Wall clock time and date at job start Fri Apr 10 2020 17:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 C 1.53006 * 109.47195 * 2 1 4 4 N 1.46898 * 109.47425 * 119.99583 * 2 1 3 5 5 C 1.48728 * 111.00482 * 267.68143 * 4 2 1 6 6 C 1.55001 * 103.35717 * 201.18615 * 5 4 2 7 7 C 1.54801 * 102.94117 * 36.96066 * 6 5 4 8 8 C 1.47085 * 111.00324 * 150.51889 * 4 2 1 9 9 C 1.53863 * 110.69956 * 266.25823 * 8 4 2 10 10 C 1.54651 * 101.58064 * 96.21192 * 9 8 4 11 11 N 1.46854 * 105.50256 * 24.75496 * 10 9 8 12 12 C 1.46502 * 124.36712 * 163.12794 * 11 10 9 13 13 C 1.53002 * 109.47114 * 89.97238 * 12 11 10 14 14 C 1.50697 * 109.47267 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99774 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00086 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99969 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00017 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47214 * 60.00003 * 18 16 14 20 20 H 1.48506 * 109.47185 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47197 * 299.99768 * 18 16 14 22 22 C 1.34659 * 111.26481 * 343.12856 * 11 10 9 23 23 O 1.21287 * 125.08316 * 180.85256 * 22 11 10 24 24 H 1.08997 * 109.47142 * 60.00286 * 1 2 3 25 25 H 1.09006 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47585 * 300.00240 * 1 2 3 27 27 H 1.08999 * 109.47585 * 239.99760 * 2 1 3 28 28 H 1.09000 * 109.46872 * 170.01719 * 3 2 1 29 29 H 1.09007 * 109.46594 * 290.01311 * 3 2 1 30 30 H 1.08996 * 109.47244 * 50.01198 * 3 2 1 31 31 H 1.09000 * 110.63691 * 319.65188 * 5 4 2 32 32 H 1.09001 * 110.64637 * 82.71136 * 5 4 2 33 33 H 1.08998 * 110.71925 * 278.59678 * 6 5 4 34 34 H 1.09000 * 110.72268 * 155.31821 * 6 5 4 35 35 H 1.09005 * 110.36888 * 219.26132 * 7 6 5 36 36 H 1.08996 * 110.37195 * 96.92220 * 7 6 5 37 37 H 1.09000 * 111.00201 * 214.28539 * 9 8 4 38 38 H 1.08998 * 111.00554 * 338.13636 * 9 8 4 39 39 H 1.08997 * 110.23939 * 143.76006 * 10 9 8 40 40 H 1.08996 * 110.23911 * 265.74703 * 10 9 8 41 41 H 1.08996 * 109.46925 * 209.97272 * 12 11 10 42 42 H 1.09001 * 109.47153 * 329.97910 * 12 11 10 43 43 H 1.08994 * 109.47296 * 300.00611 * 13 12 11 44 44 H 1.09009 * 109.46800 * 60.00086 * 13 12 11 45 45 H 0.97000 * 120.00402 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.2503 0.2672 2.3121 6 6 3.2377 -0.4884 3.2377 7 6 4.1479 -1.2384 2.2350 8 6 3.3223 -1.3269 0.9469 9 6 3.1392 -2.7940 0.5209 10 6 3.1936 -2.6788 -1.0203 11 7 3.9600 -1.4568 -1.2958 12 6 4.5633 -1.1334 -2.5911 13 6 3.5598 -0.3500 -3.4397 14 6 4.1800 -0.0178 -4.7724 15 1 5.1893 -0.3335 -4.9919 16 6 3.4595 0.6900 -5.7109 17 7 2.2307 1.0748 -5.4434 18 14 4.2287 1.1023 -7.3625 19 1 4.5963 -0.1535 -8.0647 20 1 3.2546 1.8626 -8.1862 21 1 5.4464 1.9252 -7.1498 22 6 4.0368 -0.6720 -0.2043 23 8 4.5979 0.4022 -0.1562 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1152 1.4477 0.1782 29 1 1.8294 1.9023 -0.9657 30 1 1.5384 2.0052 0.7873 31 1 2.7007 1.1870 1.9390 32 1 1.3183 0.4795 2.8360 33 1 2.7051 -1.1928 3.8765 34 1 3.8191 0.2131 3.8360 35 1 4.3797 -2.2366 2.6064 36 1 5.0646 -0.6752 2.0601 37 1 3.9537 -3.4141 0.8954 38 1 2.1741 -3.1789 0.8502 39 1 3.6999 -3.5454 -1.4456 40 1 2.1863 -2.5921 -1.4277 41 1 5.4569 -0.5291 -2.4349 42 1 4.8334 -2.0551 -3.1064 43 1 2.6661 -0.9542 -3.5958 44 1 3.2896 0.5718 -2.9244 45 1 1.7239 1.5731 -6.1035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273913593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:27 Heat of formation + Delta-G solvation = -18.866545 kcal Electronic energy + Delta-G solvation = -24184.459997 eV Core-core repulsion = 21009.119245 eV Total energy + Delta-G solvation = -3175.340751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42863 -37.67793 -36.10156 -34.54997 -33.50006 -31.78604 -29.13898 -29.02703 -27.72849 -26.84827 -25.04558 -23.63326 -22.09856 -21.80673 -20.30970 -19.73891 -18.23038 -16.89782 -16.31246 -15.98857 -15.56199 -15.03829 -14.63294 -14.40069 -14.03571 -13.93492 -13.56112 -13.06391 -12.78581 -12.68341 -12.51593 -12.33411 -12.21005 -12.09259 -11.62792 -11.52769 -11.28433 -11.21505 -11.15767 -10.95008 -10.80922 -10.75035 -10.68147 -10.54209 -10.21565 -9.96055 -9.84995 -9.46877 -9.21324 -8.38647 -8.19228 -7.99920 -6.03768 -4.07361 2.88331 3.31646 3.35931 3.37720 3.52284 4.02118 4.42624 4.44094 4.52103 4.71129 4.94811 5.13504 5.16481 5.22379 5.32339 5.35042 5.48218 5.61242 5.66216 5.74267 5.79934 5.84183 5.87637 5.93133 5.98133 5.98948 6.03701 6.06331 6.10313 6.19542 6.24172 6.38727 6.43442 6.47516 6.73654 6.79266 6.98697 7.05677 7.16417 7.48038 7.63900 7.82261 7.95072 8.31764 8.62889 8.98708 9.56703 11.07405 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.005225 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.584674 B = 5357.221506 C = 5752.255674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.051 3.949 3 C -0.202 4.202 4 N -0.480 5.480 5 C 0.020 3.980 6 C -0.120 4.120 7 C -0.111 4.111 8 C 0.058 3.942 9 C -0.116 4.116 10 C 0.098 3.902 11 N -0.609 5.609 12 C 0.126 3.874 13 C 0.014 3.986 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.503 3.497 23 O -0.525 6.525 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.016 0.984 44 H 0.021 0.979 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 -7.329 16.079 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.057 4.057 3 C -0.259 4.259 4 N -0.205 5.205 5 C -0.108 4.108 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.035 4.035 9 C -0.154 4.154 10 C -0.026 4.026 11 N -0.341 5.341 12 C 0.006 3.994 13 C -0.024 4.024 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.289 3.711 23 O -0.402 6.402 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.410 -7.050 16.044 17.581 hybrid contribution 0.772 0.872 -1.449 1.859 sum -0.638 -6.178 14.595 15.862 Atomic orbital electron populations 1.21671 0.93982 1.01749 1.01292 1.22034 0.96412 0.94363 0.92935 1.22883 1.04513 0.96405 1.02121 1.65067 1.20772 1.28051 1.06584 1.23577 0.99281 0.95942 0.91967 1.22500 0.96993 0.99029 0.97252 1.22299 0.98414 1.01463 0.92817 1.22115 0.90562 0.96007 0.94824 1.22643 1.03940 0.94373 0.94451 1.22146 0.96959 0.87787 0.95700 1.48688 1.52681 1.20814 1.11938 1.21837 0.97554 0.99819 0.80207 1.19385 0.93958 0.95276 0.93751 1.21034 1.00139 1.35749 0.99303 0.92606 1.24981 0.94847 0.95635 0.98658 1.69956 1.09677 1.38196 1.35192 0.86627 0.79049 0.78536 0.83615 1.20187 1.21241 1.20172 1.20906 0.80062 0.84889 0.85270 1.90579 1.44925 1.20445 1.84206 0.92164 0.92412 0.93172 0.89105 0.88731 0.91925 0.93158 0.91265 0.90148 0.90920 0.91099 0.90488 0.90590 0.90035 0.88380 0.90539 0.91018 0.91235 0.91629 0.96546 0.96087 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.50 37.15 0.35 -1.51 16 2 C 0.05 0.83 2.49 -67.72 -0.17 0.66 16 3 C -0.20 -3.60 7.33 37.16 0.27 -3.32 16 4 N -0.48 -6.80 4.77 -208.91 -1.00 -7.80 16 5 C 0.02 0.25 5.80 -1.75 -0.01 0.24 16 6 C -0.12 -1.28 7.07 -24.73 -0.17 -1.46 16 7 C -0.11 -1.35 6.18 -25.65 -0.16 -1.51 16 8 C 0.06 0.83 0.79 -132.18 -0.10 0.73 16 9 C -0.12 -1.35 6.33 -25.41 -0.16 -1.51 16 10 C 0.10 1.37 6.65 -2.98 -0.02 1.35 16 11 N -0.61 -11.07 2.34 -172.50 -0.40 -11.47 16 12 C 0.13 2.67 5.88 -4.04 -0.02 2.65 16 13 C 0.01 0.37 5.30 -27.88 -0.15 0.22 16 14 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.50 9.27 4.37 -11.14 -0.05 9.22 16 23 O -0.52 -11.46 14.27 5.55 0.08 -11.38 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 1.74 4.90 -51.93 -0.25 1.49 16 28 H 0.09 1.89 3.70 -51.93 -0.19 1.70 16 29 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.05 0.77 7.03 -51.93 -0.36 0.41 16 31 H 0.07 1.01 5.05 -51.93 -0.26 0.75 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.76 7.40 -51.93 -0.38 0.37 16 36 H 0.08 1.04 7.44 -51.93 -0.39 0.65 16 37 H 0.08 0.79 7.57 -51.93 -0.39 0.40 16 38 H 0.10 1.03 8.07 -51.93 -0.42 0.62 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 41 H 0.07 1.56 7.94 -51.93 -0.41 1.14 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.61 8.14 -51.92 -0.42 0.18 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -31.68 340.21 -8.94 -40.62 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.66 Total: 1.99 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -0.80 Total: -7.71 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.67 Total: -45.33 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.68 -8.94 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273913593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.757 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds