Wall clock time and date at job start Fri Apr 10 2020 17:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47389 * 2 1 4 4 N 1.46902 * 109.47090 * 120.00065 * 2 1 3 5 5 C 1.48647 * 111.00274 * 178.00558 * 4 2 1 6 6 C 1.54637 * 104.63354 * 201.48816 * 5 4 2 7 7 C 1.53254 * 104.67349 * 23.69398 * 6 5 4 8 8 C 1.53617 * 111.05518 * 238.97902 * 7 6 5 9 9 C 1.54708 * 101.50946 * 262.70084 * 8 7 6 10 10 N 1.46885 * 105.51693 * 335.47603 * 9 8 7 11 11 C 1.46496 * 124.36919 * 196.83784 * 10 9 8 12 12 C 1.52999 * 109.47210 * 270.00269 * 11 10 9 13 13 C 1.50706 * 109.47489 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99398 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00168 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00377 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99817 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46659 * 90.00348 * 17 15 13 19 19 H 1.48498 * 109.46801 * 209.99825 * 17 15 13 20 20 H 1.48499 * 109.47287 * 330.00009 * 17 15 13 21 21 C 1.34751 * 111.25737 * 16.82094 * 10 9 8 22 22 O 1.21282 * 125.13659 * 178.73616 * 21 10 9 23 23 C 1.48804 * 110.99983 * 62.38515 * 4 2 1 24 24 H 1.08997 * 109.47455 * 300.00307 * 1 2 3 25 25 H 1.09003 * 109.46880 * 59.99911 * 1 2 3 26 26 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47394 * 240.00212 * 2 1 3 28 28 H 1.09004 * 109.46659 * 65.94447 * 3 2 1 29 29 H 1.08996 * 109.47158 * 185.94884 * 3 2 1 30 30 H 1.08996 * 109.46656 * 305.94448 * 3 2 1 31 31 H 1.08999 * 110.40680 * 82.69064 * 5 4 2 32 32 H 1.09005 * 110.50026 * 320.32747 * 5 4 2 33 33 H 1.09007 * 110.39215 * 264.89957 * 6 5 4 34 34 H 1.09000 * 110.39870 * 142.49755 * 6 5 4 35 35 H 1.09004 * 111.01272 * 144.64606 * 8 7 6 36 36 H 1.08994 * 111.05003 * 20.77442 * 8 7 6 37 37 H 1.08999 * 110.23928 * 216.46713 * 9 8 7 38 38 H 1.09000 * 110.30815 * 94.52477 * 9 8 7 39 39 H 1.08998 * 109.47574 * 29.99933 * 11 10 9 40 40 H 1.08997 * 109.47075 * 150.00641 * 11 10 9 41 41 H 1.08996 * 109.47389 * 299.99853 * 12 11 10 42 42 H 1.09002 * 109.47245 * 60.00047 * 12 11 10 43 43 H 0.96998 * 119.99919 * 180.02562 * 16 15 13 44 44 H 1.08998 * 110.45600 * 39.47255 * 23 4 2 45 45 H 1.09003 * 110.45550 * 276.90767 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.5048 -0.7544 1.2100 6 6 3.8402 -1.9289 2.1582 7 6 2.5870 -2.8110 2.1420 8 6 2.0011 -2.9635 3.5538 9 6 2.5969 -4.3229 3.9901 10 7 2.8830 -5.0449 2.7432 11 6 3.1225 -6.4877 2.6593 12 6 4.6177 -6.7669 2.8249 13 6 4.8642 -8.2512 2.7379 14 1 4.0371 -8.9275 2.5807 15 6 6.1454 -8.7455 2.8601 16 7 7.1524 -7.9219 3.0531 17 14 6.4508 -10.5853 2.7530 18 1 6.7062 -10.9631 1.3398 19 1 7.6312 -10.9401 3.5813 20 1 5.2580 -11.3151 3.2528 21 6 2.8963 -4.2087 1.6866 22 8 3.1280 -4.5345 0.5416 23 6 1.5903 -2.1173 1.2052 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.7662 1.9247 0.9385 29 1 3.1248 1.4443 -0.1065 30 1 1.5924 1.9861 -0.8320 31 1 3.9212 0.1763 1.5955 32 1 3.8856 -0.9539 0.2083 33 1 4.0324 -1.5605 3.1659 34 1 4.7007 -2.4844 1.7853 35 1 0.9124 -3.0057 3.5227 36 1 2.3406 -2.1600 4.2074 37 1 1.8739 -4.8767 4.5889 38 1 3.5157 -4.1692 4.5560 39 1 2.5686 -6.9946 3.4494 40 1 2.7896 -6.8554 1.6887 41 1 5.1717 -6.2602 2.0348 42 1 4.9507 -6.3992 3.7955 43 1 8.0539 -8.2697 3.1387 44 1 1.6539 -2.5384 0.2019 45 1 0.5759 -2.2079 1.5938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273916241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:38 Heat of formation + Delta-G solvation = -39.341976 kcal Electronic energy + Delta-G solvation = -22823.099704 eV Core-core repulsion = 19646.871071 eV Total energy + Delta-G solvation = -3176.228633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.92048 -38.39158 -36.02622 -34.87303 -33.27573 -31.61675 -29.46764 -29.16705 -27.98216 -27.00870 -25.05684 -23.47198 -22.30335 -21.75768 -20.39656 -19.95946 -18.51440 -16.73199 -16.45913 -15.75303 -15.51170 -15.27583 -14.62487 -14.60950 -14.36116 -13.99990 -13.65313 -13.28998 -13.04071 -12.65849 -12.56634 -12.49570 -12.38445 -12.25913 -12.08175 -11.86459 -11.59678 -11.31849 -11.28501 -10.99704 -10.97235 -10.94930 -10.79911 -10.66278 -10.55507 -9.99683 -9.84938 -9.34199 -9.08872 -8.58704 -8.37594 -8.00344 -6.02624 -4.06197 2.99497 3.31623 3.37113 3.39645 3.50559 3.87063 4.38601 4.45055 4.46143 4.52641 4.80693 4.84142 4.97282 5.11398 5.16958 5.24858 5.33524 5.38388 5.44519 5.51092 5.54748 5.62599 5.63530 5.72309 5.74304 5.80158 5.81327 5.90470 5.92101 5.99782 6.01420 6.09812 6.12589 6.15652 6.46063 6.70362 6.81014 6.94289 7.02399 7.51455 7.66522 7.85311 7.97171 8.33371 8.68053 9.00556 9.57903 11.08801 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034895 B = 0.003492 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.208949 B = 8015.595027 C = 8131.493434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 C -0.143 4.143 4 N -0.503 5.503 5 C 0.035 3.965 6 C -0.101 4.101 7 C -0.100 4.100 8 C -0.113 4.113 9 C 0.099 3.901 10 N -0.610 5.610 11 C 0.128 3.872 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.524 3.476 22 O -0.531 6.531 23 C 0.056 3.944 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.020 0.980 42 H 0.017 0.983 43 H 0.261 0.739 44 H 0.057 0.943 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.367 17.879 -0.241 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 C -0.200 4.200 4 N -0.228 5.228 5 C -0.092 4.092 6 C -0.139 4.139 7 C -0.104 4.104 8 C -0.151 4.151 9 C -0.024 4.024 10 N -0.342 5.342 11 C 0.008 3.992 12 C -0.026 4.026 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.310 3.690 22 O -0.408 6.408 23 C -0.073 4.073 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.038 0.962 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.265 17.908 -0.364 21.709 hybrid contribution 0.710 -1.539 -0.689 1.830 sum -11.556 16.369 -1.053 20.064 Atomic orbital electron populations 1.21831 0.94237 1.02065 1.02012 1.21824 0.95945 0.95391 0.91450 1.21825 1.00892 0.95125 1.02206 1.65567 1.07736 1.12470 1.37022 1.23155 0.88528 0.98750 0.98812 1.22166 0.96069 0.94823 1.00840 1.21386 0.97533 0.94432 0.97085 1.22649 1.00737 0.97155 0.94547 1.22128 1.00536 0.92323 0.87427 1.48625 1.69153 1.09133 1.07330 1.21806 1.00605 0.75409 1.01410 1.19402 0.88891 0.96799 0.97495 1.21090 0.93122 0.91904 1.50013 0.92486 1.25002 0.96176 0.98003 0.95095 1.69974 0.99399 1.34434 1.49351 0.86550 0.77780 0.85329 0.78079 1.20584 1.21189 1.19804 1.20215 0.76794 0.86961 0.85051 1.90689 1.49935 1.80763 1.19399 1.22925 0.98000 0.87648 0.98680 0.91784 0.92375 0.92636 0.93908 0.91711 0.92761 0.92351 0.89854 0.93521 0.89900 0.90545 0.90154 0.89107 0.90625 0.91070 0.91604 0.91232 0.96168 0.96444 0.92934 0.92502 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.11 37.16 0.34 -0.90 16 2 C 0.06 0.62 2.44 -67.71 -0.16 0.46 16 3 C -0.14 -1.18 8.96 37.16 0.33 -0.85 16 4 N -0.50 -5.64 5.20 -222.21 -1.16 -6.79 16 5 C 0.04 0.41 5.47 -2.00 -0.01 0.40 16 6 C -0.10 -1.30 6.32 -25.74 -0.16 -1.47 16 7 C -0.10 -1.39 0.83 -155.25 -0.13 -1.52 16 8 C -0.11 -1.26 6.24 -25.51 -0.16 -1.42 16 9 C 0.10 1.36 7.37 -2.93 -0.02 1.33 16 10 N -0.61 -11.24 2.94 -172.53 -0.51 -11.75 16 11 C 0.13 2.75 5.88 -4.04 -0.02 2.72 16 12 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 17 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.52 9.90 6.65 -11.23 -0.07 9.83 16 22 O -0.53 -12.27 17.10 5.56 0.09 -12.18 16 23 C 0.06 0.70 4.57 -2.58 -0.01 0.69 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.50 7.02 -51.93 -0.36 0.14 16 27 H 0.04 0.48 7.98 -51.93 -0.41 0.06 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.45 7.32 -51.93 -0.38 0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 32 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16 33 H 0.08 0.92 7.32 -51.93 -0.38 0.54 16 34 H 0.08 1.17 7.76 -51.93 -0.40 0.77 16 35 H 0.08 0.79 7.51 -51.93 -0.39 0.40 16 36 H 0.09 0.85 7.43 -51.93 -0.39 0.46 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.58 7.95 -51.93 -0.41 1.16 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.06 0.84 7.32 -51.93 -0.38 0.46 16 45 H 0.09 0.96 7.05 -51.93 -0.37 0.60 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -33.06 352.86 -9.22 -42.28 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.04 Total: -3.06 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.65 Total: -4.20 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.93 Total: -45.00 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.06 -9.22 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273916241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.943 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds