Wall clock time and date at job start Fri Apr 10 2020 17:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47389 * 2 1 4 4 N 1.46902 * 109.47090 * 120.00065 * 2 1 3 5 5 C 1.48647 * 111.00274 * 178.00558 * 4 2 1 6 6 C 1.54637 * 104.63354 * 201.48816 * 5 4 2 7 7 C 1.53254 * 104.67349 * 23.69398 * 6 5 4 8 8 C 1.53617 * 111.05518 * 238.97902 * 7 6 5 9 9 C 1.54708 * 101.50946 * 262.70084 * 8 7 6 10 10 N 1.46885 * 105.51693 * 335.47603 * 9 8 7 11 11 C 1.46496 * 124.36919 * 196.83784 * 10 9 8 12 12 C 1.52999 * 109.47210 * 270.00269 * 11 10 9 13 13 C 1.50706 * 109.47489 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99398 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00168 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00377 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99817 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46659 * 90.00348 * 17 15 13 19 19 H 1.48498 * 109.46801 * 209.99825 * 17 15 13 20 20 H 1.48499 * 109.47287 * 330.00009 * 17 15 13 21 21 C 1.34751 * 111.25737 * 16.82094 * 10 9 8 22 22 O 1.21282 * 125.13659 * 178.73616 * 21 10 9 23 23 C 1.48804 * 110.99983 * 62.38515 * 4 2 1 24 24 H 1.08997 * 109.47455 * 300.00307 * 1 2 3 25 25 H 1.09003 * 109.46880 * 59.99911 * 1 2 3 26 26 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47394 * 240.00212 * 2 1 3 28 28 H 1.09004 * 109.46659 * 65.94447 * 3 2 1 29 29 H 1.08996 * 109.47158 * 185.94884 * 3 2 1 30 30 H 1.08996 * 109.46656 * 305.94448 * 3 2 1 31 31 H 1.08999 * 110.40680 * 82.69064 * 5 4 2 32 32 H 1.09005 * 110.50026 * 320.32747 * 5 4 2 33 33 H 1.09007 * 110.39215 * 264.89957 * 6 5 4 34 34 H 1.09000 * 110.39870 * 142.49755 * 6 5 4 35 35 H 1.09004 * 111.01272 * 144.64606 * 8 7 6 36 36 H 1.08994 * 111.05003 * 20.77442 * 8 7 6 37 37 H 1.08999 * 110.23928 * 216.46713 * 9 8 7 38 38 H 1.09000 * 110.30815 * 94.52477 * 9 8 7 39 39 H 1.08998 * 109.47574 * 29.99933 * 11 10 9 40 40 H 1.08997 * 109.47075 * 150.00641 * 11 10 9 41 41 H 1.08996 * 109.47389 * 299.99853 * 12 11 10 42 42 H 1.09002 * 109.47245 * 60.00047 * 12 11 10 43 43 H 0.96998 * 119.99919 * 180.02562 * 16 15 13 44 44 H 1.08998 * 110.45600 * 39.47255 * 23 4 2 45 45 H 1.09003 * 110.45550 * 276.90767 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.5048 -0.7544 1.2100 6 6 3.8402 -1.9289 2.1582 7 6 2.5870 -2.8110 2.1420 8 6 2.0011 -2.9635 3.5538 9 6 2.5969 -4.3229 3.9901 10 7 2.8830 -5.0449 2.7432 11 6 3.1225 -6.4877 2.6593 12 6 4.6177 -6.7669 2.8249 13 6 4.8642 -8.2512 2.7379 14 1 4.0371 -8.9275 2.5807 15 6 6.1454 -8.7455 2.8601 16 7 7.1524 -7.9219 3.0531 17 14 6.4508 -10.5853 2.7530 18 1 6.7062 -10.9631 1.3398 19 1 7.6312 -10.9401 3.5813 20 1 5.2580 -11.3151 3.2528 21 6 2.8963 -4.2087 1.6866 22 8 3.1280 -4.5345 0.5416 23 6 1.5903 -2.1173 1.2052 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.7662 1.9247 0.9385 29 1 3.1248 1.4443 -0.1065 30 1 1.5924 1.9861 -0.8320 31 1 3.9212 0.1763 1.5955 32 1 3.8856 -0.9539 0.2083 33 1 4.0324 -1.5605 3.1659 34 1 4.7007 -2.4844 1.7853 35 1 0.9124 -3.0057 3.5227 36 1 2.3406 -2.1600 4.2074 37 1 1.8739 -4.8767 4.5889 38 1 3.5157 -4.1692 4.5560 39 1 2.5686 -6.9946 3.4494 40 1 2.7896 -6.8554 1.6887 41 1 5.1717 -6.2602 2.0348 42 1 4.9507 -6.3992 3.7955 43 1 8.0539 -8.2697 3.1387 44 1 1.6539 -2.5384 0.2019 45 1 0.5759 -2.2079 1.5938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273916241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:37 Heat of formation + Delta-G solvation = -61.627859 kcal Electronic energy + Delta-G solvation = -22824.066092 eV Core-core repulsion = 19646.871071 eV Total energy + Delta-G solvation = -3177.195021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16428 -39.51328 -37.54099 -36.22724 -35.05938 -33.14436 -30.80766 -30.36627 -29.12724 -27.79996 -26.96195 -24.66031 -23.60710 -23.16475 -21.69487 -20.94630 -19.89721 -18.70689 -17.65036 -17.19005 -16.79120 -16.59418 -16.38538 -15.79774 -15.50527 -15.00310 -14.85142 -14.70678 -14.51039 -14.24726 -14.03943 -13.75164 -13.34632 -13.24336 -13.08428 -12.94124 -12.91980 -12.86570 -12.57239 -12.52206 -12.21510 -12.03532 -11.98852 -11.84273 -11.75440 -11.63619 -11.52448 -11.42413 -10.70743 -10.61815 -9.60350 -9.54015 -8.26110 -6.39405 1.37355 1.40017 1.50228 1.52388 2.08973 2.39320 2.87857 3.07326 3.32732 3.37150 3.53788 3.89688 4.02721 4.07888 4.10893 4.22278 4.29163 4.36782 4.42764 4.46847 4.59562 4.61147 4.68680 4.74750 4.78691 4.83598 4.85255 4.93401 4.95799 4.97624 5.02645 5.04632 5.08510 5.19008 5.29238 5.32429 5.39611 5.43220 5.57489 5.76232 5.79735 6.04741 6.12378 6.26198 6.75901 7.17101 7.30697 8.86170 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034895 B = 0.003492 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.208949 B = 8015.595027 C = 8131.493434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.056 3.944 3 C -0.137 4.137 4 N -0.491 5.491 5 C 0.039 3.961 6 C -0.102 4.102 7 C -0.096 4.096 8 C -0.095 4.095 9 C 0.091 3.909 10 N -0.617 5.617 11 C 0.141 3.859 12 C 0.024 3.976 13 C -0.546 4.546 14 H 0.067 0.933 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.971 3.029 18 H -0.277 1.277 19 H -0.279 1.279 20 H -0.256 1.256 21 C 0.509 3.491 22 O -0.588 6.588 23 C 0.061 3.939 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.027 0.973 33 H 0.110 0.890 34 H 0.040 0.960 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.050 0.950 41 H -0.030 1.030 42 H 0.001 0.999 43 H 0.265 0.735 44 H 0.025 0.975 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.222 18.805 1.496 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.195 4.195 4 N -0.215 5.215 5 C -0.089 4.089 6 C -0.140 4.140 7 C -0.100 4.100 8 C -0.132 4.132 9 C -0.031 4.031 10 N -0.348 5.348 11 C 0.020 3.980 12 C -0.014 4.014 13 C -0.585 4.585 14 H 0.085 0.915 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.795 3.205 18 H -0.203 1.203 19 H -0.204 1.204 20 H -0.180 1.180 21 C 0.297 3.703 22 O -0.469 6.469 23 C -0.067 4.067 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.046 0.954 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.069 0.931 41 H -0.012 1.012 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.149 18.862 1.410 23.621 hybrid contribution 1.332 -1.802 -1.266 2.574 sum -12.817 17.060 0.144 21.338 Atomic orbital electron populations 1.21805 0.92907 1.01891 1.03095 1.21961 0.97078 0.96117 0.90073 1.21789 1.00753 0.93810 1.03131 1.65658 1.07164 1.11163 1.37556 1.23164 0.89036 0.99131 0.97590 1.22219 0.94415 0.94829 1.02547 1.21407 0.98473 0.90943 0.99136 1.22716 1.01927 0.96238 0.92358 1.22488 1.01447 0.93659 0.85504 1.48754 1.68523 1.08111 1.09408 1.21385 0.97163 0.78132 1.01367 1.19205 0.91850 0.95751 0.94548 1.21553 0.93858 0.92983 1.50061 0.91458 1.26042 0.95839 1.03614 0.94343 1.70118 0.99984 1.37011 1.50142 0.85354 0.78327 0.78632 0.78171 1.20263 1.20389 1.17989 1.21223 0.75556 0.89200 0.84329 1.90638 1.52283 1.82155 1.21839 1.22886 0.98713 0.88308 0.96835 0.90922 0.91072 0.93435 0.95866 0.91059 0.93059 0.91004 0.87393 0.95444 0.87124 0.94117 0.87754 0.86024 0.87971 0.91310 0.88791 0.93100 1.01210 0.98041 0.92660 0.95636 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.11 71.98 0.66 -1.47 16 2 C 0.06 1.05 2.44 44.92 0.11 1.16 16 3 C -0.14 -1.98 8.96 71.98 0.65 -1.33 16 4 N -0.49 -10.21 5.20 -856.93 -4.46 -14.66 16 5 C 0.04 0.86 5.47 86.52 0.47 1.34 16 6 C -0.10 -2.60 6.32 31.24 0.20 -2.40 16 7 C -0.10 -2.58 0.83 -52.66 -0.04 -2.62 16 8 C -0.10 -1.79 6.24 31.38 0.20 -1.60 16 9 C 0.09 2.29 7.37 86.89 0.64 2.93 16 10 N -0.62 -23.03 2.94 -818.17 -2.41 -25.44 16 11 C 0.14 6.23 5.88 86.38 0.51 6.73 16 12 C 0.02 1.36 5.30 29.85 0.16 1.52 16 13 C -0.55 -31.95 9.11 25.60 0.23 -31.72 16 14 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 15 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 16 N -0.93 -58.40 13.29 21.44 0.28 -58.12 16 17 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 21 C 0.51 20.01 6.65 87.51 0.58 20.59 16 22 O -0.59 -29.28 17.10 -3.03 -0.05 -29.33 16 23 C 0.06 1.50 4.57 86.06 0.39 1.89 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.80 7.02 -2.39 -0.02 0.78 16 27 H 0.02 0.53 7.98 -2.39 -0.02 0.51 16 28 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.05 0.77 7.32 -2.39 -0.02 0.75 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 1.89 7.85 -2.39 -0.02 1.87 16 32 H 0.03 0.71 7.94 -2.38 -0.02 0.69 16 33 H 0.11 2.19 7.32 -2.38 -0.02 2.17 16 34 H 0.04 1.32 7.76 -2.39 -0.02 1.30 16 35 H 0.10 1.55 7.51 -2.38 -0.02 1.53 16 36 H 0.12 1.65 7.43 -2.39 -0.02 1.63 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 40 H 0.05 2.41 7.95 -2.39 -0.02 2.39 16 41 H -0.03 -1.98 8.14 -2.39 -0.02 -2.00 16 42 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.03 0.79 7.32 -2.39 -0.02 0.77 16 45 H 0.11 2.15 7.05 -2.39 -0.02 2.14 16 Total: -1.00 -76.68 352.86 1.54 -75.14 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.94 Total: 9.90 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 5.21 Total: -4.54 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -6.58 Total: -98.22 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.05 Total: -29.33 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -76.68 1.54 -75.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273916241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.509 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds