Wall clock time and date at job start Fri Apr 10 2020 17:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46779 * 2 1 4 4 H 1.09002 * 109.47599 * 305.00194 * 3 2 1 5 5 C 1.53005 * 109.46932 * 185.00211 * 3 2 1 6 6 N 1.46502 * 109.47072 * 184.99880 * 5 3 2 7 7 C 1.34774 * 119.99980 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00038 * 180.02562 * 7 6 5 10 10 H 1.08992 * 115.60713 * 34.09170 * 9 7 6 11 11 C 1.52303 * 117.53564 * 180.02562 * 9 7 6 12 12 H 1.08995 * 115.91680 * 1.58579 * 11 9 7 13 13 C 1.52073 * 119.83678 * 217.19590 * 11 9 7 14 14 C 1.52879 * 110.51262 * 310.44727 * 13 11 9 15 15 C 1.53298 * 108.58912 * 305.10842 * 14 13 11 16 16 C 1.52882 * 108.73074 * 74.35359 * 15 14 13 17 17 C 1.51365 * 117.71708 * 248.83651 * 9 7 6 18 18 H 1.08996 * 117.38281 * 359.86534 * 17 9 7 19 19 N 1.46499 * 109.47615 * 65.00022 * 3 2 1 20 20 C 1.36936 * 120.00149 * 275.00366 * 19 3 2 21 21 H 1.08004 * 119.99734 * 359.97438 * 20 19 3 22 22 C 1.38805 * 120.00012 * 179.97438 * 20 19 3 23 23 N 1.31627 * 120.00194 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00255 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46783 * 59.99706 * 24 22 20 26 26 H 1.48499 * 109.47626 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46726 * 300.00083 * 24 22 20 28 28 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47120 * 300.00126 * 1 2 3 30 30 H 1.09006 * 109.47268 * 59.99898 * 1 2 3 31 31 H 1.08996 * 109.46673 * 240.00499 * 2 1 3 32 32 H 1.08992 * 109.47103 * 119.99994 * 2 1 3 33 33 H 1.08993 * 109.47166 * 65.00111 * 5 3 2 34 34 H 1.08996 * 109.46851 * 304.99894 * 5 3 2 35 35 H 0.97001 * 120.00045 * 0.02562 * 6 5 3 36 36 H 1.08994 * 109.27163 * 190.17757 * 13 11 9 37 37 H 1.09004 * 109.26519 * 70.71071 * 13 11 9 38 38 H 1.09005 * 109.61338 * 185.38057 * 14 13 11 39 39 H 1.08999 * 109.76477 * 64.92910 * 14 13 11 40 40 H 1.09002 * 109.61851 * 194.17366 * 15 14 13 41 41 H 1.08998 * 109.62050 * 314.53609 * 15 14 13 42 42 H 1.09000 * 109.35452 * 65.77361 * 16 15 14 43 43 H 1.08997 * 109.35636 * 185.35557 * 16 15 14 44 44 H 0.97005 * 120.00008 * 94.99572 * 19 3 2 45 45 H 0.97003 * 119.99686 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8169 -0.0060 7 6 5.3857 3.0630 -0.0859 8 8 6.1634 2.1484 -0.2574 9 6 5.8982 4.4749 0.0378 10 1 5.3407 5.1206 0.7161 11 6 7.4028 4.6889 -0.0615 12 1 8.0001 3.7955 -0.2434 13 6 8.0774 5.7355 0.8116 14 6 7.3357 7.0691 0.7191 15 6 7.2396 7.4735 -0.7565 16 6 6.1889 6.5970 -1.4383 17 6 6.4891 5.1201 -1.1974 18 1 6.5135 4.5256 -2.1106 19 7 1.6524 2.0976 1.2518 20 6 0.4156 2.6735 1.3688 21 1 -0.2741 2.6451 0.5381 22 6 0.0482 3.2937 2.5550 23 7 0.8885 3.3278 3.5676 24 14 -1.6387 4.0799 2.7145 25 1 -2.6870 3.0483 2.5094 26 1 -1.7839 4.6699 4.0696 27 1 -1.7865 5.1461 1.6915 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8498 1.0378 -1.0960 34 1 3.9954 0.8312 0.6658 35 1 3.4410 3.5484 0.1315 36 1 9.1063 5.8724 0.4792 37 1 8.0768 5.3947 1.8470 38 1 7.8837 7.8317 1.2726 39 1 6.3340 6.9635 1.1356 40 1 6.9466 8.5208 -0.8306 41 1 8.2061 7.3289 -1.2393 42 1 5.2072 6.8177 -1.0192 43 1 6.1793 6.8099 -2.5073 44 1 2.2719 2.1232 1.9978 45 1 0.6316 3.7609 4.3967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318512298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:57 Heat of formation + Delta-G solvation = -33.106343 kcal Electronic energy + Delta-G solvation = -22383.273669 eV Core-core repulsion = 19207.315434 eV Total energy + Delta-G solvation = -3175.958235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38298 -38.39975 -36.60674 -33.63142 -33.18446 -32.35486 -30.88142 -29.77001 -28.11891 -25.46989 -23.74329 -22.79345 -22.62743 -21.50353 -20.13817 -19.60042 -18.39725 -17.50381 -17.01527 -15.58146 -15.37342 -15.28949 -14.53808 -14.25105 -14.07675 -14.03017 -13.78673 -13.43295 -13.16514 -12.99029 -12.59725 -12.40089 -12.20781 -12.12144 -11.77101 -11.45200 -11.22201 -10.99531 -10.94280 -10.88619 -10.75109 -10.44897 -10.36722 -10.21028 -10.04856 -9.97663 -9.75166 -9.54834 -9.38652 -8.95798 -8.57455 -7.04482 -5.82419 -3.11697 2.81322 3.38811 3.44368 3.45222 3.53909 3.88214 4.53036 4.60382 4.64673 4.70847 4.91740 5.03909 5.12125 5.27024 5.34437 5.42642 5.44258 5.47765 5.49452 5.56895 5.61145 5.82363 5.85525 5.92615 5.93698 5.96683 5.98611 6.00717 6.13257 6.17257 6.18499 6.23630 6.33151 6.42965 6.55537 6.58028 6.61507 6.94112 7.03376 7.23986 7.64695 8.01070 8.34948 8.64245 9.46743 10.01966 10.38025 11.39409 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.004441 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.985336 B = 6303.242041 C = 7472.425133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.707 5.707 7 C 0.539 3.461 8 O -0.559 6.559 9 C -0.181 4.181 10 H 0.124 0.876 11 C -0.110 4.110 12 H 0.112 0.888 13 C -0.088 4.088 14 C -0.126 4.126 15 C -0.118 4.118 16 C -0.092 4.092 17 C -0.119 4.119 18 H 0.101 0.899 19 N -0.721 5.721 20 C -0.238 4.238 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.032 0.968 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.989 5.360 -8.868 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.357 5.357 7 C 0.325 3.675 8 O -0.438 6.438 9 C -0.202 4.202 10 H 0.141 0.859 11 C -0.128 4.128 12 H 0.130 0.870 13 C -0.125 4.125 14 C -0.163 4.163 15 C -0.155 4.155 16 C -0.130 4.130 17 C -0.138 4.138 18 H 0.120 0.880 19 N -0.363 5.363 20 C -0.369 4.369 21 H 0.090 0.910 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.333 4.775 -8.995 15.236 hybrid contribution -1.273 0.595 0.571 1.516 sum 10.060 5.370 -8.424 14.178 Atomic orbital electron populations 1.21770 0.95727 0.99627 1.03234 1.22068 0.96956 0.98436 1.00004 1.20561 0.89961 0.92773 0.91405 0.92893 1.21661 0.95590 0.82778 1.00945 1.45903 1.07001 1.10666 1.72165 1.19631 0.82409 0.89366 0.76046 1.90638 1.56331 1.46211 1.50635 1.22101 0.98268 0.95857 1.03985 0.85860 1.21836 0.90858 1.00760 0.99386 0.87028 1.20863 0.98794 0.93521 0.99323 1.21648 1.01188 0.96871 0.96608 1.21548 0.99373 0.98811 0.95770 1.21088 0.99306 0.91817 1.00772 1.21788 1.02710 0.96596 0.92683 0.88038 1.42448 1.16748 1.65851 1.11293 1.19162 0.91961 1.27791 0.97959 0.90979 1.24727 0.98030 1.01575 0.96368 1.69657 1.35245 1.48949 1.03951 0.86339 0.84284 0.79236 0.76738 1.21273 1.21786 1.21314 0.94883 0.89673 0.94131 0.93875 0.92536 0.92026 0.91927 0.75272 0.91245 0.91246 0.91772 0.91502 0.91912 0.91763 0.91323 0.91278 0.78086 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.16 0.34 -2.28 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 3 C 0.16 3.05 2.59 -67.93 -0.18 2.87 16 4 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.11 2.00 5.23 -4.04 -0.02 1.98 16 6 N -0.71 -12.13 5.39 -60.29 -0.32 -12.45 16 7 C 0.54 9.27 7.61 -10.98 -0.08 9.18 16 8 O -0.56 -11.20 16.19 5.56 0.09 -11.11 16 9 C -0.18 -2.51 5.28 -92.95 -0.49 -3.00 16 10 H 0.12 1.67 7.27 -51.93 -0.38 1.29 16 11 C -0.11 -1.35 5.65 -91.94 -0.52 -1.87 16 12 H 0.11 1.53 7.55 -51.93 -0.39 1.14 16 13 C -0.09 -0.89 5.93 -27.27 -0.16 -1.05 16 14 C -0.13 -1.18 5.70 -26.64 -0.15 -1.33 16 15 C -0.12 -1.02 5.93 -26.64 -0.16 -1.18 16 16 C -0.09 -0.90 5.89 -26.99 -0.16 -1.06 16 17 C -0.12 -1.40 5.71 -92.14 -0.53 -1.92 16 18 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 19 N -0.72 -16.48 4.51 -53.43 -0.24 -16.72 16 20 C -0.24 -6.02 7.75 -15.06 -0.12 -6.14 16 21 H 0.07 1.78 7.32 -52.48 -0.38 1.40 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 24 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.80 5.99 -51.93 -0.31 1.49 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.41 7.12 8.14 -40.82 -0.33 6.79 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.69 7.13 -51.93 -0.37 0.32 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.53 8.05 -51.93 -0.42 0.12 16 42 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.39 9.67 7.80 -40.82 -0.32 9.36 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -28.82 354.98 -9.84 -38.67 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -7.95 Total: 14.55 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.47 Total: -8.67 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.16 Total: -55.18 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.82 -9.84 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318512298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.559 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds