Wall clock time and date at job start Fri Apr 10 2020 17:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46923 * 2 1 4 4 N 1.46898 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.48630 * 111.00158 * 52.55775 * 4 3 2 6 6 C 1.55160 * 103.35860 * 159.15428 * 5 4 3 7 7 C 1.53600 * 102.66305 * 323.41602 * 6 5 4 8 8 C 1.53614 * 110.85691 * 142.27439 * 7 6 5 9 9 C 1.54702 * 101.51229 * 96.89357 * 8 7 6 10 10 N 1.46885 * 105.52164 * 24.53436 * 9 8 7 11 11 C 1.46498 * 124.37556 * 163.20778 * 10 9 8 12 12 C 1.52999 * 109.46850 * 90.00250 * 11 10 9 13 13 C 1.50701 * 109.46836 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00365 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99872 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99879 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99827 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47238 * 90.00421 * 17 15 13 19 19 H 1.48504 * 109.46676 * 209.99946 * 17 15 13 20 20 H 1.48497 * 109.47335 * 329.99673 * 17 15 13 21 21 C 1.34751 * 111.25220 * 343.17588 * 10 9 8 22 22 O 1.21283 * 125.13216 * 180.97802 * 21 10 9 23 23 C 1.48192 * 110.99888 * 169.99837 * 4 3 2 24 24 H 1.08996 * 109.46589 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47137 * 299.99939 * 1 2 3 26 26 H 1.08994 * 109.47309 * 60.00212 * 1 2 3 27 27 H 1.08999 * 109.47137 * 240.00061 * 2 1 3 28 28 H 1.08995 * 109.46820 * 119.99593 * 2 1 3 29 29 H 1.08999 * 109.47164 * 60.00078 * 3 2 1 30 30 H 1.09003 * 109.46724 * 300.00021 * 3 2 1 31 31 H 1.09002 * 110.64295 * 40.67911 * 5 4 3 32 32 H 1.09006 * 110.78019 * 277.68554 * 5 4 3 33 33 H 1.09000 * 110.77084 * 205.12569 * 6 5 4 34 34 H 1.09000 * 110.93729 * 81.78572 * 6 5 4 35 35 H 1.08992 * 111.02353 * 214.95346 * 8 7 6 36 36 H 1.09003 * 111.01834 * 338.84147 * 8 7 6 37 37 H 1.09001 * 110.23958 * 143.54299 * 9 8 7 38 38 H 1.08997 * 110.24306 * 265.52369 * 9 8 7 39 39 H 1.08995 * 109.47250 * 210.00520 * 11 10 9 40 40 H 1.09000 * 109.46813 * 330.00530 * 11 10 9 41 41 H 1.08992 * 109.47191 * 299.99698 * 12 11 10 42 42 H 1.08995 * 109.47072 * 60.00048 * 12 11 10 43 43 H 0.97001 * 119.99976 * 179.97438 * 16 15 13 44 44 H 1.08995 * 110.01817 * 95.03248 * 23 4 3 45 45 H 1.09005 * 110.01838 * 333.63726 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0412 0.5991 -1.1027 6 6 5.4867 1.1296 -1.2941 7 6 5.3268 2.6378 -1.0515 8 6 6.5382 3.2013 -0.2934 9 6 7.3938 3.7637 -1.4530 10 7 6.4476 4.0381 -2.5425 11 6 6.7395 4.8931 -3.6957 12 6 7.3404 4.0462 -4.8193 13 6 7.6412 4.9258 -6.0054 14 1 7.4249 5.9831 -5.9624 15 6 8.1915 4.3807 -7.1460 16 7 8.4535 5.1482 -8.1813 17 14 8.5649 2.5519 -7.2208 18 1 7.3802 1.8258 -7.7446 19 1 9.7247 2.3199 -8.1189 20 1 8.8869 2.0563 -5.8585 21 6 5.2767 3.4013 -2.3445 22 8 4.3258 3.4392 -3.0963 23 6 4.0400 2.8050 -0.2409 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.4564 0.7405 -2.0116 32 1 4.0527 -0.4520 -0.8142 33 1 5.8384 0.9362 -2.3075 34 1 6.1632 0.6898 -0.5613 35 1 6.2369 3.9947 0.3906 36 1 7.0696 2.4111 0.2370 37 1 7.8899 4.6837 -1.1439 38 1 8.1304 3.0257 -1.7705 39 1 5.8181 5.3591 -4.0450 40 1 7.4499 5.6666 -3.4040 41 1 8.2618 3.5803 -4.4701 42 1 6.6301 3.2727 -5.1110 43 1 8.8410 4.7648 -8.9836 44 1 4.2580 3.2934 0.7088 45 1 3.3167 3.3931 -0.8060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272452111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:50 Heat of formation + Delta-G solvation = -38.992819 kcal Electronic energy + Delta-G solvation = -22770.349491 eV Core-core repulsion = 19594.135999 eV Total energy + Delta-G solvation = -3176.213492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 3.25 seconds Orbital eigenvalues (eV) -41.04372 -38.25685 -36.17368 -34.95323 -33.43295 -32.05967 -30.39011 -29.49042 -28.13097 -25.99286 -25.05332 -23.19829 -22.49587 -21.64537 -20.58705 -20.21831 -18.63831 -17.02606 -16.38620 -15.98651 -15.68210 -15.42428 -15.15505 -14.58391 -14.23733 -14.04261 -13.86918 -13.40298 -13.31220 -12.95586 -12.78254 -12.63036 -12.49520 -12.21554 -12.11261 -12.01758 -11.58723 -11.47724 -11.44506 -11.24504 -11.04155 -10.93094 -10.77096 -10.64940 -10.42259 -10.13698 -9.85162 -9.39799 -9.21949 -8.57799 -8.56600 -8.19809 -6.08737 -4.07815 2.85007 3.29393 3.35957 3.37961 3.39085 3.84717 4.24226 4.34182 4.42061 4.43100 4.76097 4.81348 4.83589 5.00712 5.09686 5.21068 5.25391 5.25836 5.35048 5.43078 5.48110 5.51742 5.58024 5.61744 5.69390 5.73083 5.79583 5.79898 5.85975 5.88243 5.97240 5.99985 6.02442 6.04444 6.28185 6.56709 6.67958 6.79854 6.88622 7.15949 7.29098 7.59308 7.72573 8.44609 8.53658 8.94179 9.53167 11.04378 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.004010 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.600545 B = 6981.684230 C = 7425.341649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.044 3.956 4 N -0.514 5.514 5 C 0.035 3.965 6 C -0.100 4.100 7 C -0.108 4.108 8 C -0.117 4.117 9 C 0.099 3.901 10 N -0.613 5.613 11 C 0.136 3.864 12 C -0.024 4.024 13 C -0.522 4.522 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.901 5.901 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.267 1.267 21 C 0.523 3.477 22 O -0.528 6.528 23 C 0.058 3.942 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.017 0.983 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.086 0.914 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 -9.147 21.130 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.085 4.085 4 N -0.238 5.238 5 C -0.093 4.093 6 C -0.138 4.138 7 C -0.112 4.112 8 C -0.155 4.155 9 C -0.024 4.024 10 N -0.346 5.346 11 C 0.016 3.984 12 C -0.062 4.062 13 C -0.560 4.560 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.539 5.539 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.192 1.192 21 C 0.309 3.691 22 O -0.405 6.405 23 C -0.070 4.070 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.263 -9.239 20.980 24.368 hybrid contribution 0.081 -0.539 -1.099 1.227 sum -8.182 -9.778 19.881 23.618 Atomic orbital electron populations 1.21737 0.95599 1.01706 1.01877 1.21585 0.95669 0.96346 1.02579 1.22371 0.87652 0.97312 1.01119 1.64985 1.07828 1.08048 1.42967 1.23293 0.94650 0.98102 0.93214 1.22353 0.97386 0.91390 1.02688 1.21545 0.97197 0.97305 0.95166 1.22674 0.94852 1.01203 0.96738 1.22130 0.92485 1.01212 0.86592 1.48671 1.13954 1.48336 1.23662 1.21597 1.00905 0.92044 0.83817 1.19885 0.95705 0.96480 0.94135 1.20962 1.41772 0.96366 0.96925 0.90792 1.24975 0.94917 0.97879 0.95398 1.69904 1.43953 1.35625 1.04434 0.86764 0.78143 0.86078 0.78211 1.20220 1.21268 1.19183 1.20255 0.82664 0.79296 0.86866 1.90699 1.35918 1.63078 1.50786 1.22713 0.94196 0.91211 0.98877 0.92589 0.92683 0.92722 0.91849 0.91240 0.90730 0.94273 0.93001 0.89787 0.90607 0.89572 0.89912 0.89033 0.90318 0.91131 0.90625 0.90902 0.96481 0.96677 0.92618 0.89620 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.09 5.60 -26.72 -0.15 -1.24 16 3 C 0.04 0.45 5.03 -3.82 -0.02 0.43 16 4 N -0.51 -5.84 5.41 -230.60 -1.25 -7.08 16 5 C 0.04 0.41 5.11 -1.72 -0.01 0.40 16 6 C -0.10 -1.19 6.22 -25.28 -0.16 -1.35 16 7 C -0.11 -1.39 0.77 -155.25 -0.12 -1.51 16 8 C -0.12 -1.16 6.19 -25.52 -0.16 -1.32 16 9 C 0.10 1.23 7.37 -2.94 -0.02 1.21 16 10 N -0.61 -10.60 2.94 -172.53 -0.51 -11.11 16 11 C 0.14 2.79 5.88 -4.04 -0.02 2.77 16 12 C -0.02 -0.58 4.37 -27.88 -0.12 -0.70 16 13 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 17 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 21 C 0.52 9.31 6.61 -11.22 -0.07 9.24 16 22 O -0.53 -11.61 17.15 5.56 0.10 -11.52 16 23 C 0.06 0.70 6.02 -3.11 -0.02 0.69 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.59 6.79 -51.93 -0.35 0.24 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.46 7.82 -51.93 -0.41 0.06 16 31 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 32 H 0.08 0.83 7.70 -51.93 -0.40 0.43 16 33 H 0.08 1.03 7.85 -51.93 -0.41 0.63 16 34 H 0.09 0.84 7.46 -51.93 -0.39 0.45 16 35 H 0.08 0.71 7.59 -51.93 -0.39 0.32 16 36 H 0.09 0.72 7.45 -51.93 -0.39 0.34 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.66 7.95 -51.93 -0.41 1.25 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 42 H 0.01 0.39 7.57 -51.93 -0.39 0.00 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.09 0.88 7.40 -51.93 -0.38 0.49 16 45 H 0.06 0.80 6.87 -51.93 -0.36 0.44 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -33.40 350.92 -9.24 -42.64 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -8.04 Total: -3.01 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.93 Total: -5.56 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.98 Total: -45.37 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.10 Total: -11.52 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.40 -9.24 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272452111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.643 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds