Wall clock time and date at job start Fri Apr 10 2020 17:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46923 * 2 1 4 4 N 1.46898 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.48630 * 111.00158 * 52.55775 * 4 3 2 6 6 C 1.55160 * 103.35860 * 159.15428 * 5 4 3 7 7 C 1.53600 * 102.66305 * 323.41602 * 6 5 4 8 8 C 1.53614 * 110.85691 * 142.27439 * 7 6 5 9 9 C 1.54702 * 101.51229 * 96.89357 * 8 7 6 10 10 N 1.46885 * 105.52164 * 24.53436 * 9 8 7 11 11 C 1.46498 * 124.37556 * 163.20778 * 10 9 8 12 12 C 1.52999 * 109.46850 * 90.00250 * 11 10 9 13 13 C 1.50701 * 109.46836 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00365 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99872 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99879 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99827 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47238 * 90.00421 * 17 15 13 19 19 H 1.48504 * 109.46676 * 209.99946 * 17 15 13 20 20 H 1.48497 * 109.47335 * 329.99673 * 17 15 13 21 21 C 1.34751 * 111.25220 * 343.17588 * 10 9 8 22 22 O 1.21283 * 125.13216 * 180.97802 * 21 10 9 23 23 C 1.48192 * 110.99888 * 169.99837 * 4 3 2 24 24 H 1.08996 * 109.46589 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47137 * 299.99939 * 1 2 3 26 26 H 1.08994 * 109.47309 * 60.00212 * 1 2 3 27 27 H 1.08999 * 109.47137 * 240.00061 * 2 1 3 28 28 H 1.08995 * 109.46820 * 119.99593 * 2 1 3 29 29 H 1.08999 * 109.47164 * 60.00078 * 3 2 1 30 30 H 1.09003 * 109.46724 * 300.00021 * 3 2 1 31 31 H 1.09002 * 110.64295 * 40.67911 * 5 4 3 32 32 H 1.09006 * 110.78019 * 277.68554 * 5 4 3 33 33 H 1.09000 * 110.77084 * 205.12569 * 6 5 4 34 34 H 1.09000 * 110.93729 * 81.78572 * 6 5 4 35 35 H 1.08992 * 111.02353 * 214.95346 * 8 7 6 36 36 H 1.09003 * 111.01834 * 338.84147 * 8 7 6 37 37 H 1.09001 * 110.23958 * 143.54299 * 9 8 7 38 38 H 1.08997 * 110.24306 * 265.52369 * 9 8 7 39 39 H 1.08995 * 109.47250 * 210.00520 * 11 10 9 40 40 H 1.09000 * 109.46813 * 330.00530 * 11 10 9 41 41 H 1.08992 * 109.47191 * 299.99698 * 12 11 10 42 42 H 1.08995 * 109.47072 * 60.00048 * 12 11 10 43 43 H 0.97001 * 119.99976 * 179.97438 * 16 15 13 44 44 H 1.08995 * 110.01817 * 95.03248 * 23 4 3 45 45 H 1.09005 * 110.01838 * 333.63726 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0412 0.5991 -1.1027 6 6 5.4867 1.1296 -1.2941 7 6 5.3268 2.6378 -1.0515 8 6 6.5382 3.2013 -0.2934 9 6 7.3938 3.7637 -1.4530 10 7 6.4476 4.0381 -2.5425 11 6 6.7395 4.8931 -3.6957 12 6 7.3404 4.0462 -4.8193 13 6 7.6412 4.9258 -6.0054 14 1 7.4249 5.9831 -5.9624 15 6 8.1915 4.3807 -7.1460 16 7 8.4535 5.1482 -8.1813 17 14 8.5649 2.5519 -7.2208 18 1 7.3802 1.8258 -7.7446 19 1 9.7247 2.3199 -8.1189 20 1 8.8869 2.0563 -5.8585 21 6 5.2767 3.4013 -2.3445 22 8 4.3258 3.4392 -3.0963 23 6 4.0400 2.8050 -0.2409 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.4564 0.7405 -2.0116 32 1 4.0527 -0.4520 -0.8142 33 1 5.8384 0.9362 -2.3075 34 1 6.1632 0.6898 -0.5613 35 1 6.2369 3.9947 0.3906 36 1 7.0696 2.4111 0.2370 37 1 7.8899 4.6837 -1.1439 38 1 8.1304 3.0257 -1.7705 39 1 5.8181 5.3591 -4.0450 40 1 7.4499 5.6666 -3.4040 41 1 8.2618 3.5803 -4.4701 42 1 6.6301 3.2727 -5.1110 43 1 8.8410 4.7648 -8.9836 44 1 4.2580 3.2934 0.7088 45 1 3.3167 3.3931 -0.8060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272452111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:48 Heat of formation + Delta-G solvation = -62.029952 kcal Electronic energy + Delta-G solvation = -22771.348456 eV Core-core repulsion = 19594.135999 eV Total energy + Delta-G solvation = -3177.212457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 5.66 seconds Orbital eigenvalues (eV) -42.19478 -39.33314 -37.57633 -36.19606 -35.08778 -33.58988 -31.66969 -30.71186 -29.19330 -27.31251 -26.42143 -24.20246 -23.36138 -23.27786 -21.65844 -21.41951 -19.91416 -19.11150 -17.50681 -17.13081 -16.98246 -16.62697 -16.18516 -16.05619 -15.75766 -15.01075 -14.97603 -14.84889 -14.70344 -14.43671 -14.20813 -13.82264 -13.52333 -13.36056 -13.17496 -13.00713 -12.92821 -12.78764 -12.48584 -12.32447 -12.28787 -12.08088 -12.04634 -11.82797 -11.66493 -11.58559 -11.54937 -11.46270 -10.85910 -10.68072 -9.64596 -9.52133 -8.37503 -6.42710 1.28268 1.30128 1.41246 1.49439 2.06095 2.28352 2.91496 2.97367 3.27955 3.35205 3.51365 3.90378 3.99590 4.03339 4.10844 4.23062 4.26008 4.33906 4.42150 4.48351 4.49772 4.55197 4.65164 4.70065 4.72584 4.75528 4.80542 4.83035 4.90613 4.93994 5.03878 5.07261 5.11926 5.15830 5.18655 5.25572 5.27006 5.36544 5.44583 5.69956 5.76124 5.97885 6.15907 6.22437 6.63563 7.13652 7.22714 8.78864 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.004010 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.600545 B = 6981.684230 C = 7425.341649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.042 3.958 4 N -0.505 5.505 5 C 0.035 3.965 6 C -0.098 4.098 7 C -0.103 4.103 8 C -0.100 4.100 9 C 0.089 3.911 10 N -0.618 5.618 11 C 0.146 3.854 12 C -0.012 4.012 13 C -0.535 4.535 14 H 0.040 0.960 15 C 0.011 3.989 16 N -0.944 5.944 17 Si 0.948 3.052 18 H -0.278 1.278 19 H -0.274 1.274 20 H -0.246 1.246 21 C 0.508 3.492 22 O -0.586 6.586 23 C 0.060 3.940 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.014 0.986 31 H 0.020 0.980 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.031 0.969 42 H -0.005 1.005 43 H 0.269 0.731 44 H 0.114 0.886 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 -11.352 24.587 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.086 4.086 4 N -0.228 5.228 5 C -0.093 4.093 6 C -0.136 4.136 7 C -0.107 4.107 8 C -0.137 4.137 9 C -0.032 4.032 10 N -0.350 5.350 11 C 0.024 3.976 12 C -0.051 4.051 13 C -0.573 4.573 14 H 0.058 0.942 15 C -0.187 4.187 16 N -0.585 5.585 17 Si 0.771 3.229 18 H -0.204 1.204 19 H -0.199 1.199 20 H -0.170 1.170 21 C 0.297 3.703 22 O -0.466 6.466 23 C -0.069 4.069 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.032 0.968 31 H 0.038 0.962 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.049 0.951 42 H 0.013 0.987 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.989 -11.443 24.487 27.918 hybrid contribution -0.360 0.251 -2.219 2.262 sum -7.349 -11.192 22.268 25.983 Atomic orbital electron populations 1.21729 0.94786 1.02409 1.01839 1.21549 0.96378 0.95093 1.02630 1.22435 0.87241 0.98389 1.00508 1.65091 1.08229 1.07409 1.42088 1.23316 0.94320 0.99460 0.92188 1.22433 0.97947 0.90727 1.02485 1.21563 0.99176 0.97274 0.92678 1.22767 0.92629 1.02597 0.95727 1.22531 0.92137 1.02781 0.85797 1.48764 1.15121 1.47429 1.23663 1.21183 0.99700 0.92277 0.84409 1.19724 0.95777 0.95656 0.93926 1.21283 1.41503 0.95614 0.98901 0.94185 1.25926 0.94742 1.03136 0.94914 1.70039 1.45104 1.38021 1.05289 0.85700 0.78132 0.79611 0.79438 1.20386 1.19895 1.16978 1.21262 0.81861 0.79039 0.88179 1.90657 1.37939 1.64942 1.53094 1.22771 0.93148 0.91488 0.99467 0.91514 0.91773 0.93739 0.92664 0.90157 0.89440 0.96790 0.96198 0.87585 0.92823 0.85988 0.87839 0.85476 0.88148 0.90388 0.93419 0.88968 0.95117 0.98707 0.92224 0.86807 0.95624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.12 -1.93 5.60 30.60 0.17 -1.76 16 3 C 0.04 0.85 5.03 86.31 0.43 1.28 16 4 N -0.50 -10.49 5.41 -883.49 -4.78 -15.27 16 5 C 0.03 0.77 5.11 86.71 0.44 1.21 16 6 C -0.10 -2.10 6.22 31.54 0.20 -1.90 16 7 C -0.10 -2.43 0.77 -52.66 -0.04 -2.47 16 8 C -0.10 -1.51 6.19 31.38 0.19 -1.32 16 9 C 0.09 1.90 7.37 86.89 0.64 2.54 16 10 N -0.62 -20.85 2.94 -818.15 -2.41 -23.25 16 11 C 0.15 6.08 5.88 86.38 0.51 6.58 16 12 C -0.01 -0.62 4.37 29.85 0.13 -0.49 16 13 C -0.53 -31.71 9.66 25.60 0.25 -31.46 16 14 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 15 C 0.01 0.63 5.47 84.66 0.46 1.10 16 16 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 17 Si 0.95 45.81 27.47 68.60 1.88 47.69 16 18 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 21 C 0.51 18.21 6.61 87.52 0.58 18.79 16 22 O -0.59 -27.23 17.15 -3.04 -0.05 -27.28 16 23 C 0.06 1.34 6.02 86.05 0.52 1.86 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.98 6.79 -2.39 -0.02 0.97 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.01 0.35 7.82 -2.39 -0.02 0.33 16 31 H 0.02 0.56 7.98 -2.39 -0.02 0.54 16 32 H 0.11 1.86 7.70 -2.38 -0.02 1.84 16 33 H 0.05 1.40 7.85 -2.39 -0.02 1.38 16 34 H 0.12 1.77 7.46 -2.39 -0.02 1.75 16 35 H 0.10 1.21 7.59 -2.39 -0.02 1.19 16 36 H 0.13 1.14 7.45 -2.39 -0.02 1.13 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 2.22 7.95 -2.39 -0.02 2.20 16 40 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 42 H -0.01 -0.29 7.57 -2.39 -0.02 -0.31 16 43 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.11 1.92 7.40 -2.39 -0.02 1.90 16 45 H 0.03 0.74 6.87 -2.38 -0.02 0.72 16 Total: -1.00 -77.05 350.92 1.02 -76.03 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.88 Total: 9.29 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.20 Total: -7.44 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -6.89 Total: -98.29 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.69 kcal Total: -77.05 1.02 -76.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272452111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.000 kcal (2) G-P(sol) polarization free energy of solvation -77.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.67 seconds