Wall clock time and date at job start Fri Apr 10 2020 17:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47451 * 2 1 4 4 H 1.09002 * 109.46716 * 304.99789 * 3 2 1 5 5 C 1.52997 * 109.47317 * 184.99880 * 3 2 1 6 6 N 1.46500 * 109.46944 * 64.99440 * 3 2 1 7 7 C 1.33358 * 117.33708 * 60.00729 * 6 3 2 8 8 O 1.21276 * 118.76891 * 359.96142 * 7 6 3 9 9 C 1.50330 * 122.45907 * 179.97438 * 7 6 3 10 10 C 1.52897 * 109.35734 * 338.45016 * 9 7 6 11 11 C 1.53124 * 109.29152 * 52.64363 * 10 9 7 12 12 H 1.08997 * 111.55977 * 60.95707 * 11 10 9 13 13 C 1.44684 * 117.33803 * 239.74638 * 6 3 2 14 14 H 1.09003 * 109.82197 * 47.13532 * 13 6 3 15 15 C 1.54162 * 110.97346 * 285.24541 * 13 6 3 16 16 C 1.54086 * 104.99949 * 217.93883 * 15 13 6 17 17 N 1.48758 * 107.93236 * 184.03765 * 11 10 9 18 18 C 1.46904 * 111.00483 * 316.84393 * 17 11 10 19 19 C 1.50698 * 109.47275 * 169.99953 * 18 17 11 20 20 H 1.07999 * 119.99957 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99641 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99857 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00282 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47362 * 89.99989 * 23 21 19 25 25 H 1.48503 * 109.47189 * 209.99908 * 23 21 19 26 26 H 1.48502 * 109.47394 * 329.99897 * 23 21 19 27 27 H 1.09000 * 109.46961 * 60.00367 * 1 2 3 28 28 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47443 * 300.00108 * 1 2 3 30 30 H 1.08998 * 109.47348 * 239.99118 * 2 1 3 31 31 H 1.09000 * 109.46961 * 119.99633 * 2 1 3 32 32 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 33 33 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 35 35 H 1.08999 * 109.49024 * 98.42260 * 9 7 6 36 36 H 1.09007 * 109.48586 * 218.46452 * 9 7 6 37 37 H 1.09000 * 109.50002 * 172.58792 * 10 9 7 38 38 H 1.08997 * 109.50384 * 292.69490 * 10 9 7 39 39 H 1.08996 * 110.33492 * 336.82015 * 15 13 6 40 40 H 1.09004 * 110.33568 * 99.06395 * 15 13 6 41 41 H 1.09003 * 109.91812 * 117.62515 * 16 15 13 42 42 H 1.08998 * 109.92425 * 238.73264 * 16 15 13 43 43 H 1.08999 * 109.46771 * 290.00762 * 18 17 11 44 44 H 1.09001 * 109.46365 * 50.00133 * 18 17 11 45 45 H 0.97000 * 120.00142 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 7 1.6524 2.0975 1.2518 7 6 2.1022 1.5627 2.3876 8 8 2.8005 0.5728 2.3303 9 6 1.7758 2.1409 3.7364 10 6 1.3757 3.6078 3.5756 11 6 0.2672 3.7176 2.5249 12 1 -0.6221 3.1614 2.8212 13 6 0.8176 3.2751 1.1546 14 1 -0.0099 3.0863 0.4706 15 6 1.6333 4.4917 0.6737 16 6 1.0777 5.6857 1.4736 17 7 -0.0293 5.1610 2.3211 18 6 -0.0842 5.8737 3.6045 19 6 -0.1400 7.3584 3.3527 20 1 -0.1356 7.7350 2.3405 21 6 -0.1979 8.2360 4.4146 22 7 -0.2471 9.5317 4.1949 23 14 -0.2063 7.5846 6.1652 24 1 1.1900 7.4698 6.6575 25 1 -0.9634 8.5183 7.0372 26 1 -0.8523 6.2477 6.1929 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9995 0.9053 0.7162 33 1 3.9281 2.4719 -0.1261 34 1 3.8533 0.9569 -1.0571 35 1 0.9497 1.5851 4.1800 36 1 2.6503 2.0708 4.3833 37 1 1.0131 3.9926 4.5287 38 1 2.2407 4.1877 3.2539 39 1 2.6914 4.3486 0.8925 40 1 1.4844 4.6493 -0.3945 41 1 1.8624 6.1106 2.0997 42 1 0.6959 6.4448 0.7908 43 1 -0.9734 5.5645 4.1539 44 1 0.8047 5.6375 4.1894 45 1 -0.2874 10.1491 4.9419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:04 Heat of formation + Delta-G solvation = -42.939358 kcal Electronic energy + Delta-G solvation = -23917.212653 eV Core-core repulsion = 20740.828027 eV Total energy + Delta-G solvation = -3176.384627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31174 -39.88900 -37.25641 -35.52485 -34.39243 -33.61424 -31.86761 -30.57465 -29.43170 -28.17743 -25.27734 -24.55580 -24.35168 -23.16476 -21.88061 -20.75952 -19.11881 -18.80595 -18.07924 -17.19089 -16.90748 -16.29003 -16.21443 -15.71291 -15.44469 -15.21318 -14.70735 -14.66152 -14.51949 -14.37311 -14.05415 -13.84324 -13.51287 -13.25914 -13.15722 -12.89884 -12.79558 -12.60265 -12.42315 -12.39052 -12.22353 -12.01369 -11.88678 -11.82141 -11.74258 -11.58302 -11.41522 -11.28238 -10.78644 -10.28833 -9.63896 -9.11850 -8.27139 -6.30161 1.35327 1.37764 1.47582 1.63316 1.98474 2.35234 3.06625 3.21034 3.42752 3.56902 3.68147 3.88817 3.96973 4.10204 4.17852 4.22051 4.24544 4.30202 4.42093 4.49826 4.54613 4.66176 4.73000 4.78781 4.79888 4.81173 4.86694 4.88756 4.97120 5.07005 5.08316 5.12753 5.15211 5.22241 5.27413 5.32662 5.37900 5.44813 5.53357 5.72636 5.94598 6.14343 6.52932 6.59062 6.76616 7.20276 7.33416 8.89148 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029067 B = 0.004892 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.060603 B = 5722.266532 C = 6059.238951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.137 3.863 4 H 0.103 0.897 5 C -0.165 4.165 6 N -0.579 5.579 7 C 0.519 3.481 8 O -0.575 6.575 9 C -0.127 4.127 10 C -0.148 4.148 11 C 0.056 3.944 12 H 0.110 0.890 13 C 0.156 3.844 14 H 0.108 0.892 15 C -0.131 4.131 16 C 0.057 3.943 17 N -0.511 5.511 18 C 0.157 3.843 19 C -0.519 4.519 20 H 0.041 0.959 21 C 0.010 3.990 22 N -0.948 5.948 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.286 1.286 26 H -0.243 1.243 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.027 0.973 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.007 0.993 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -18.657 -7.015 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.034 3.966 4 H 0.121 0.879 5 C -0.223 4.223 6 N -0.309 5.309 7 C 0.308 3.692 8 O -0.456 6.456 9 C -0.167 4.167 10 C -0.187 4.187 11 C -0.053 4.053 12 H 0.128 0.872 13 C 0.051 3.949 14 H 0.126 0.874 15 C -0.170 4.170 16 C -0.072 4.072 17 N -0.234 5.234 18 C 0.030 3.970 19 C -0.557 4.557 20 H 0.059 0.941 21 C -0.188 4.188 22 N -0.589 5.589 23 Si 0.764 3.236 24 H -0.194 1.194 25 H -0.211 1.211 26 H -0.167 1.167 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.024 0.976 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.408 -18.882 -7.200 20.494 hybrid contribution 0.743 0.745 1.357 1.718 sum 4.151 -18.138 -5.843 19.502 Atomic orbital electron populations 1.21706 0.95160 1.01699 1.01676 1.21933 0.96453 0.96017 1.03321 1.21300 0.95513 0.93981 0.85785 0.87923 1.22169 0.95277 1.01819 1.03064 1.47084 1.49741 1.27525 1.06589 1.20311 0.78796 0.83282 0.86762 1.90595 1.39562 1.27554 1.87910 1.21619 1.04840 0.95964 0.94319 1.22184 0.99245 0.96026 1.01213 1.23083 0.97416 0.90989 0.93801 0.87214 1.21349 0.92548 0.83810 0.97145 0.87446 1.22789 0.99472 0.93414 1.01289 1.22691 0.92087 0.96842 0.95557 1.65118 1.41770 1.01031 1.15478 1.20232 0.95830 0.92457 0.88477 1.21331 1.49724 0.90838 0.93844 0.94098 1.25807 0.94426 0.94787 1.03737 1.70047 1.52579 1.03178 1.33128 0.85804 0.78959 0.79554 0.79235 1.19400 1.21147 1.16673 0.91769 0.92516 0.93927 0.90106 0.91673 0.92365 0.93134 0.90313 0.86828 0.87958 0.90447 0.92387 0.91295 0.88765 0.95412 0.92277 0.95165 0.97562 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.80 71.98 0.71 -1.79 16 2 C -0.14 -2.66 5.23 30.59 0.16 -2.50 16 3 C 0.14 2.66 2.42 44.99 0.11 2.77 16 4 H 0.10 1.63 7.82 -2.39 -0.02 1.62 16 5 C -0.17 -3.37 9.07 71.98 0.65 -2.72 16 6 N -0.58 -13.01 1.88 -776.39 -1.46 -14.47 16 7 C 0.52 13.44 6.86 87.76 0.60 14.04 16 8 O -0.57 -17.57 12.43 -3.02 -0.04 -17.60 16 9 C -0.13 -2.97 6.07 29.70 0.18 -2.79 16 10 C -0.15 -4.06 3.93 30.60 0.12 -3.94 16 11 C 0.06 1.57 3.47 44.99 0.16 1.72 16 12 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 13 C 0.16 3.64 2.96 46.11 0.14 3.78 16 14 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.13 -3.29 5.97 31.36 0.19 -3.10 16 16 C 0.06 2.00 4.80 86.27 0.41 2.41 16 17 N -0.51 -18.95 5.42 -860.41 -4.66 -23.62 16 18 C 0.16 6.97 3.24 85.56 0.28 7.25 16 19 C -0.52 -28.64 8.98 25.60 0.23 -28.42 16 20 H 0.04 2.51 7.09 -2.91 -0.02 2.49 16 21 C 0.01 0.55 5.47 84.65 0.46 1.02 16 22 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 23 Si 0.94 42.46 27.47 68.60 1.88 44.34 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.04 0.83 7.75 -2.39 -0.02 0.81 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.62 5.78 -2.39 -0.01 1.61 16 32 H 0.06 1.50 5.89 -2.39 -0.01 1.49 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.08 2.27 6.33 -2.39 -0.02 2.25 16 38 H 0.06 1.76 6.87 -2.39 -0.02 1.74 16 39 H 0.07 1.75 8.06 -2.39 -0.02 1.73 16 40 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.03 1.10 7.40 -2.39 -0.02 1.08 16 42 H 0.06 2.28 7.73 -2.39 -0.02 2.26 16 43 H 0.03 1.35 7.20 -2.39 -0.02 1.34 16 44 H 0.01 0.29 4.99 -2.39 -0.01 0.28 16 45 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -65.23 332.83 1.31 -63.92 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.90 Total: 17.57 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 4.39 Total: -12.27 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -5.83 Total: -95.95 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.04 Total: -17.60 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -65.23 1.31 -63.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.976 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds