Wall clock time and date at job start Fri Apr 10 2020 17:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47451 * 2 1 4 4 H 1.09002 * 109.46716 * 304.99789 * 3 2 1 5 5 C 1.52997 * 109.47317 * 184.99880 * 3 2 1 6 6 N 1.46500 * 109.46944 * 64.99440 * 3 2 1 7 7 C 1.33358 * 117.33708 * 60.00729 * 6 3 2 8 8 O 1.21276 * 118.76891 * 359.96142 * 7 6 3 9 9 C 1.50330 * 122.45907 * 179.97438 * 7 6 3 10 10 C 1.52897 * 109.35734 * 338.45016 * 9 7 6 11 11 C 1.53124 * 109.29152 * 52.64363 * 10 9 7 12 12 H 1.08997 * 111.55977 * 60.95707 * 11 10 9 13 13 C 1.44684 * 117.33803 * 239.74638 * 6 3 2 14 14 H 1.09003 * 109.82197 * 47.13532 * 13 6 3 15 15 C 1.54162 * 110.97346 * 285.24541 * 13 6 3 16 16 C 1.54086 * 104.99949 * 217.93883 * 15 13 6 17 17 N 1.48758 * 107.93236 * 184.03765 * 11 10 9 18 18 C 1.46904 * 111.00483 * 316.84393 * 17 11 10 19 19 C 1.50698 * 109.47275 * 169.99953 * 18 17 11 20 20 H 1.07999 * 119.99957 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99641 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99857 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00282 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47362 * 89.99989 * 23 21 19 25 25 H 1.48503 * 109.47189 * 209.99908 * 23 21 19 26 26 H 1.48502 * 109.47394 * 329.99897 * 23 21 19 27 27 H 1.09000 * 109.46961 * 60.00367 * 1 2 3 28 28 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47443 * 300.00108 * 1 2 3 30 30 H 1.08998 * 109.47348 * 239.99118 * 2 1 3 31 31 H 1.09000 * 109.46961 * 119.99633 * 2 1 3 32 32 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 33 33 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 35 35 H 1.08999 * 109.49024 * 98.42260 * 9 7 6 36 36 H 1.09007 * 109.48586 * 218.46452 * 9 7 6 37 37 H 1.09000 * 109.50002 * 172.58792 * 10 9 7 38 38 H 1.08997 * 109.50384 * 292.69490 * 10 9 7 39 39 H 1.08996 * 110.33492 * 336.82015 * 15 13 6 40 40 H 1.09004 * 110.33568 * 99.06395 * 15 13 6 41 41 H 1.09003 * 109.91812 * 117.62515 * 16 15 13 42 42 H 1.08998 * 109.92425 * 238.73264 * 16 15 13 43 43 H 1.08999 * 109.46771 * 290.00762 * 18 17 11 44 44 H 1.09001 * 109.46365 * 50.00133 * 18 17 11 45 45 H 0.97000 * 120.00142 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 7 1.6524 2.0975 1.2518 7 6 2.1022 1.5627 2.3876 8 8 2.8005 0.5728 2.3303 9 6 1.7758 2.1409 3.7364 10 6 1.3757 3.6078 3.5756 11 6 0.2672 3.7176 2.5249 12 1 -0.6221 3.1614 2.8212 13 6 0.8176 3.2751 1.1546 14 1 -0.0099 3.0863 0.4706 15 6 1.6333 4.4917 0.6737 16 6 1.0777 5.6857 1.4736 17 7 -0.0293 5.1610 2.3211 18 6 -0.0842 5.8737 3.6045 19 6 -0.1400 7.3584 3.3527 20 1 -0.1356 7.7350 2.3405 21 6 -0.1979 8.2360 4.4146 22 7 -0.2471 9.5317 4.1949 23 14 -0.2063 7.5846 6.1652 24 1 1.1900 7.4698 6.6575 25 1 -0.9634 8.5183 7.0372 26 1 -0.8523 6.2477 6.1929 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9995 0.9053 0.7162 33 1 3.9281 2.4719 -0.1261 34 1 3.8533 0.9569 -1.0571 35 1 0.9497 1.5851 4.1800 36 1 2.6503 2.0708 4.3833 37 1 1.0131 3.9926 4.5287 38 1 2.2407 4.1877 3.2539 39 1 2.6914 4.3486 0.8925 40 1 1.4844 4.6493 -0.3945 41 1 1.8624 6.1106 2.0997 42 1 0.6959 6.4448 0.7908 43 1 -0.9734 5.5645 4.1539 44 1 0.8047 5.6375 4.1894 45 1 -0.2874 10.1491 4.9419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:05 Heat of formation + Delta-G solvation = -24.432980 kcal Electronic energy + Delta-G solvation = -23916.410157 eV Core-core repulsion = 20740.828027 eV Total energy + Delta-G solvation = -3175.582130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20317 -38.62031 -36.22738 -34.08848 -32.75131 -32.33837 -30.57412 -29.57115 -28.08372 -26.56538 -24.22585 -23.53647 -22.87864 -21.93682 -20.68598 -19.37976 -18.02634 -16.99324 -16.79797 -15.96419 -15.81233 -15.14759 -14.46216 -14.42710 -14.33444 -13.98539 -13.60922 -13.42964 -13.21119 -13.08404 -12.69971 -12.52291 -12.31114 -12.14930 -11.96777 -11.69700 -11.48087 -11.29659 -11.24655 -11.13705 -10.98620 -10.88388 -10.73524 -10.54332 -10.31672 -10.25964 -9.85371 -9.30864 -9.18769 -8.67038 -8.59483 -7.58818 -6.12658 -4.10966 2.70081 3.01049 3.22232 3.31213 3.31520 4.34995 4.44630 4.55839 4.74136 4.81368 4.87285 4.98875 5.06363 5.11081 5.21552 5.30392 5.31886 5.35299 5.43232 5.49720 5.56563 5.61727 5.67926 5.76071 5.81792 5.86346 5.91926 5.96905 6.02247 6.10518 6.15304 6.27253 6.28192 6.38704 6.50767 6.54140 6.66405 6.73864 6.92427 7.36777 7.59178 7.74194 7.81721 8.25878 8.52868 8.93922 9.48361 11.00239 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029067 B = 0.004892 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.060603 B = 5722.266532 C = 6059.238951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.142 3.858 4 H 0.083 0.917 5 C -0.170 4.170 6 N -0.585 5.585 7 C 0.523 3.477 8 O -0.554 6.554 9 C -0.134 4.134 10 C -0.154 4.154 11 C 0.057 3.943 12 H 0.097 0.903 13 C 0.145 3.855 14 H 0.090 0.910 15 C -0.145 4.145 16 C 0.054 3.946 17 N -0.497 5.497 18 C 0.146 3.854 19 C -0.517 4.517 20 H 0.081 0.919 21 C 0.071 3.929 22 N -0.898 5.898 23 Si 0.873 3.127 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.266 1.266 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.031 0.969 44 H -0.001 1.001 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -16.253 -6.838 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.038 3.962 4 H 0.101 0.899 5 C -0.228 4.228 6 N -0.316 5.316 7 C 0.312 3.688 8 O -0.434 6.434 9 C -0.175 4.175 10 C -0.193 4.193 11 C -0.053 4.053 12 H 0.115 0.885 13 C 0.040 3.960 14 H 0.108 0.892 15 C -0.184 4.184 16 C -0.074 4.074 17 N -0.220 5.220 18 C 0.020 3.980 19 C -0.555 4.555 20 H 0.099 0.901 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.701 3.299 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.190 1.190 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.049 0.951 44 H 0.016 0.984 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.564 -16.452 -6.999 18.231 hybrid contribution 0.680 -0.024 1.414 1.570 sum 4.244 -16.476 -5.584 17.907 Atomic orbital electron populations 1.21734 0.95906 1.01259 1.01679 1.22001 0.95887 0.96497 1.03826 1.21105 0.95502 0.93566 0.86004 0.89911 1.22229 0.95283 1.02188 1.03114 1.47113 1.50273 1.27985 1.06217 1.20134 0.79018 0.83469 0.86149 1.90582 1.38623 1.26561 1.87602 1.21649 1.03904 0.97410 0.94507 1.22309 1.00081 0.94906 1.01979 1.22967 0.96525 0.93531 0.92259 0.88503 1.21464 0.92303 0.83966 0.98226 0.89183 1.22894 0.99621 0.95185 1.00687 1.22805 0.93166 0.95461 0.95998 1.65266 1.40771 0.98937 1.17068 1.20494 0.95750 0.95135 0.86654 1.21048 1.50827 0.88041 0.95553 0.90138 1.24892 0.94671 0.94728 0.98843 1.69887 1.50577 1.01543 1.31672 0.86888 0.78448 0.79339 0.85268 1.20308 1.21108 1.19035 0.93062 0.93047 0.92761 0.91645 0.89144 0.89932 0.92873 0.92246 0.88588 0.88588 0.89609 0.90952 0.91483 0.91067 0.92851 0.90331 0.95057 0.98386 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.80 37.16 0.36 -1.13 16 2 C -0.14 -1.57 5.23 -26.73 -0.14 -1.71 16 3 C 0.14 1.58 2.42 -67.93 -0.16 1.42 16 4 H 0.08 0.83 7.82 -51.93 -0.41 0.43 16 5 C -0.17 -1.92 9.07 37.16 0.34 -1.59 16 6 N -0.58 -7.31 1.88 -159.08 -0.30 -7.61 16 7 C 0.52 7.29 6.86 -11.79 -0.08 7.21 16 8 O -0.55 -8.84 12.43 5.56 0.07 -8.77 16 9 C -0.13 -1.71 6.07 -28.12 -0.17 -1.89 16 10 C -0.15 -2.25 3.93 -26.72 -0.11 -2.35 16 11 C 0.06 0.85 3.47 -66.01 -0.23 0.62 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 13 C 0.15 1.88 2.96 -67.69 -0.20 1.68 16 14 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.14 -1.96 5.97 -25.56 -0.15 -2.11 16 16 C 0.05 0.95 4.80 -2.11 -0.01 0.94 16 17 N -0.50 -9.39 5.42 -223.31 -1.21 -10.60 16 18 C 0.15 3.27 3.24 -4.97 -0.02 3.25 16 19 C -0.52 -13.89 8.98 -34.44 -0.31 -14.20 16 20 H 0.08 2.35 7.09 -52.49 -0.37 1.98 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 23 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.20 5.78 -51.93 -0.30 0.90 16 32 H 0.08 1.12 5.89 -51.93 -0.31 0.81 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.09 1.34 6.33 -51.93 -0.33 1.01 16 38 H 0.07 1.13 6.87 -51.93 -0.36 0.78 16 39 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 1.03 7.40 -51.93 -0.38 0.65 16 42 H 0.08 1.46 7.73 -51.93 -0.40 1.06 16 43 H 0.03 0.73 7.20 -51.93 -0.37 0.35 16 44 H 0.00 -0.03 4.99 -51.93 -0.26 -0.29 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -29.37 332.83 -9.00 -38.37 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.70 Total: 1.52 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -0.97 Total: -7.98 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.74 Total: -44.14 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.37 -9.00 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.935 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds