Wall clock time and date at job start Fri Apr 10 2020 17:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 119.99828 * 2 1 4 4 H 1.09001 * 109.47000 * 359.97438 * 3 2 1 5 5 C 1.53004 * 109.47047 * 240.00013 * 3 2 1 6 6 C 1.53003 * 109.47086 * 65.00089 * 5 3 2 7 7 C 1.52997 * 109.47112 * 119.99934 * 3 2 1 8 8 C 1.50695 * 109.47162 * 184.99853 * 7 3 2 9 9 O 1.21289 * 120.00292 * 0.02562 * 8 7 3 10 10 N 1.34776 * 120.00258 * 180.02562 * 8 7 3 11 11 C 1.46499 * 120.00159 * 355.18034 * 10 8 7 12 12 C 1.46502 * 120.00296 * 175.17809 * 10 8 7 13 13 C 1.52997 * 109.46913 * 90.42763 * 12 10 8 14 14 H 1.08992 * 112.74362 * 313.22292 * 13 12 10 15 15 C 1.53503 * 113.46546 * 84.04843 * 13 12 10 16 16 C 1.53493 * 83.34689 * 140.84578 * 15 13 12 17 17 N 1.47068 * 87.98469 * 333.93196 * 16 15 13 18 18 C 1.36944 * 136.05548 * 207.16000 * 17 16 15 19 19 H 1.08000 * 119.99800 * 172.09253 * 18 17 16 20 20 C 1.38811 * 120.00153 * 352.08701 * 18 17 16 21 21 N 1.31614 * 119.99831 * 164.21703 * 20 18 17 22 22 Si 1.86795 * 119.99995 * 344.22603 * 20 18 17 23 23 H 1.48507 * 109.47534 * 84.62444 * 22 20 18 24 24 H 1.48498 * 109.47344 * 204.62561 * 22 20 18 25 25 H 1.48504 * 109.47255 * 324.62537 * 22 20 18 26 26 H 1.08005 * 120.00279 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99956 * 179.72894 * 1 2 3 28 28 H 1.07996 * 120.00537 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46726 * 184.99926 * 5 3 2 30 30 H 1.09006 * 109.47221 * 305.00055 * 5 3 2 31 31 H 1.08993 * 109.47113 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.46855 * 299.99906 * 6 5 3 33 33 H 1.08992 * 109.47001 * 59.99901 * 6 5 3 34 34 H 1.08991 * 109.47321 * 305.00335 * 7 3 2 35 35 H 1.09010 * 109.46946 * 65.00271 * 7 3 2 36 36 H 1.08996 * 109.47202 * 89.99426 * 11 10 8 37 37 H 1.08991 * 109.47540 * 210.00276 * 11 10 8 38 38 H 1.09002 * 109.46728 * 330.00051 * 11 10 8 39 39 H 1.08996 * 109.47218 * 210.43035 * 12 10 8 40 40 H 1.09002 * 109.47049 * 330.43390 * 12 10 8 41 41 H 1.09003 * 114.19984 * 254.43213 * 15 13 12 42 42 H 1.08999 * 114.20786 * 27.25355 * 15 13 12 43 43 H 1.09001 * 113.47095 * 219.15237 * 16 15 13 44 44 H 1.09006 * 113.51991 * 88.71735 * 16 15 13 45 45 H 0.97003 * 119.99681 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0563 1.4308 -2.4954 7 6 2.9430 1.3862 1.2492 8 6 3.6019 2.7401 1.3127 9 8 3.3885 3.5597 0.4445 10 7 4.4282 3.0402 2.3342 11 6 4.6040 2.0920 3.4371 12 6 5.1507 4.3146 2.3418 13 6 4.3105 5.3729 3.0593 14 1 3.2712 5.3795 2.7311 15 6 4.4707 5.3489 4.5858 16 6 4.4203 6.8757 4.4363 17 7 4.9305 6.7065 3.0673 18 6 5.6619 7.4592 2.1876 19 1 6.0086 7.0232 1.2623 20 6 5.9574 8.7824 2.4850 21 7 6.9005 9.4122 1.8170 22 14 5.0169 9.6692 3.8334 23 1 5.6411 9.3748 5.1483 24 1 5.0555 11.1325 3.5838 25 1 3.6062 9.2053 3.8403 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0044 28 1 1.8500 -0.9352 0.0004 29 1 3.5539 2.2879 -1.2056 30 1 3.5906 0.5105 -1.2952 31 1 2.6829 1.4890 -3.3853 32 1 1.4455 0.5291 -2.5390 33 1 1.4089 2.3064 -2.4494 34 1 2.3279 1.2396 2.1369 35 1 3.7085 0.6114 1.2055 36 1 5.4286 1.4170 3.2079 37 1 4.8254 2.6381 4.3540 38 1 3.6886 1.5153 3.5697 39 1 6.1005 4.1907 2.8620 40 1 5.3370 4.6328 1.3161 41 1 3.6197 4.9236 5.1178 42 1 5.4315 4.9648 4.9283 43 1 5.1122 7.3996 5.0957 44 1 3.4101 7.2835 4.4757 45 1 7.1073 10.3368 2.0251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316599297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:40 Heat of formation + Delta-G solvation = 15.905975 kcal Electronic energy + Delta-G solvation = -22559.133488 eV Core-core repulsion = 19385.300587 eV Total energy + Delta-G solvation = -3173.832902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25450 -40.04740 -37.73429 -36.36439 -34.43634 -32.64054 -31.82670 -30.45961 -29.67710 -27.34153 -25.78683 -25.13739 -23.84603 -22.65156 -21.17305 -20.51631 -19.96186 -18.87649 -17.82320 -17.50422 -17.18516 -16.62883 -16.04306 -15.64119 -15.52033 -15.46555 -14.96725 -14.72004 -14.31974 -14.16092 -13.97728 -13.66626 -13.56961 -13.43749 -13.36097 -13.11831 -12.79681 -12.63565 -12.57823 -12.08569 -12.06660 -11.97715 -11.94325 -11.81125 -11.62382 -11.50199 -11.16290 -11.00959 -10.58142 -10.16516 -9.58170 -9.17570 -8.15486 -5.42777 1.25657 1.33868 1.41452 1.45432 1.72750 2.08923 2.39575 3.05482 3.12780 3.56615 3.67794 3.81725 4.08975 4.12024 4.19552 4.29032 4.39315 4.40140 4.41490 4.45591 4.57173 4.58387 4.63026 4.64933 4.80278 4.83002 4.91589 4.93621 4.96825 4.97329 5.03046 5.08612 5.12883 5.20076 5.23153 5.40737 5.45319 5.48038 5.66316 5.79769 5.99939 6.14227 6.50112 6.54217 7.30794 7.42209 8.26765 9.05706 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.003913 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.277825 B = 7154.773144 C = 7635.592624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.142 4.142 3 C -0.047 4.047 4 H 0.052 0.948 5 C -0.122 4.122 6 C -0.145 4.145 7 C -0.118 4.118 8 C 0.496 3.504 9 O -0.587 6.587 10 N -0.611 5.611 11 C 0.069 3.931 12 C 0.131 3.869 13 C 0.133 3.867 14 H 0.032 0.968 15 C -0.113 4.113 16 C 0.084 3.916 17 N -0.648 5.648 18 C -0.207 4.207 19 H 0.060 0.940 20 C -0.051 4.051 21 N -0.971 5.971 22 Si 0.952 3.048 23 H -0.267 1.267 24 H -0.306 1.306 25 H -0.266 1.266 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.034 0.966 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 -25.599 5.077 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.160 4.160 3 C -0.065 4.065 4 H 0.071 0.929 5 C -0.159 4.159 6 C -0.202 4.202 7 C -0.157 4.157 8 C 0.286 3.714 9 O -0.467 6.467 10 N -0.344 5.344 11 C -0.072 4.072 12 C 0.006 3.994 13 C 0.026 3.974 14 H 0.050 0.950 15 C -0.151 4.151 16 C -0.041 4.041 17 N -0.376 5.376 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.244 4.244 21 N -0.620 5.620 22 Si 0.780 3.220 23 H -0.193 1.193 24 H -0.234 1.234 25 H -0.191 1.191 26 H 0.103 0.897 27 H 0.133 0.867 28 H 0.148 0.852 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.516 -24.913 4.468 27.408 hybrid contribution -0.164 1.666 -0.229 1.690 sum -10.680 -23.247 4.240 25.932 Atomic orbital electron populations 1.23991 0.96032 1.02190 1.00743 1.22879 0.95857 0.97365 0.99889 1.20113 0.96560 0.96058 0.93820 0.92923 1.21610 0.98204 1.01756 0.94349 1.21702 0.99654 1.01476 0.97373 1.21741 1.00556 0.92768 1.00663 1.21601 0.78679 0.90592 0.80514 1.90713 1.62936 1.52339 1.40696 1.47997 1.44538 1.18560 1.23273 1.22171 1.03876 0.92527 0.88631 1.21328 0.94950 0.83194 0.99940 1.22532 0.94357 0.84812 0.95659 0.95030 1.23431 1.03864 0.93793 0.93966 1.22797 0.96893 0.98349 0.86012 1.46498 1.60142 1.17113 1.13850 1.18509 1.22015 0.92900 1.00069 0.92256 1.25436 0.99989 0.97214 1.01716 1.69905 1.33344 1.12287 1.46438 0.85737 0.79933 0.76682 0.79634 1.19306 1.23403 1.19065 0.89727 0.86674 0.85204 0.93475 0.90864 0.92946 0.91351 0.94485 0.86287 0.86095 0.90908 0.89721 0.88356 0.89146 0.94766 0.87587 0.87767 0.93336 0.94030 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 14.32 67.79 0.97 -1.67 16 2 C -0.14 -2.00 7.75 25.65 0.20 -1.80 16 3 C -0.05 -0.94 1.80 -11.54 -0.02 -0.96 16 4 H 0.05 1.37 7.60 -2.39 -0.02 1.35 16 5 C -0.12 -2.81 5.18 30.60 0.16 -2.66 16 6 C -0.14 -3.14 9.73 71.98 0.70 -2.44 16 7 C -0.12 -2.05 3.82 29.85 0.11 -1.94 16 8 C 0.50 14.26 7.34 87.66 0.64 14.90 16 9 O -0.59 -23.80 13.61 -3.06 -0.04 -23.84 16 10 N -0.61 -15.89 2.87 -846.78 -2.43 -18.32 16 11 C 0.07 0.94 10.21 127.77 1.30 2.25 16 12 C 0.13 4.67 5.30 86.38 0.46 5.13 16 13 C 0.13 5.22 4.31 41.80 0.18 5.40 16 14 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 15 C -0.11 -3.33 7.33 30.93 0.23 -3.11 16 16 C 0.08 3.43 5.62 83.18 0.47 3.89 16 17 N -0.65 -32.42 3.49 -713.81 -2.49 -34.91 16 18 C -0.21 -12.67 10.97 84.03 0.92 -11.74 16 19 H 0.06 4.00 8.06 -2.91 -0.02 3.97 16 20 C -0.05 -3.18 5.50 84.86 0.47 -2.71 16 21 N -0.97 -64.44 13.97 21.65 0.30 -64.14 16 22 Si 0.95 48.93 25.09 68.60 1.72 50.66 16 23 H -0.27 -12.76 6.69 99.48 0.67 -12.09 16 24 H -0.31 -15.87 7.11 99.48 0.71 -15.17 16 25 H -0.27 -13.12 6.15 99.48 0.61 -12.51 16 26 H 0.08 1.35 7.83 -2.91 -0.02 1.32 16 27 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 28 H 0.13 1.29 8.06 -2.91 -0.02 1.26 16 29 H 0.05 1.48 5.88 -2.39 -0.01 1.46 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.22 7.38 -2.39 -0.02 1.20 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.12 1.45 7.26 -2.39 -0.02 1.43 16 35 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 1.04 7.38 -2.39 -0.02 1.02 16 38 H 0.10 0.78 6.48 -2.39 -0.02 0.77 16 39 H 0.09 2.97 7.86 -2.39 -0.02 2.95 16 40 H 0.03 1.56 7.48 -2.39 -0.02 1.54 16 41 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.10 2.71 7.97 -2.39 -0.02 2.69 16 43 H 0.05 2.03 6.13 -2.39 -0.01 2.01 16 44 H 0.04 1.70 7.21 -2.38 -0.02 1.68 16 45 H 0.26 16.43 8.31 -92.71 -0.77 15.65 16 Total: -1.00 -81.87 354.08 4.65 -77.23 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.80 Total: 10.78 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.79 Total: 2.54 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.62 Total: -117.37 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.84 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 1.72 Total: 50.66 kcal Total: -81.87 4.65 -77.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.135 kcal (2) G-P(sol) polarization free energy of solvation -81.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds