Wall clock time and date at job start Fri Apr 10 2020 17:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47116 * 2 1 4 4 N 1.46499 * 109.46843 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00655 * 273.11084 * 4 3 2 6 6 O 1.21271 * 120.00332 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99402 * 0.02562 * 5 4 3 8 8 H 1.09003 * 115.54801 * 325.71733 * 7 5 4 9 9 C 1.52996 * 117.50032 * 111.39205 * 7 5 4 10 10 C 1.52993 * 59.99970 * 107.48460 * 9 7 5 11 11 H 1.08998 * 117.49941 * 252.50799 * 10 9 7 12 12 C 1.53000 * 117.49791 * 107.49127 * 10 9 7 13 13 C 1.46506 * 119.99510 * 93.11287 * 4 3 2 14 14 H 1.09004 * 110.78038 * 230.47708 * 13 4 3 15 15 C 1.55158 * 110.71854 * 107.24257 * 13 4 3 16 16 C 1.54909 * 101.57872 * 277.13613 * 15 13 4 17 17 N 1.47420 * 104.83486 * 322.98850 * 16 15 13 18 18 C 1.36934 * 125.65173 * 204.16443 * 17 16 15 19 19 H 1.07995 * 120.00577 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99684 * 359.96297 * 18 17 16 21 21 N 1.31610 * 120.00575 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47356 * 89.99522 * 22 20 18 24 24 H 1.48500 * 109.47290 * 209.99698 * 22 20 18 25 25 H 1.48507 * 109.47070 * 329.99782 * 22 20 18 26 26 C 1.47023 * 108.69922 * 24.13142 * 17 16 15 27 27 H 1.09007 * 109.47101 * 60.00164 * 1 2 3 28 28 H 1.08999 * 109.47184 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47436 * 300.00420 * 1 2 3 30 30 H 1.08998 * 109.46794 * 239.99898 * 2 1 3 31 31 H 1.08997 * 109.46479 * 120.00225 * 2 1 3 32 32 H 1.09004 * 109.47040 * 59.99972 * 3 2 1 33 33 H 1.08996 * 109.47424 * 300.00031 * 3 2 1 34 34 H 1.08999 * 117.49755 * 214.98268 * 9 7 5 35 35 H 1.09003 * 117.49440 * 359.97234 * 9 7 5 36 36 H 1.08998 * 109.46907 * 351.37721 * 12 10 9 37 37 H 1.08997 * 109.46985 * 111.37723 * 12 10 9 38 38 H 1.09005 * 109.46933 * 231.37327 * 12 10 9 39 39 H 1.08998 * 111.00587 * 35.20978 * 15 13 4 40 40 H 1.09000 * 111.00161 * 159.06196 * 15 13 4 41 41 H 1.09008 * 110.36281 * 204.15134 * 16 15 13 42 42 H 1.08996 * 110.46092 * 81.88021 * 16 15 13 43 43 H 0.97002 * 120.00478 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.88216 * 239.51702 * 26 17 16 45 45 H 1.08998 * 109.88147 * 118.36064 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1785 1.3792 1.1663 6 8 5.3913 1.3787 1.1667 7 6 3.4245 1.3080 2.4692 8 1 2.4855 1.8608 2.4997 9 6 3.5000 -0.0004 3.2586 10 6 4.2461 1.2385 3.7580 11 1 5.3319 1.2441 3.6635 12 6 3.6870 1.9504 4.9915 13 6 4.2380 1.5111 -1.2661 14 1 4.9930 0.7266 -1.3190 15 6 4.8851 2.9091 -1.4507 16 6 3.6985 3.7288 -2.0162 17 7 2.9792 2.7921 -2.8985 18 6 2.1750 3.1436 -3.9496 19 1 1.6906 2.3787 -4.5383 20 6 1.9822 4.4831 -4.2583 21 7 2.5720 5.4154 -3.5405 22 14 0.8846 4.9627 -5.6917 23 1 -0.5112 5.1287 -5.2126 24 1 1.3630 6.2417 -6.2752 25 1 0.9294 3.8989 -6.7270 26 6 3.2689 1.4179 -2.4634 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 2.6108 -0.3083 3.8088 35 1 4.0948 -0.8099 2.8354 36 1 2.7154 1.5270 5.2461 37 1 4.3719 1.8178 5.8290 38 1 3.5755 3.0135 4.7780 39 1 5.2197 3.3140 -0.4956 40 1 5.7072 2.8678 -2.1652 41 1 4.0648 4.5822 -2.5869 42 1 3.0481 4.0645 -1.2085 43 1 2.4370 6.3515 -3.7559 44 1 3.7365 0.8625 -3.2764 45 1 2.3470 0.9240 -2.1566 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267546541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:14 Heat of formation + Delta-G solvation = -1.454391 kcal Electronic energy + Delta-G solvation = -23429.022152 eV Core-core repulsion = 20254.436448 eV Total energy + Delta-G solvation = -3174.585704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56253 -39.40517 -37.53186 -36.76859 -34.55704 -33.25316 -31.09883 -29.82519 -29.04893 -27.42021 -26.27642 -24.94671 -22.74730 -22.16757 -21.88848 -21.15527 -19.60739 -18.95100 -18.26318 -17.87805 -16.88840 -16.35501 -15.91479 -15.59065 -15.53252 -14.86086 -14.83630 -14.30335 -14.18879 -14.05670 -13.85882 -13.65484 -13.47456 -13.02027 -12.93674 -12.92183 -12.68943 -12.63503 -12.47749 -12.30213 -12.14266 -12.02018 -11.92683 -11.79228 -11.62732 -11.52203 -11.19948 -10.94948 -10.73909 -10.69055 -9.60548 -8.89967 -7.76373 -5.21378 1.48392 1.49804 1.50904 1.58595 1.96357 2.50144 2.88058 3.34955 3.40744 3.67028 3.78515 3.81713 3.88995 3.99111 4.01192 4.17733 4.21634 4.26412 4.42719 4.44310 4.56962 4.59755 4.66083 4.74059 4.81595 4.88036 4.90191 4.96021 4.98131 5.03583 5.04200 5.08465 5.21898 5.23433 5.29200 5.43071 5.44838 5.49074 5.56645 5.67014 5.77649 6.27537 6.47757 7.09454 7.19587 7.76405 8.41187 9.25823 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.004846 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.797325 B = 5777.069653 C = 6221.065708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.102 3.898 4 N -0.589 5.589 5 C 0.536 3.464 6 O -0.586 6.586 7 C -0.199 4.199 8 H 0.136 0.864 9 C -0.125 4.125 10 C -0.129 4.129 11 H 0.092 0.908 12 C -0.118 4.118 13 C 0.144 3.856 14 H 0.086 0.914 15 C -0.139 4.139 16 C 0.169 3.831 17 N -0.616 5.616 18 C -0.234 4.234 19 H 0.085 0.915 20 C -0.064 4.064 21 N -0.950 5.950 22 Si 0.979 3.021 23 H -0.286 1.286 24 H -0.298 1.298 25 H -0.269 1.269 26 C 0.125 3.875 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.069 0.931 42 H -0.013 1.013 43 H 0.246 0.754 44 H 0.038 0.962 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -11.761 14.429 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C -0.020 4.020 4 N -0.319 5.319 5 C 0.326 3.674 6 O -0.467 6.467 7 C -0.220 4.220 8 H 0.154 0.846 9 C -0.162 4.162 10 C -0.147 4.147 11 H 0.110 0.890 12 C -0.175 4.175 13 C 0.040 3.960 14 H 0.104 0.896 15 C -0.179 4.179 16 C 0.044 3.956 17 N -0.343 5.343 18 C -0.363 4.363 19 H 0.103 0.897 20 C -0.257 4.257 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.212 1.212 24 H -0.224 1.224 25 H -0.193 1.193 26 C 0.000 4.000 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.005 0.995 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.555 -11.599 14.283 18.576 hybrid contribution -0.229 0.885 -1.186 1.498 sum -2.784 -10.714 13.096 17.148 Atomic orbital electron populations 1.21663 0.93927 1.02596 1.02053 1.21891 0.97097 0.95204 1.02566 1.21855 0.78079 0.98566 1.03497 1.47942 1.07521 1.71444 1.04993 1.20257 0.87015 0.74804 0.85286 1.90627 1.15632 1.52553 1.87889 1.22340 1.02830 1.07190 0.89619 0.84604 1.23175 1.03303 0.89551 1.00183 1.22416 0.98273 1.01045 0.93015 0.88978 1.21391 1.01651 0.99731 0.94713 1.21799 0.93740 0.97171 0.83268 0.89633 1.23150 0.98411 0.96409 0.99941 1.21532 0.89604 0.93334 0.91131 1.44700 1.55086 1.00848 1.33619 1.19438 1.19922 0.91921 1.05013 0.89680 1.25597 1.02337 0.95679 1.02040 1.70068 1.48206 0.99394 1.42342 0.85066 0.78042 0.77155 0.78969 1.21246 1.22425 1.19349 1.21799 0.96982 0.87717 0.93466 0.93826 0.91053 0.91473 0.92560 0.90420 0.89572 0.91089 0.84804 0.89145 0.90545 0.90807 0.92516 0.92304 0.91329 0.91286 0.99527 0.94450 0.94460 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.91 71.98 0.71 -2.08 16 2 C -0.13 -2.93 5.92 30.59 0.18 -2.74 16 3 C 0.10 2.98 4.44 86.38 0.38 3.37 16 4 N -0.59 -19.64 2.58 -791.26 -2.04 -21.68 16 5 C 0.54 17.69 7.10 87.66 0.62 18.32 16 6 O -0.59 -23.45 15.60 -3.00 -0.05 -23.50 16 7 C -0.20 -4.70 4.82 -11.54 -0.06 -4.76 16 8 H 0.14 2.82 6.48 -2.39 -0.02 2.80 16 9 C -0.12 -2.20 9.88 30.59 0.30 -1.90 16 10 C -0.13 -2.70 5.92 -10.80 -0.06 -2.76 16 11 H 0.09 2.38 7.67 -2.39 -0.02 2.36 16 12 C -0.12 -1.78 10.19 71.98 0.73 -1.05 16 13 C 0.14 5.46 3.15 46.18 0.15 5.61 16 14 H 0.09 3.13 8.08 -2.39 -0.02 3.11 16 15 C -0.14 -6.01 6.56 31.99 0.21 -5.80 16 16 C 0.17 8.64 5.87 86.86 0.51 9.15 16 17 N -0.62 -31.08 3.06 -692.02 -2.12 -33.20 16 18 C -0.23 -12.76 10.27 84.03 0.86 -11.90 16 19 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 21 N -0.95 -56.62 10.09 21.65 0.22 -56.40 16 22 Si 0.98 44.99 29.55 68.60 2.03 47.02 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C 0.13 5.08 6.01 86.73 0.52 5.61 16 27 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.40 7.08 -2.39 -0.02 1.38 16 31 H 0.08 1.52 7.95 -2.39 -0.02 1.51 16 32 H 0.09 2.20 6.13 -2.39 -0.01 2.19 16 33 H 0.07 2.61 5.90 -2.39 -0.01 2.60 16 34 H 0.13 1.52 8.05 -2.39 -0.02 1.50 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 0.87 7.90 -2.39 -0.02 0.85 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.06 2.57 7.36 -2.39 -0.02 2.55 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.07 4.05 5.88 -2.38 -0.01 4.03 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.06 2.10 4.52 -2.39 -0.01 2.09 16 Total: -1.00 -67.40 350.15 4.52 -62.88 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.95 Total: 18.94 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.53 Total: 5.94 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -3.94 Total: -111.28 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -67.40 4.52 -62.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267546541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.426 kcal (2) G-P(sol) polarization free energy of solvation -67.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds