Wall clock time and date at job start Fri Apr 10 2020 17:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00018 * 2 1 4 4 H 1.08999 * 109.47333 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47233 * 119.99885 * 3 2 1 6 6 C 1.52996 * 109.46850 * 185.83486 * 5 3 2 7 7 C 1.53003 * 109.47093 * 239.99796 * 3 2 1 8 8 C 1.50704 * 109.47168 * 65.36001 * 7 3 2 9 9 O 1.21276 * 120.00062 * 5.87043 * 8 7 3 10 10 N 1.34773 * 119.99836 * 185.87203 * 8 7 3 11 11 C 1.46503 * 119.99898 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47500 * 175.16531 * 11 10 8 13 13 N 1.46501 * 112.84827 * 288.03854 * 12 11 10 14 14 C 1.36934 * 119.99840 * 301.30053 * 13 12 11 15 15 H 1.07996 * 120.00054 * 4.85475 * 14 13 12 16 16 C 1.38814 * 119.99862 * 184.85266 * 14 13 12 17 17 N 1.31614 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99738 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46849 * 90.00555 * 18 16 14 20 20 H 1.48501 * 109.46859 * 210.00273 * 18 16 14 21 21 H 1.48497 * 109.47518 * 330.00309 * 18 16 14 22 22 C 1.53776 * 113.62065 * 156.72971 * 12 11 10 23 23 C 1.53779 * 87.08499 * 220.02062 * 22 12 11 24 24 C 1.53778 * 87.07880 * 25.42884 * 23 22 12 25 25 H 1.07993 * 120.00043 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.99764 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00063 * 180.27237 * 2 1 3 28 28 H 1.08993 * 109.46952 * 305.83234 * 5 3 2 29 29 H 1.09002 * 109.46937 * 65.83383 * 5 3 2 30 30 H 1.09000 * 109.47718 * 303.86225 * 6 5 3 31 31 H 1.08995 * 109.47393 * 63.86755 * 6 5 3 32 32 H 1.09001 * 109.46872 * 183.86765 * 6 5 3 33 33 H 1.09002 * 109.47443 * 185.36277 * 7 3 2 34 34 H 1.09005 * 109.47057 * 305.36150 * 7 3 2 35 35 H 0.97001 * 120.00224 * 359.97438 * 10 8 7 36 36 H 1.09007 * 109.47064 * 295.16316 * 11 10 8 37 37 H 1.08995 * 109.47203 * 55.15828 * 11 10 8 38 38 H 0.97005 * 120.00304 * 121.29516 * 13 12 11 39 39 H 0.97001 * 120.00250 * 179.97438 * 17 16 14 40 40 H 1.09004 * 113.60979 * 334.56987 * 22 12 11 41 41 H 1.09000 * 113.61178 * 105.46332 * 22 12 11 42 42 H 1.09000 * 113.60980 * 270.88389 * 23 22 12 43 43 H 1.08997 * 113.61421 * 139.98001 * 23 22 12 44 44 H 1.09009 * 113.61665 * 220.01656 * 24 23 22 45 45 H 1.09007 * 113.61139 * 89.12254 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 3.5956 2.7680 1.3246 7 6 2.9432 1.3861 -1.2492 8 6 2.0697 1.4389 -2.4762 9 8 0.8653 1.5216 -2.3600 10 7 2.6269 1.3941 -3.7025 11 6 1.7778 1.4460 -4.8952 12 6 2.6576 1.5008 -6.1457 13 7 3.3265 2.7932 -6.3145 14 6 2.5848 3.9398 -6.4167 15 1 1.5124 3.9018 -6.2946 16 6 3.2113 5.1508 -6.6772 17 7 4.5181 5.1969 -6.8265 18 14 2.1993 6.7147 -6.8173 19 1 2.0796 7.3482 -5.4796 20 1 2.8682 7.6549 -7.7522 21 1 0.8460 6.3843 -7.3316 22 6 1.9532 0.9990 -7.4172 23 6 3.2823 0.3222 -7.7919 24 6 3.6019 0.2954 -6.2879 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0044 28 1 2.3303 1.2249 2.1361 29 1 3.7176 0.6208 1.1986 30 1 4.1528 2.9573 0.4072 31 1 2.8238 3.5282 1.4444 32 1 4.2752 2.8028 2.1761 33 1 3.5588 2.2844 -1.2026 34 1 3.5861 0.5072 -1.2985 35 1 3.5902 1.3283 -3.7954 36 1 1.1487 0.5565 -4.9324 37 1 1.1482 2.3348 -4.8547 38 1 4.2947 2.8369 -6.3538 39 1 4.9559 6.0431 -7.0089 40 1 1.1451 0.2947 -7.2195 41 1 1.6624 1.7978 -8.0994 42 1 3.9503 0.9616 -8.3689 43 1 3.1596 -0.6683 -8.2299 44 1 4.6423 0.5262 -6.0584 45 1 3.2446 -0.6013 -5.7815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273140530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:23 Heat of formation + Delta-G solvation = -4.365370 kcal Electronic energy + Delta-G solvation = -22569.809155 eV Core-core repulsion = 19395.097222 eV Total energy + Delta-G solvation = -3174.711933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.65977 -38.60679 -36.54176 -33.78265 -33.26580 -32.21024 -30.22971 -29.66995 -27.06794 -25.27393 -24.98030 -23.76609 -21.77123 -21.04902 -20.12179 -19.40956 -18.20964 -17.20830 -16.83086 -15.59417 -15.37034 -15.15626 -14.64212 -14.39359 -14.20811 -13.90300 -13.75680 -13.39970 -13.15428 -12.78424 -12.69377 -12.36444 -12.03038 -11.83504 -11.70142 -11.54074 -11.26674 -11.04190 -11.02990 -10.84783 -10.67460 -10.44896 -10.37909 -10.19924 -10.05841 -9.67489 -9.51466 -9.43211 -9.06267 -8.85572 -8.41098 -7.03172 -5.82189 -3.11453 2.49895 3.14922 3.41962 3.48132 3.49117 3.71161 4.54389 4.74056 4.84044 4.95111 5.18517 5.23639 5.26561 5.28359 5.32331 5.41912 5.46520 5.48841 5.52457 5.57363 5.68280 5.77663 5.85268 5.87872 5.98917 6.06190 6.09265 6.13777 6.19434 6.20711 6.32412 6.34426 6.41373 6.56636 6.75344 6.79029 6.94233 7.00235 7.01328 7.11406 7.70667 8.06361 8.36481 8.75385 9.48030 10.01925 10.37076 11.39956 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.004888 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.759945 B = 5726.622872 C = 6781.957998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.154 4.154 3 C -0.044 4.044 4 H 0.082 0.918 5 C -0.114 4.114 6 C -0.158 4.158 7 C -0.137 4.137 8 C 0.507 3.493 9 O -0.546 6.546 10 N -0.710 5.710 11 C 0.122 3.878 12 C 0.175 3.825 13 N -0.699 5.699 14 C -0.234 4.234 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.904 3.096 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 C -0.154 4.154 23 C -0.129 4.129 24 C -0.145 4.145 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.397 0.603 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 -11.630 11.268 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.063 4.063 4 H 0.101 0.899 5 C -0.152 4.152 6 C -0.215 4.215 7 C -0.176 4.176 8 C 0.293 3.707 9 O -0.424 6.424 10 N -0.360 5.360 11 C -0.003 4.003 12 C 0.082 3.918 13 N -0.339 5.339 14 C -0.365 4.365 15 H 0.089 0.911 16 C -0.205 4.205 17 N -0.580 5.580 18 Si 0.735 3.265 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.195 4.195 23 C -0.166 4.166 24 C -0.183 4.183 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.231 0.769 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.659 -11.402 11.302 16.140 hybrid contribution 0.292 0.949 -0.331 1.047 sum -1.367 -10.453 10.971 15.215 Atomic orbital electron populations 1.23714 0.95992 1.01292 0.99371 1.22685 0.95986 0.97250 1.01262 1.20128 0.96545 0.96802 0.92805 0.89932 1.21529 0.98728 0.97598 0.97352 1.21868 1.00740 0.97034 1.01844 1.21761 0.98756 1.04192 0.92939 1.20541 0.89044 0.76376 0.84705 1.90655 1.15074 1.49870 1.86829 1.45821 1.10730 1.73912 1.05525 1.21760 0.93404 1.00784 0.84393 1.20794 0.92569 0.86950 0.91523 1.42062 1.05674 0.99523 1.86635 1.19111 0.91385 0.85428 1.40572 0.91149 1.24703 0.95674 0.97750 1.02379 1.69651 1.07358 1.25346 1.55652 0.86235 0.79227 0.83602 0.77431 1.21749 1.21793 1.20690 1.23392 0.96031 0.99886 1.00154 1.22633 0.98593 0.99505 0.95902 1.23154 0.99751 0.98151 0.97267 0.88512 0.89340 0.88194 0.91829 0.91964 0.92182 0.92641 0.92847 0.88525 0.89501 0.76913 0.93108 0.91161 0.77919 0.93520 0.91487 0.90786 0.90047 0.92793 0.91692 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 13.38 29.02 0.39 -1.72 16 2 C -0.15 -1.86 7.87 -36.03 -0.28 -2.14 16 3 C -0.04 -0.52 1.80 -91.77 -0.16 -0.69 16 4 H 0.08 1.15 7.50 -51.93 -0.39 0.76 16 5 C -0.11 -1.09 5.38 -26.73 -0.14 -1.23 16 6 C -0.16 -1.48 9.77 37.16 0.36 -1.11 16 7 C -0.14 -1.69 5.05 -27.88 -0.14 -1.83 16 8 C 0.51 8.37 7.51 -10.99 -0.08 8.29 16 9 O -0.55 -10.74 14.42 5.56 0.08 -10.66 16 10 N -0.71 -11.72 5.41 -60.29 -0.33 -12.05 16 11 C 0.12 2.26 5.13 -4.04 -0.02 2.24 16 12 C 0.17 3.24 0.89 -131.01 -0.12 3.12 16 13 N -0.70 -16.16 5.22 -46.48 -0.24 -16.40 16 14 C -0.23 -6.21 9.28 -15.06 -0.14 -6.35 16 15 H 0.07 1.88 7.18 -52.49 -0.38 1.51 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 18 Si 0.90 22.33 29.55 -169.99 -5.02 17.30 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.15 -2.69 7.33 -25.92 -0.19 -2.88 16 23 C -0.13 -2.03 7.99 -25.92 -0.21 -2.24 16 24 C -0.15 -2.22 6.75 -25.92 -0.17 -2.39 16 25 H 0.10 1.32 7.83 -52.49 -0.41 0.91 16 26 H 0.09 0.99 8.06 -52.49 -0.42 0.56 16 27 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 1.14 6.29 -51.93 -0.33 0.81 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.40 5.95 8.07 -40.82 -0.33 5.62 16 36 H 0.05 0.89 7.93 -51.93 -0.41 0.48 16 37 H 0.07 1.54 7.10 -51.93 -0.37 1.17 16 38 H 0.39 9.53 7.84 -40.82 -0.32 9.21 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.07 1.04 7.95 -51.93 -0.41 0.62 16 41 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 42 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.98 8.09 -51.92 -0.42 0.56 16 45 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -30.05 362.30 -8.21 -38.27 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -7.88 Total: 13.76 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.01 Total: -9.27 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.16 Total: -54.86 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.05 -8.21 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273140530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.901 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds