Wall clock time and date at job start Fri Apr 10 2020 17:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.09000 * 109.47314 * 54.99967 * 3 2 1 5 5 C 1.52997 * 109.46646 * 174.99857 * 3 2 1 6 6 N 1.46508 * 109.46962 * 175.00266 * 5 3 2 7 7 C 1.34777 * 120.00033 * 179.97438 * 6 5 3 8 8 O 1.21277 * 119.99872 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99895 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.47127 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.64307 * 305.00417 * 10 9 7 12 12 C 1.53020 * 109.63741 * 65.42558 * 10 9 7 13 13 C 1.50165 * 110.09488 * 168.90254 * 12 10 9 14 14 C 1.29444 * 124.14684 * 343.28308 * 13 12 10 15 15 C 1.50071 * 124.07430 * 0.23900 * 14 13 12 16 16 C 1.53016 * 110.14671 * 342.86628 * 15 14 13 17 17 N 1.46495 * 109.47168 * 294.99682 * 3 2 1 18 18 C 1.36932 * 120.00087 * 84.99921 * 17 3 2 19 19 H 1.08008 * 120.00080 * 0.02562 * 18 17 3 20 20 C 1.38812 * 120.00221 * 179.97438 * 18 17 3 21 21 N 1.31621 * 120.00004 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00078 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47011 * 60.00425 * 22 20 18 24 24 H 1.48499 * 109.46940 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46911 * 299.99896 * 22 20 18 26 26 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 27 27 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 29 29 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 30 30 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 31 31 H 1.09003 * 109.47223 * 294.99671 * 5 3 2 32 32 H 1.08998 * 109.47339 * 55.00028 * 5 3 2 33 33 H 0.96995 * 119.99649 * 359.97438 * 6 5 3 34 34 H 1.08994 * 109.47348 * 300.00372 * 9 7 6 35 35 H 1.08998 * 109.46862 * 60.00226 * 9 7 6 36 36 H 1.08997 * 109.35719 * 289.32388 * 12 10 9 37 37 H 1.08999 * 109.36143 * 48.91155 * 12 10 9 38 38 H 1.08004 * 117.89244 * 163.07335 * 13 12 10 39 39 H 1.08003 * 117.96265 * 180.25814 * 14 13 12 40 40 H 1.08996 * 109.35575 * 222.66100 * 15 14 13 41 41 H 1.09002 * 109.24527 * 103.01079 * 15 14 13 42 42 H 1.09000 * 109.64609 * 289.75385 * 16 15 14 43 43 H 1.09002 * 109.81665 * 169.21945 * 16 15 14 44 44 H 0.97003 * 120.00290 * 265.00338 * 17 3 2 45 45 H 0.96997 * 120.00160 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4444 0.1258 6 7 4.0629 2.8170 0.0061 7 6 5.3855 3.0633 0.0870 8 8 6.1631 2.1488 0.2594 9 6 5.8979 4.4750 -0.0367 10 6 7.4227 4.4771 0.0904 11 1 7.7133 3.9910 1.0216 12 6 8.0385 3.7295 -1.0942 13 6 9.5231 3.9527 -1.1297 14 6 10.1312 4.8982 -0.4881 15 6 9.4380 5.9019 0.3862 16 6 7.9390 5.9216 0.0797 17 7 1.6523 2.0975 -1.2518 18 6 0.4155 2.6734 -1.3689 19 1 -0.2742 2.6451 -0.5382 20 6 0.0485 3.2944 -2.5548 21 7 0.8891 3.3293 -3.5670 22 14 -1.6385 4.0806 -2.7143 23 1 -1.7868 5.1461 -1.6906 24 1 -1.7832 4.6715 -4.0690 25 1 -2.6867 3.0488 -2.5103 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8497 1.0379 1.0961 32 1 3.9953 0.8312 -0.6658 33 1 3.4408 3.5484 -0.1314 34 1 5.6133 4.8812 -1.0073 35 1 5.4669 5.0886 0.7544 36 1 7.8320 2.6639 -0.9957 37 1 7.5984 4.0966 -2.0214 38 1 10.1211 3.2794 -1.7259 39 1 11.2042 4.9695 -0.5884 40 1 9.8573 6.8912 0.2030 41 1 9.5897 5.6332 1.4316 42 1 7.7716 6.3633 -0.9026 43 1 7.4145 6.5037 0.8375 44 1 2.2718 2.1232 -1.9978 45 1 0.6325 3.7630 -4.3958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665828484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:53 Heat of formation + Delta-G solvation = -58.265717 kcal Electronic energy + Delta-G solvation = -22164.840358 eV Core-core repulsion = 18987.791130 eV Total energy + Delta-G solvation = -3177.049228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97748 -39.21204 -38.13866 -35.16580 -34.13987 -33.65693 -31.58313 -31.49943 -29.86291 -27.88668 -25.51779 -24.26204 -23.78938 -22.18614 -21.60306 -20.84770 -19.20836 -18.84105 -17.77174 -17.16451 -16.89699 -16.59249 -16.24340 -15.75229 -15.39326 -15.12621 -14.79630 -14.60599 -14.42287 -14.16096 -13.82422 -13.72003 -13.45553 -13.16943 -13.01718 -12.87894 -12.77483 -12.72798 -12.42533 -12.33494 -12.12752 -11.86894 -11.61681 -11.60831 -11.48416 -11.32596 -10.99389 -10.89683 -10.58717 -9.94280 -9.79766 -8.96110 -7.86034 -5.13141 1.44883 1.52069 1.53098 1.58481 1.76176 2.39246 2.61461 3.47592 3.74050 3.79972 3.88876 3.92276 3.98891 4.17144 4.29904 4.39167 4.44853 4.49158 4.50628 4.57308 4.60802 4.74066 4.77891 4.81077 4.84168 4.89256 4.97994 5.07125 5.10879 5.12305 5.16021 5.21477 5.25602 5.40126 5.51363 5.53779 5.61466 5.64897 5.72384 5.81881 6.11605 6.33945 6.70023 7.36775 7.42002 8.13825 8.39047 9.36623 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.003720 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.463059 B = 7525.926590 C = 8453.114574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.059 0.941 5 C 0.123 3.877 6 N -0.715 5.715 7 C 0.505 3.495 8 O -0.583 6.583 9 C -0.133 4.133 10 C -0.064 4.064 11 H 0.065 0.935 12 C -0.093 4.093 13 C -0.167 4.167 14 C -0.160 4.160 15 C -0.091 4.091 16 C -0.113 4.113 17 N -0.727 5.727 18 C -0.218 4.218 19 H 0.080 0.920 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.959 3.041 23 H -0.278 1.278 24 H -0.304 1.304 25 H -0.284 1.284 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.410 0.590 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.719 4.023 9.819 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.002 4.002 6 N -0.366 5.366 7 C 0.294 3.706 8 O -0.464 6.464 9 C -0.172 4.172 10 C -0.083 4.083 11 H 0.083 0.917 12 C -0.130 4.130 13 C -0.185 4.185 14 C -0.178 4.178 15 C -0.127 4.127 16 C -0.151 4.151 17 N -0.368 5.368 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.263 4.263 21 N -0.619 5.619 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.231 1.231 25 H -0.211 1.211 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.246 0.754 34 H 0.118 0.882 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.075 3.437 9.997 16.814 hybrid contribution -1.090 0.297 -1.097 1.575 sum 11.986 3.734 8.900 15.389 Atomic orbital electron populations 1.21696 0.95934 1.00567 1.01814 1.21999 0.96667 0.97532 1.00907 1.20695 0.91005 0.93120 0.89487 0.92344 1.21499 0.94275 0.83388 1.01014 1.46061 1.07651 1.10291 1.72573 1.21244 0.81775 0.92438 0.75174 1.90613 1.56449 1.48054 1.51314 1.21802 0.97192 0.92544 1.05673 1.20874 0.91985 0.96812 0.98590 0.91701 1.20580 0.93309 1.00993 0.98087 1.22157 0.96074 0.99143 1.01151 1.22272 1.00166 0.96759 0.98640 1.20495 0.94478 0.98656 0.99106 1.21680 0.95903 0.94766 1.02737 1.42559 1.15768 1.66099 1.12334 1.19464 0.92531 1.25458 0.97527 0.90264 1.25359 1.00918 1.03454 0.96612 1.69799 1.36845 1.50954 1.04285 0.85424 0.81043 0.78518 0.76044 1.20368 1.23065 1.21054 0.93300 0.92926 0.93110 0.93783 0.90777 0.90604 0.93615 0.75384 0.88231 0.86548 0.91951 0.91852 0.88157 0.86834 0.89382 0.90413 0.91614 0.89818 0.79597 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 9.18 71.98 0.66 -4.15 16 2 C -0.13 -4.27 5.61 30.60 0.17 -4.10 16 3 C 0.17 5.87 2.59 44.99 0.12 5.98 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 4.07 5.23 86.38 0.45 4.52 16 6 N -0.71 -22.84 5.39 -463.05 -2.50 -25.33 16 7 C 0.51 15.86 7.59 87.66 0.66 16.53 16 8 O -0.58 -21.82 14.05 -3.02 -0.04 -21.86 16 9 C -0.13 -3.12 5.18 29.85 0.15 -2.97 16 10 C -0.06 -1.47 1.87 -10.65 -0.02 -1.49 16 11 H 0.06 1.68 7.94 -2.39 -0.02 1.66 16 12 C -0.09 -2.45 5.06 29.69 0.15 -2.30 16 13 C -0.17 -3.85 9.80 27.07 0.27 -3.58 16 14 C -0.16 -3.07 9.80 27.04 0.27 -2.80 16 15 C -0.09 -1.45 6.12 29.66 0.18 -1.27 16 16 C -0.11 -1.99 5.31 30.73 0.16 -1.82 16 17 N -0.73 -32.65 4.51 -322.94 -1.46 -34.11 16 18 C -0.22 -10.83 7.75 84.03 0.65 -10.18 16 19 H 0.08 3.78 7.32 -2.91 -0.02 3.76 16 20 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 21 N -0.97 -56.17 13.06 21.65 0.28 -55.89 16 22 Si 0.96 43.89 29.55 68.60 2.03 45.92 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H 0.05 2.00 5.99 -2.39 -0.01 1.99 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.41 13.16 8.14 -92.71 -0.75 12.41 16 34 H 0.10 2.30 8.10 -2.39 -0.02 2.28 16 35 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 2.01 6.25 -2.39 -0.01 1.99 16 37 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 38 H 0.10 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.11 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.37 18.69 7.80 -92.71 -0.72 17.97 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -61.22 356.15 2.15 -59.07 By element: Atomic # 1 Polarization: 43.70 SS G_CDS: -0.52 Total: 43.18 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.34 Total: -10.99 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -3.67 Total: -115.33 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.04 Total: -21.86 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -61.22 2.15 -59.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665828484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.805 kcal (2) G-P(sol) polarization free energy of solvation -61.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds