Wall clock time and date at job start Fri Apr 10 2020 17:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 119.99991 * 2 1 4 4 H 1.09004 * 109.47232 * 359.97438 * 3 2 1 5 5 C 1.52991 * 109.47303 * 120.00028 * 3 2 1 6 6 C 1.53001 * 109.47338 * 294.75406 * 5 3 2 7 7 C 1.53002 * 109.46929 * 240.00189 * 3 2 1 8 8 C 1.50703 * 109.46925 * 174.01396 * 7 3 2 9 9 O 1.21275 * 120.00604 * 353.87623 * 8 7 3 10 10 N 1.34785 * 119.99807 * 173.87351 * 8 7 3 11 11 C 1.46496 * 120.00012 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47428 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.47082 * 64.99516 * 12 11 10 14 14 N 1.46508 * 109.46684 * 305.00107 * 12 11 10 15 15 C 1.36936 * 119.99422 * 154.99712 * 14 12 11 16 16 H 1.07995 * 120.00863 * 0.02562 * 15 14 12 17 17 C 1.38820 * 119.99478 * 179.97438 * 15 14 12 18 18 N 1.31618 * 119.99593 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00143 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47167 * 89.99380 * 19 17 15 21 21 H 1.48497 * 109.47180 * 209.99861 * 19 17 15 22 22 H 1.48501 * 109.47060 * 329.99850 * 19 17 15 23 23 C 1.52993 * 109.47294 * 184.99993 * 12 11 10 24 24 C 1.53004 * 117.49707 * 248.74313 * 23 12 11 25 25 C 1.53006 * 117.49731 * 180.08871 * 23 12 11 26 26 H 1.08008 * 120.00441 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00197 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99630 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47498 * 174.75406 * 5 3 2 30 30 H 1.09000 * 109.47041 * 54.75482 * 5 3 2 31 31 H 1.08999 * 109.47413 * 175.25735 * 6 5 3 32 32 H 1.08997 * 109.46655 * 55.26224 * 6 5 3 33 33 H 1.09001 * 109.47075 * 295.26265 * 6 5 3 34 34 H 1.09000 * 109.46896 * 294.01282 * 7 3 2 35 35 H 1.09001 * 109.47344 * 54.01777 * 7 3 2 36 36 H 0.97005 * 120.00028 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47013 * 300.00049 * 11 10 8 38 38 H 1.08997 * 109.47198 * 59.99743 * 11 10 8 39 39 H 0.96989 * 119.99971 * 334.99279 * 14 12 11 40 40 H 0.97003 * 119.99684 * 180.02562 * 18 17 15 41 41 H 1.08993 * 115.55137 * 34.41623 * 23 12 11 42 42 H 1.08998 * 117.49938 * 0.02562 * 24 23 12 43 43 H 1.09000 * 117.49505 * 145.02437 * 24 23 12 44 44 H 1.09004 * 117.49486 * 214.97958 * 25 23 12 45 45 H 1.08998 * 117.49838 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9430 1.3861 1.2491 6 6 2.0563 1.4369 2.4950 7 6 2.9430 1.3861 -1.2493 8 6 3.5829 2.7484 -1.3256 9 8 3.2730 3.6094 -0.5298 10 7 4.4996 3.0099 -2.2784 11 6 5.1221 4.3340 -2.3523 12 6 6.1183 4.3652 -3.5131 13 1 5.5827 4.2453 -4.4549 14 7 7.0834 3.2739 -3.3577 15 6 7.7270 2.7679 -4.4553 16 1 7.5237 3.1734 -5.4354 17 6 8.6418 1.7341 -4.3081 18 7 9.2609 1.2481 -5.3630 19 14 8.9942 1.0331 -2.6130 20 1 8.0593 -0.0871 -2.3365 21 1 10.3921 0.5347 -2.5642 22 1 8.8110 2.0944 -1.5905 23 6 6.8584 5.7042 -3.5140 24 6 6.5650 6.6727 -4.6617 25 6 7.9039 5.9327 -4.6076 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 3.5571 2.2856 1.2034 30 1 3.5874 0.5083 1.2974 31 1 2.6815 1.4097 3.3874 32 1 1.3831 0.5797 2.4968 33 1 1.4725 2.3574 2.4882 34 1 3.7191 0.6225 -1.1973 35 1 2.3307 1.2221 -2.1361 36 1 4.7478 2.3211 -2.9148 37 1 4.3523 5.0888 -2.5132 38 1 5.6454 4.5420 -1.4191 39 1 7.2663 2.9099 -2.4775 40 1 9.8999 0.5255 -5.2602 41 1 7.0557 6.1330 -2.5316 42 1 5.8444 6.3560 -5.4157 43 1 6.5697 7.7387 -4.4342 44 1 8.7889 6.5122 -4.3445 45 1 8.0647 5.1289 -5.3260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690165021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:58 Heat of formation + Delta-G solvation = 0.252618 kcal Electronic energy + Delta-G solvation = -22213.452774 eV Core-core repulsion = 19038.941092 eV Total energy + Delta-G solvation = -3174.511682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76891 -37.81859 -36.71199 -34.70792 -33.45442 -31.88048 -31.39427 -30.42160 -28.32699 -24.92571 -23.28694 -22.23875 -21.78960 -21.67047 -20.26526 -19.71748 -19.55243 -17.74907 -16.66949 -15.81505 -15.54716 -15.16885 -14.90562 -14.73888 -14.40845 -14.11260 -13.90541 -13.53917 -13.16726 -13.07187 -12.73895 -12.64778 -12.30693 -11.93250 -11.53518 -11.40612 -11.27123 -11.18092 -10.96388 -10.90818 -10.76918 -10.74148 -10.59556 -10.29552 -9.76020 -9.70691 -9.54618 -9.43956 -9.34200 -9.04154 -8.73255 -7.38972 -5.85365 -3.21557 2.14166 2.87091 3.30101 3.35501 3.39910 3.50027 4.38626 4.51254 4.67638 4.68336 4.99401 5.09544 5.13545 5.19503 5.25683 5.31668 5.40598 5.44019 5.48843 5.54401 5.65776 5.67595 5.72242 5.74883 5.87748 5.90563 5.93910 5.97681 6.05155 6.11986 6.19339 6.27457 6.32829 6.47381 6.51473 6.54389 6.67771 6.71944 6.80625 6.97716 7.83122 7.89158 8.32653 8.48630 9.10370 9.82956 10.02480 11.32358 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015265 B = 0.004549 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.775869 B = 6153.373437 C = 7233.481334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C -0.045 4.045 4 H 0.083 0.917 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.137 4.137 8 C 0.510 3.490 9 O -0.550 6.550 10 N -0.719 5.719 11 C 0.116 3.884 12 C 0.198 3.802 13 H 0.064 0.936 14 N -0.742 5.742 15 C -0.242 4.242 16 H 0.092 0.908 17 C 0.009 3.991 18 N -0.931 5.931 19 Si 0.880 3.120 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.164 4.164 24 C -0.193 4.193 25 C -0.155 4.155 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.410 0.590 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 1.285 8.936 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.160 4.160 3 C -0.064 4.064 4 H 0.101 0.899 5 C -0.158 4.158 6 C -0.205 4.205 7 C -0.177 4.177 8 C 0.296 3.704 9 O -0.429 6.429 10 N -0.371 5.371 11 C -0.008 4.008 12 C 0.089 3.911 13 H 0.081 0.919 14 N -0.384 5.384 15 C -0.372 4.372 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.578 5.578 19 Si 0.710 3.290 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.186 4.186 24 C -0.231 4.231 25 C -0.192 4.192 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.246 0.754 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.057 1.830 9.252 16.928 hybrid contribution 0.724 -0.890 0.839 1.422 sum -13.333 0.939 10.092 16.748 Atomic orbital electron populations 1.23833 0.95927 1.01673 1.01832 1.22966 0.95931 0.98161 0.98933 1.20148 0.96934 0.95580 0.93734 0.89860 1.21606 0.98021 1.02681 0.93473 1.21731 0.99750 1.01578 0.97403 1.21710 1.00419 0.95414 1.00160 1.20613 0.79311 0.89925 0.80514 1.90649 1.62999 1.48296 1.40944 1.46078 1.41601 1.15809 1.33590 1.21618 0.95621 0.84040 0.99560 1.20023 0.88719 0.86547 0.95855 0.91857 1.42836 1.49380 1.39410 1.06821 1.19015 1.17356 1.12926 0.87878 0.89006 1.24638 0.98890 0.98887 0.96285 1.69690 1.30897 1.29487 1.27723 0.86631 0.77699 0.79143 0.85510 1.21121 1.21818 1.20366 1.22952 1.04271 0.97572 0.93765 1.22952 1.01090 0.96881 1.02181 1.22850 0.91420 1.02337 1.02559 0.88643 0.88653 0.87399 0.90266 0.92485 0.93154 0.92915 0.92846 0.88845 0.88710 0.75418 0.91346 0.91969 0.80495 0.93010 0.89190 0.89409 0.90048 0.90211 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.72 14.32 29.02 0.42 -1.31 16 2 C -0.14 -1.36 7.69 -36.03 -0.28 -1.64 16 3 C -0.05 -0.51 1.79 -91.78 -0.16 -0.67 16 4 H 0.08 1.03 7.47 -51.93 -0.39 0.65 16 5 C -0.12 -1.42 5.19 -26.74 -0.14 -1.56 16 6 C -0.15 -1.54 9.80 37.16 0.36 -1.18 16 7 C -0.14 -1.59 5.15 -27.88 -0.14 -1.73 16 8 C 0.51 7.54 7.38 -10.98 -0.08 7.46 16 9 O -0.55 -9.59 14.31 5.56 0.08 -9.52 16 10 N -0.72 -10.83 5.39 -60.30 -0.32 -11.15 16 11 C 0.12 1.83 5.21 -4.04 -0.02 1.81 16 12 C 0.20 3.47 2.70 -67.93 -0.18 3.29 16 13 H 0.06 1.14 7.84 -51.93 -0.41 0.74 16 14 N -0.74 -15.73 4.34 -53.42 -0.23 -15.96 16 15 C -0.24 -6.16 9.11 -15.06 -0.14 -6.30 16 16 H 0.09 2.52 7.14 -52.49 -0.37 2.14 16 17 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 18 N -0.93 -27.71 13.97 55.49 0.78 -26.94 16 19 Si 0.88 21.10 27.74 -169.99 -4.71 16.39 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 23 C -0.16 -2.74 5.36 -90.62 -0.49 -3.22 16 24 C -0.19 -2.88 10.18 -26.69 -0.27 -3.15 16 25 C -0.15 -2.72 9.78 -26.69 -0.26 -2.98 16 26 H 0.10 0.83 7.83 -52.48 -0.41 0.42 16 27 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.11 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.08 1.12 6.19 -51.93 -0.32 0.80 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.51 7.24 -51.93 -0.38 0.13 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.41 6.14 8.14 -40.82 -0.33 5.80 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.36 7.83 5.66 -40.82 -0.23 7.60 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 42 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.11 2.28 6.23 -51.93 -0.32 1.95 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -29.30 363.25 -8.25 -37.55 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -7.82 Total: 15.18 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.48 Total: -11.03 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.22 Total: -54.04 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.30 -8.25 -37.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690165021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.801 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds