * 35.20978 * 15 13 4 40 40 H 1.09000 * 111.00161 * 159.06196 * 15 13 4 41 41 H 1.09008 * 110.36281 * 204.15134 * 16 15 13 42 42 H 1.08996 * 110.46092 * 81.88021 * 16 15 13 43 43 H 0.97002 * 120.00478 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.88216 * 239.51702 * 26 17 16 45 45 H 1.08998 * 109.88147 * 118.36064 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1785 1.3792 1.1663 6 8 5.3913 1.3787 1.1667 7 6 3.4245 1.3080 2.4692 8 1 2.4855 1.8608 2.4997 9 6 3.5000 -0.0004 3.2586 10 6 4.2461 1.2385 3.7580 11 1 5.3319 1.2441 3.6635 12 6 3.6870 1.9504 4.9915 13 6 4.2380 1.5111 -1.2661 14 1 4.9930 0.7266 -1.3190 15 6 4.8851 2.9091 -1.4507 16 6 3.6985 3.7288 -2.0162 17 7 2.9792 2.7921 -2.8985 18 6 2.1750 3.1436 -3.9496 19 1 1.6906 2.3787 -4.5383 20 6 1.9822 4.4831 -4.2583 21 7 2.5720 5.4154 -3.5405 22 14 0.8846 4.9627 -5.6917 23 1 -0.5112 5.1287 -5.2126 24 1 1.3630 6.2417 -6.2752 25 1 0.9294 3.8989 -6.7270 26 6 3.2689 1.4179 -2.4634 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 2.6108 -0.3083 3.8088 35 1 4.0948 -0.8099 2.8354 36 1 2.7154 1.5270 5.2461 37 1 4.3719 1.8178 5.8290 38 1 3.5755 3.0135 4.7780 39 1 5.2197 3.3140 -0.4956 40 1 5.7072 2.8678 -2.1652 41 1 4.0648 4.5822 -2.5869 42 1 3.0481 4.0645 -1.2085 43 1 2.4370 6.3515 -3.7559 44 1 3.7365 0.8625 -3.2764 45 1 2.3470 0.9240 -2.1566 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267546541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:15 Heat of formation + Delta-G solvation = 14.713727 kcal Electronic energy + Delta-G solvation = -23428.321050 eV Core-core repulsion = 20254.436448 eV Total energy + Delta-G solvation = -3173.884602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -40.22254 -37.97658 -36.33330 -35.31643 -32.93297 -31.69705 -29.32957 -28.78178 -27.48324 -26.11027 -24.59681 -23.60759 -21.68097 -21.00177 -20.16660 -19.82005 -18.29806 -17.08856 -16.88882 -16.45698 -15.23382 -14.76982 -14.62244 -14.31902 -13.96663 -13.69487 -13.44060 -13.31054 -13.00308 -12.60788 -12.55707 -12.27371 -12.07154 -11.69740 -11.57592 -11.52741 -11.40159 -11.26974 -10.99600 -10.89303 -10.65963 -10.61507 -10.27073 -10.15221 -10.08980 -10.05107 -9.90076 -9.61661 -9.33130 -8.66967 -8.18937 -6.86078 -5.66609 -3.09467 2.74699 3.26233 3.38060 3.43378 3.45436 3.83793 4.46711 4.52305 4.73536 4.76840 5.03379 5.13183 5.20256 5.23194 5.37099 5.43409 5.46887 5.55460 5.59581 5.60399 5.62435 5.67584 5.75567 5.86149 5.89596 5.93012 5.94732 6.00176 6.18872 6.19977 6.25838 6.34406 6.37369 6.49064 6.61142 6.71133 6.77182 7.10883 7.53584 7.61098 7.79675 7.86243 8.34700 8.52719 9.19697 9.80373 10.45266 11.36558 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.004846 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.797325 B = 5777.069653 C = 6221.065708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.100 3.900 4 N -0.586 5.586 5 C 0.542 3.458 6 O -0.548 6.548 7 C -0.185 4.185 8 H 0.122 0.878 9 C -0.149 4.149 10 C -0.126 4.126 11 H 0.115 0.885 12 C -0.122 4.122 13 C 0.134 3.866 14 H 0.077 0.923 15 C -0.151 4.151 16 C 0.155 3.845 17 N -0.601 5.601 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.123 3.877 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.010 0.990 43 H 0.252 0.748 44 H 0.032 0.968 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -9.825 13.147 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C -0.023 4.023 4 N -0.317 5.317 5 C 0.330 3.670 6 O -0.426 6.426 7 C -0.206 4.206 8 H 0.140 0.860 9 C -0.187 4.187 10 C -0.144 4.144 11 H 0.133 0.867 12 C -0.180 4.180 13 C 0.031 3.969 14 H 0.095 0.905 15 C -0.191 4.191 16 C 0.031 3.969 17 N -0.328 5.328 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.003 4.003 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.028 0.972 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.013 -9.623 12.993 16.200 hybrid contribution -0.742 0.303 -0.813 1.142 sum -1.755 -9.320 12.179 15.437 Atomic orbital electron populations 1.21685 0.95294 1.01466 1.02200 1.21982 0.96081 0.97423 1.02284 1.21809 0.79337 0.96744 1.04432 1.47862 1.06760 1.71484 1.05560 1.19541 0.87193 0.76028 0.84258 1.90649 1.13864 1.50850 1.87282 1.22361 1.02426 1.04406 0.91409 0.86012 1.23042 1.02701 0.90905 1.02024 1.22353 0.99388 0.99828 0.92852 0.86658 1.21388 1.00512 1.00329 0.95724 1.22013 0.93885 0.98564 0.82418 0.90520 1.23332 0.99723 0.95493 1.00513 1.21900 0.88987 0.93706 0.92323 1.44531 1.55288 0.99063 1.33922 1.19047 1.20051 0.91549 1.04642 0.90498 1.24778 1.00625 0.95601 0.99410 1.69819 1.46697 0.99545 1.40733 0.86100 0.79952 0.77788 0.81792 1.21658 1.21681 1.20707 1.21699 0.95947 0.89789 0.92849 0.92092 0.92840 0.92868 0.91493 0.92133 0.91232 0.87586 0.88095 0.88539 0.92486 0.91892 0.91929 0.91842 0.91477 0.87772 0.97161 0.93725 0.94999 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.14 -1.74 5.92 -26.73 -0.16 -1.90 16 3 C 0.10 1.51 4.44 -4.04 -0.02 1.49 16 4 N -0.59 -9.94 2.58 -164.03 -0.42 -10.37 16 5 C 0.54 9.13 7.10 -10.98 -0.08 9.05 16 6 O -0.55 -10.93 15.60 5.57 0.09 -10.84 16 7 C -0.19 -2.38 4.82 -91.77 -0.44 -2.82 16 8 H 0.12 1.43 6.48 -51.93 -0.34 1.10 16 9 C -0.15 -1.56 9.88 -26.74 -0.26 -1.82 16 10 C -0.13 -1.44 5.92 -90.63 -0.54 -1.97 16 11 H 0.12 1.51 7.67 -51.93 -0.40 1.11 16 12 C -0.12 -1.09 10.19 37.16 0.38 -0.72 16 13 C 0.13 2.55 3.15 -66.10 -0.21 2.34 16 14 H 0.08 1.43 8.08 -51.93 -0.42 1.01 16 15 C -0.15 -3.17 6.56 -24.58 -0.16 -3.34 16 16 C 0.16 3.82 5.87 -2.53 -0.01 3.80 16 17 N -0.60 -14.91 3.06 -170.08 -0.52 -15.44 16 18 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 22 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.12 2.51 6.01 -3.07 -0.02 2.49 16 27 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.90 7.08 -51.93 -0.37 0.53 16 31 H 0.06 0.70 7.95 -51.93 -0.41 0.29 16 32 H 0.07 0.95 6.13 -51.93 -0.32 0.63 16 33 H 0.11 1.95 5.90 -51.93 -0.31 1.65 16 34 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 1.35 7.36 -51.93 -0.38 0.96 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.10 2.90 5.88 -51.92 -0.31 2.60 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.75 4.52 -51.93 -0.23 0.51 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -30.34 350.15 -9.11 -39.45 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.66 Total: 2.42 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.40 Total: -1.21 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.38 Total: -51.78 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.34 -9.11 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267546541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.161 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds