Wall clock time and date at job start Fri Apr 10 2020 17:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 119.99991 * 2 1 4 4 H 1.09004 * 109.47232 * 359.97438 * 3 2 1 5 5 C 1.52991 * 109.47303 * 120.00028 * 3 2 1 6 6 C 1.53001 * 109.47338 * 294.75406 * 5 3 2 7 7 C 1.53002 * 109.46929 * 240.00189 * 3 2 1 8 8 C 1.50703 * 109.46925 * 174.01396 * 7 3 2 9 9 O 1.21275 * 120.00604 * 353.87623 * 8 7 3 10 10 N 1.34785 * 119.99807 * 173.87351 * 8 7 3 11 11 C 1.46496 * 120.00012 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47428 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.47082 * 64.99516 * 12 11 10 14 14 N 1.46508 * 109.46684 * 305.00107 * 12 11 10 15 15 C 1.36936 * 119.99422 * 154.99712 * 14 12 11 16 16 H 1.07995 * 120.00863 * 0.02562 * 15 14 12 17 17 C 1.38820 * 119.99478 * 179.97438 * 15 14 12 18 18 N 1.31618 * 119.99593 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00143 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47167 * 89.99380 * 19 17 15 21 21 H 1.48497 * 109.47180 * 209.99861 * 19 17 15 22 22 H 1.48501 * 109.47060 * 329.99850 * 19 17 15 23 23 C 1.52993 * 109.47294 * 184.99993 * 12 11 10 24 24 C 1.53004 * 117.49707 * 248.74313 * 23 12 11 25 25 C 1.53006 * 117.49731 * 180.08871 * 23 12 11 26 26 H 1.08008 * 120.00441 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00197 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99630 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47498 * 174.75406 * 5 3 2 30 30 H 1.09000 * 109.47041 * 54.75482 * 5 3 2 31 31 H 1.08999 * 109.47413 * 175.25735 * 6 5 3 32 32 H 1.08997 * 109.46655 * 55.26224 * 6 5 3 33 33 H 1.09001 * 109.47075 * 295.26265 * 6 5 3 34 34 H 1.09000 * 109.46896 * 294.01282 * 7 3 2 35 35 H 1.09001 * 109.47344 * 54.01777 * 7 3 2 36 36 H 0.97005 * 120.00028 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47013 * 300.00049 * 11 10 8 38 38 H 1.08997 * 109.47198 * 59.99743 * 11 10 8 39 39 H 0.96989 * 119.99971 * 334.99279 * 14 12 11 40 40 H 0.97003 * 119.99684 * 180.02562 * 18 17 15 41 41 H 1.08993 * 115.55137 * 34.41623 * 23 12 11 42 42 H 1.08998 * 117.49938 * 0.02562 * 24 23 12 43 43 H 1.09000 * 117.49505 * 145.02437 * 24 23 12 44 44 H 1.09004 * 117.49486 * 214.97958 * 25 23 12 45 45 H 1.08998 * 117.49838 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9430 1.3861 1.2491 6 6 2.0563 1.4369 2.4950 7 6 2.9430 1.3861 -1.2493 8 6 3.5829 2.7484 -1.3256 9 8 3.2730 3.6094 -0.5298 10 7 4.4996 3.0099 -2.2784 11 6 5.1221 4.3340 -2.3523 12 6 6.1183 4.3652 -3.5131 13 1 5.5827 4.2453 -4.4549 14 7 7.0834 3.2739 -3.3577 15 6 7.7270 2.7679 -4.4553 16 1 7.5237 3.1734 -5.4354 17 6 8.6418 1.7341 -4.3081 18 7 9.2609 1.2481 -5.3630 19 14 8.9942 1.0331 -2.6130 20 1 8.0593 -0.0871 -2.3365 21 1 10.3921 0.5347 -2.5642 22 1 8.8110 2.0944 -1.5905 23 6 6.8584 5.7042 -3.5140 24 6 6.5650 6.6727 -4.6617 25 6 7.9039 5.9327 -4.6076 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 3.5571 2.2856 1.2034 30 1 3.5874 0.5083 1.2974 31 1 2.6815 1.4097 3.3874 32 1 1.3831 0.5797 2.4968 33 1 1.4725 2.3574 2.4882 34 1 3.7191 0.6225 -1.1973 35 1 2.3307 1.2221 -2.1361 36 1 4.7478 2.3211 -2.9148 37 1 4.3523 5.0888 -2.5132 38 1 5.6454 4.5420 -1.4191 39 1 7.2663 2.9099 -2.4775 40 1 9.8999 0.5255 -5.2602 41 1 7.0557 6.1330 -2.5316 42 1 5.8444 6.3560 -5.4157 43 1 6.5697 7.7387 -4.4342 44 1 8.7889 6.5122 -4.3445 45 1 8.0647 5.1289 -5.3260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690165021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:57 Heat of formation + Delta-G solvation = -16.970461 kcal Electronic energy + Delta-G solvation = -22214.199623 eV Core-core repulsion = 19038.941092 eV Total energy + Delta-G solvation = -3175.258531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.94498 -39.20332 -37.66937 -36.09541 -35.14791 -33.13908 -32.65430 -31.56044 -29.76758 -26.06808 -24.90360 -23.61502 -23.04671 -22.65893 -21.58789 -20.94989 -20.47864 -19.58146 -17.87026 -17.07739 -16.97318 -16.44098 -16.07668 -15.88202 -15.61579 -15.39405 -15.30721 -14.70153 -14.57131 -14.34575 -14.22708 -13.70133 -13.46864 -13.09848 -12.98246 -12.77094 -12.73233 -12.37063 -12.28346 -12.10475 -12.09270 -12.01988 -11.65731 -11.63675 -11.50158 -11.03673 -11.01011 -10.87937 -10.67418 -10.18655 -9.98708 -9.31320 -7.96355 -5.28894 1.39431 1.42018 1.43321 1.48183 1.71239 2.33661 2.51301 2.99336 3.38741 3.65318 3.74870 3.81659 3.84412 4.11328 4.13140 4.23438 4.33437 4.34588 4.41207 4.43028 4.53635 4.57003 4.62573 4.65456 4.78089 4.86003 4.89806 4.97286 5.04343 5.10382 5.12377 5.16516 5.19764 5.39119 5.40612 5.44035 5.48369 5.56389 5.79146 5.85357 5.96014 6.25832 6.63154 7.11885 7.30625 7.86154 8.05586 9.24771 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015265 B = 0.004549 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.775869 B = 6153.373437 C = 7233.481334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C -0.041 4.041 4 H 0.068 0.932 5 C -0.121 4.121 6 C -0.144 4.144 7 C -0.133 4.133 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.720 5.720 11 C 0.126 3.874 12 C 0.200 3.800 13 H 0.058 0.942 14 N -0.741 5.741 15 C -0.208 4.208 16 H 0.065 0.935 17 C -0.056 4.056 18 N -0.982 5.982 19 Si 0.941 3.059 20 H -0.274 1.274 21 H -0.306 1.306 22 H -0.263 1.263 23 C -0.170 4.170 24 C -0.162 4.162 25 C -0.177 4.177 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.411 0.589 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.363 0.637 40 H 0.254 0.746 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.635 1.432 10.411 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.169 4.169 3 C -0.060 4.060 4 H 0.086 0.914 5 C -0.158 4.158 6 C -0.201 4.201 7 C -0.173 4.173 8 C 0.297 3.703 9 O -0.458 6.458 10 N -0.372 5.372 11 C 0.002 3.998 12 C 0.092 3.908 13 H 0.076 0.924 14 N -0.384 5.384 15 C -0.339 4.339 16 H 0.083 0.917 17 C -0.248 4.248 18 N -0.633 5.633 19 Si 0.771 3.229 20 H -0.200 1.200 21 H -0.233 1.233 22 H -0.188 1.188 23 C -0.192 4.192 24 C -0.199 4.199 25 C -0.214 4.214 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.196 0.804 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.127 0.873 44 H 0.106 0.894 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.803 2.012 10.752 19.220 hybrid contribution 1.164 -0.820 0.325 1.460 sum -14.640 1.192 11.078 18.397 Atomic orbital electron populations 1.23997 0.95757 1.02418 1.00299 1.22899 0.96140 0.97528 1.00288 1.20072 0.96529 0.96148 0.93202 0.91372 1.21579 0.98162 1.01552 0.94521 1.21696 0.99696 1.01682 0.97004 1.21764 1.00824 0.93474 1.01202 1.21151 0.78744 0.90813 0.79617 1.90639 1.63825 1.49504 1.41880 1.46109 1.41729 1.15543 1.33812 1.21460 0.95281 0.84913 0.98178 1.20127 0.88252 0.85896 0.96514 0.92353 1.42792 1.49593 1.40429 1.05550 1.18925 1.15729 1.11206 0.88013 0.91734 1.25280 0.99799 1.00203 0.99508 1.69856 1.32619 1.30816 1.30055 0.85619 0.76687 0.78925 0.81715 1.20038 1.23341 1.18791 1.22911 1.03881 0.97689 0.94681 1.23023 0.98525 0.97906 1.00466 1.22725 0.93269 1.02647 1.02770 0.88811 0.87026 0.86337 0.92992 0.91821 0.92663 0.91827 0.93536 0.87759 0.86961 0.75302 0.90183 0.92507 0.80373 0.93660 0.87978 0.88916 0.87261 0.89426 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 14.32 67.78 0.97 -1.86 16 2 C -0.15 -2.52 7.69 25.65 0.20 -2.33 16 3 C -0.04 -0.85 1.79 -11.54 -0.02 -0.87 16 4 H 0.07 1.63 7.47 -2.38 -0.02 1.61 16 5 C -0.12 -2.71 5.19 30.59 0.16 -2.55 16 6 C -0.14 -2.81 9.80 71.98 0.71 -2.10 16 7 C -0.13 -2.83 5.15 29.85 0.15 -2.68 16 8 C 0.51 14.34 7.38 87.66 0.65 14.98 16 9 O -0.58 -19.67 14.31 -3.01 -0.04 -19.71 16 10 N -0.72 -20.58 5.39 -463.07 -2.50 -23.07 16 11 C 0.13 3.76 5.21 86.38 0.45 4.21 16 12 C 0.20 6.76 2.70 44.99 0.12 6.88 16 13 H 0.06 2.05 7.84 -2.38 -0.02 2.03 16 14 N -0.74 -30.79 4.34 -322.93 -1.40 -32.19 16 15 C -0.21 -10.68 9.11 84.04 0.77 -9.92 16 16 H 0.06 3.66 7.14 -2.91 -0.02 3.64 16 17 C -0.06 -3.12 5.50 84.86 0.47 -2.66 16 18 N -0.98 -60.18 13.97 21.65 0.30 -59.88 16 19 Si 0.94 43.67 27.74 68.60 1.90 45.57 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 22 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 23 C -0.17 -5.39 5.36 -10.79 -0.06 -5.45 16 24 C -0.16 -4.41 10.18 30.62 0.31 -4.10 16 25 C -0.18 -6.12 9.78 30.62 0.30 -5.82 16 26 H 0.09 1.44 7.83 -2.91 -0.02 1.41 16 27 H 0.11 1.33 8.06 -2.91 -0.02 1.30 16 28 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 29 H 0.05 1.45 6.19 -2.38 -0.01 1.44 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.10 7.24 -2.39 -0.02 1.08 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.41 11.67 8.14 -92.70 -0.75 10.91 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.36 15.11 5.66 -92.72 -0.52 14.58 16 40 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.10 3.02 8.11 -2.39 -0.02 3.00 16 42 H 0.09 2.46 8.05 -2.39 -0.02 2.44 16 43 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 45 H 0.07 3.12 6.23 -2.39 -0.01 3.11 16 Total: -1.00 -63.87 363.25 3.06 -60.81 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -0.38 Total: 42.73 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 5.17 Total: -14.25 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -3.59 Total: -115.15 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.90 Total: 45.57 kcal Total: -63.87 3.06 -60.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690165021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.838 kcal (2) G-P(sol) polarization free energy of solvation -63.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds