Wall clock time and date at job start Fri Apr 10 2020 17:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.09000 * 109.47314 * 54.99967 * 3 2 1 5 5 C 1.52997 * 109.46646 * 174.99857 * 3 2 1 6 6 N 1.46508 * 109.46962 * 175.00266 * 5 3 2 7 7 C 1.34777 * 120.00033 * 179.97438 * 6 5 3 8 8 O 1.21277 * 119.99872 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99895 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.47127 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.64307 * 305.00417 * 10 9 7 12 12 C 1.53020 * 109.63741 * 65.42558 * 10 9 7 13 13 C 1.50165 * 110.09488 * 168.90254 * 12 10 9 14 14 C 1.29444 * 124.14684 * 343.28308 * 13 12 10 15 15 C 1.50071 * 124.07430 * 0.23900 * 14 13 12 16 16 C 1.53016 * 110.14671 * 342.86628 * 15 14 13 17 17 N 1.46495 * 109.47168 * 294.99682 * 3 2 1 18 18 C 1.36932 * 120.00087 * 84.99921 * 17 3 2 19 19 H 1.08008 * 120.00080 * 0.02562 * 18 17 3 20 20 C 1.38812 * 120.00221 * 179.97438 * 18 17 3 21 21 N 1.31621 * 120.00004 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00078 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47011 * 60.00425 * 22 20 18 24 24 H 1.48499 * 109.46940 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46911 * 299.99896 * 22 20 18 26 26 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 27 27 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 29 29 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 30 30 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 31 31 H 1.09003 * 109.47223 * 294.99671 * 5 3 2 32 32 H 1.08998 * 109.47339 * 55.00028 * 5 3 2 33 33 H 0.96995 * 119.99649 * 359.97438 * 6 5 3 34 34 H 1.08994 * 109.47348 * 300.00372 * 9 7 6 35 35 H 1.08998 * 109.46862 * 60.00226 * 9 7 6 36 36 H 1.08997 * 109.35719 * 289.32388 * 12 10 9 37 37 H 1.08999 * 109.36143 * 48.91155 * 12 10 9 38 38 H 1.08004 * 117.89244 * 163.07335 * 13 12 10 39 39 H 1.08003 * 117.96265 * 180.25814 * 14 13 12 40 40 H 1.08996 * 109.35575 * 222.66100 * 15 14 13 41 41 H 1.09002 * 109.24527 * 103.01079 * 15 14 13 42 42 H 1.09000 * 109.64609 * 289.75385 * 16 15 14 43 43 H 1.09002 * 109.81665 * 169.21945 * 16 15 14 44 44 H 0.97003 * 120.00290 * 265.00338 * 17 3 2 45 45 H 0.96997 * 120.00160 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4444 0.1258 6 7 4.0629 2.8170 0.0061 7 6 5.3855 3.0633 0.0870 8 8 6.1631 2.1488 0.2594 9 6 5.8979 4.4750 -0.0367 10 6 7.4227 4.4771 0.0904 11 1 7.7133 3.9910 1.0216 12 6 8.0385 3.7295 -1.0942 13 6 9.5231 3.9527 -1.1297 14 6 10.1312 4.8982 -0.4881 15 6 9.4380 5.9019 0.3862 16 6 7.9390 5.9216 0.0797 17 7 1.6523 2.0975 -1.2518 18 6 0.4155 2.6734 -1.3689 19 1 -0.2742 2.6451 -0.5382 20 6 0.0485 3.2944 -2.5548 21 7 0.8891 3.3293 -3.5670 22 14 -1.6385 4.0806 -2.7143 23 1 -1.7868 5.1461 -1.6906 24 1 -1.7832 4.6715 -4.0690 25 1 -2.6867 3.0488 -2.5103 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8497 1.0379 1.0961 32 1 3.9953 0.8312 -0.6658 33 1 3.4408 3.5484 -0.1314 34 1 5.6133 4.8812 -1.0073 35 1 5.4669 5.0886 0.7544 36 1 7.8320 2.6639 -0.9957 37 1 7.5984 4.0966 -2.0214 38 1 10.1211 3.2794 -1.7259 39 1 11.2042 4.9695 -0.5884 40 1 9.8573 6.8912 0.2030 41 1 9.5897 5.6332 1.4316 42 1 7.7716 6.3633 -0.9026 43 1 7.4145 6.5037 0.8375 44 1 2.2718 2.1232 -1.9978 45 1 0.6325 3.7630 -4.3958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665828484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:54 Heat of formation + Delta-G solvation = -42.125374 kcal Electronic energy + Delta-G solvation = -22164.140460 eV Core-core repulsion = 18987.791130 eV Total energy + Delta-G solvation = -3176.349330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.77655 -38.16319 -36.63007 -33.64029 -32.74967 -32.34361 -30.74512 -29.79315 -28.44974 -26.67993 -23.76327 -23.20435 -22.51082 -21.15935 -20.14294 -19.53462 -17.95578 -17.35297 -16.47972 -16.08723 -15.48395 -15.31116 -14.84490 -14.25600 -14.08875 -13.97540 -13.46317 -13.18888 -13.09236 -12.82829 -12.74837 -12.44547 -12.29197 -12.11890 -12.01820 -11.55622 -11.35488 -10.97128 -10.89235 -10.74814 -10.67074 -10.54904 -10.44156 -10.21431 -10.13893 -10.03560 -9.55513 -9.37076 -8.96717 -8.94436 -8.55415 -7.05157 -5.83245 -3.12421 2.30694 3.02496 3.38405 3.44010 3.44902 3.64335 4.52619 4.64644 4.70030 4.85097 5.13226 5.17977 5.32399 5.34569 5.42644 5.43946 5.53309 5.56310 5.61383 5.70551 5.80462 5.81704 5.83559 5.92537 5.95791 5.97622 5.98886 6.15398 6.17625 6.33584 6.42798 6.45735 6.55480 6.57854 6.61455 6.66594 6.93358 6.99386 7.03872 7.23440 7.64060 8.00841 8.34191 8.65331 9.46043 10.01318 10.37342 11.38543 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.003720 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.463059 B = 7525.926590 C = 8453.114574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.714 5.714 7 C 0.509 3.491 8 O -0.554 6.554 9 C -0.139 4.139 10 C -0.067 4.067 11 H 0.078 0.922 12 C -0.095 4.095 13 C -0.141 4.141 14 C -0.171 4.171 15 C -0.087 4.087 16 C -0.117 4.117 17 N -0.721 5.721 18 C -0.238 4.238 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.511 3.068 7.925 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.365 5.365 7 C 0.296 3.704 8 O -0.434 6.434 9 C -0.179 4.179 10 C -0.086 4.086 11 H 0.096 0.904 12 C -0.131 4.131 13 C -0.159 4.159 14 C -0.190 4.190 15 C -0.124 4.124 16 C -0.155 4.155 17 N -0.363 5.363 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.246 0.754 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.878 2.494 8.049 15.390 hybrid contribution -1.077 0.678 -0.600 1.407 sum 11.801 3.172 7.449 14.311 Atomic orbital electron populations 1.21770 0.95756 0.99621 1.03228 1.22071 0.96938 0.98485 0.99985 1.20559 0.90072 0.92720 0.91359 0.92941 1.21635 0.95497 0.82956 1.00887 1.46033 1.07322 1.10646 1.72515 1.20617 0.82337 0.91238 0.76225 1.90620 1.55913 1.46762 1.50058 1.21761 0.96868 0.94705 1.04541 1.20912 0.92373 0.95433 0.99909 0.90368 1.20682 0.91950 1.02764 0.97748 1.22160 0.96807 0.97680 0.99290 1.21975 0.99218 0.97644 1.00121 1.20396 0.95008 0.97997 0.99007 1.21688 0.95291 0.96462 1.02053 1.42443 1.16732 1.65861 1.11304 1.19163 0.91993 1.27789 0.97980 0.90992 1.24726 0.98022 1.01560 0.96373 1.69649 1.35231 1.48913 1.03977 0.86340 0.84284 0.79231 0.76748 1.21303 1.21784 1.21295 0.89671 0.94897 0.94142 0.92558 0.93891 0.92071 0.92001 0.75395 0.88692 0.89084 0.88889 0.91249 0.88342 0.88472 0.91393 0.91185 0.91630 0.91621 0.78096 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.16 0.34 -2.27 16 2 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 3 C 0.16 2.99 2.59 -67.93 -0.18 2.81 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.94 5.23 -4.04 -0.02 1.92 16 6 N -0.71 -11.58 5.39 -60.29 -0.32 -11.90 16 7 C 0.51 8.05 7.59 -10.99 -0.08 7.97 16 8 O -0.55 -10.24 14.05 5.56 0.08 -10.16 16 9 C -0.14 -1.71 5.18 -27.88 -0.14 -1.85 16 10 C -0.07 -0.81 1.87 -90.40 -0.17 -0.98 16 11 H 0.08 1.04 7.94 -51.93 -0.41 0.62 16 12 C -0.09 -1.23 5.06 -28.13 -0.14 -1.37 16 13 C -0.14 -1.64 9.80 -35.85 -0.35 -1.99 16 14 C -0.17 -1.79 9.80 -35.90 -0.35 -2.14 16 15 C -0.09 -0.82 6.12 -28.18 -0.17 -0.99 16 16 C -0.12 -1.16 5.31 -26.52 -0.14 -1.30 16 17 N -0.72 -16.24 4.51 -53.43 -0.24 -16.48 16 18 C -0.24 -5.98 7.75 -15.06 -0.12 -6.09 16 19 H 0.07 1.77 7.32 -52.48 -0.38 1.38 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.47 13.06 55.49 0.72 -25.74 16 22 Si 0.90 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.41 6.72 8.14 -40.82 -0.33 6.39 16 34 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.42 6.25 -51.93 -0.32 1.09 16 37 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 38 H 0.10 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.10 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.38 9.52 7.80 -40.82 -0.32 9.20 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -28.31 356.15 -9.17 -37.48 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -7.97 Total: 14.31 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.77 Total: -9.12 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.16 Total: -54.12 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.31 -9.17 -37.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665828484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.643 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds