Wall clock time and date at job start Fri Apr 10 2020 17:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00511 * 2 1 4 4 H 1.09008 * 109.46797 * 0.02562 * 3 2 1 5 5 C 1.52994 * 109.47409 * 240.00304 * 3 2 1 6 6 C 1.53003 * 109.47265 * 64.99419 * 5 3 2 7 7 C 1.52997 * 109.47135 * 119.99776 * 3 2 1 8 8 C 1.50701 * 109.47212 * 295.00216 * 7 3 2 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 3 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 3 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46983 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47325 * 65.00139 * 12 11 10 14 14 N 1.46500 * 109.47170 * 305.00174 * 12 11 10 15 15 C 1.36939 * 120.00440 * 154.99825 * 14 12 11 16 16 H 1.08007 * 119.99440 * 0.02562 * 15 14 12 17 17 C 1.38805 * 120.00308 * 179.97438 * 15 14 12 18 18 N 1.31618 * 120.00179 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00108 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47001 * 60.00104 * 19 17 15 21 21 H 1.48501 * 109.47117 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46816 * 300.00357 * 19 17 15 23 23 C 1.53006 * 109.47380 * 185.00040 * 12 11 10 24 24 C 1.52997 * 117.49906 * 248.74477 * 23 12 11 25 25 C 1.52995 * 117.49774 * 180.08590 * 23 12 11 26 26 H 1.07997 * 120.00440 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99586 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00042 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47698 * 184.99747 * 5 3 2 30 30 H 1.09009 * 109.47010 * 304.99752 * 5 3 2 31 31 H 1.09000 * 109.46720 * 60.00379 * 6 5 3 32 32 H 1.08998 * 109.47049 * 180.02562 * 6 5 3 33 33 H 1.08992 * 109.47227 * 299.99948 * 6 5 3 34 34 H 1.09002 * 109.47153 * 175.00218 * 7 3 2 35 35 H 1.09001 * 109.46832 * 55.00409 * 7 3 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47487 * 300.00114 * 11 10 8 38 38 H 1.09002 * 109.47182 * 60.00342 * 11 10 8 39 39 H 0.97006 * 119.99969 * 334.99659 * 14 12 11 40 40 H 0.97000 * 120.00173 * 179.97438 * 18 17 15 41 41 H 1.08998 * 115.54789 * 34.41685 * 23 12 11 42 42 H 1.08999 * 117.49834 * 0.02562 * 24 23 12 43 43 H 1.09003 * 117.49691 * 145.01926 * 24 23 12 44 44 H 1.09007 * 117.49974 * 214.98222 * 25 23 12 45 45 H 1.08997 * 117.50205 * 0.02562 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9432 1.3861 -1.2492 6 6 2.0565 1.4307 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0698 1.4300 2.4766 9 8 0.8627 1.3991 2.3632 10 7 2.6302 1.5026 3.7002 11 6 1.7812 1.5448 4.8933 12 6 2.6607 1.6259 6.1425 13 1 3.2054 2.5701 6.1427 14 7 3.6131 0.5127 6.1423 15 6 4.7964 0.6238 6.8225 16 1 5.0274 1.5321 7.3595 17 6 5.6986 -0.4311 6.8227 18 7 5.4170 -1.5380 6.1687 19 14 7.3125 -0.2797 7.7512 20 1 7.0350 -0.0447 9.1910 21 1 8.0928 -1.5336 7.5952 22 1 8.0928 0.8596 7.2050 23 6 1.7811 1.5443 7.3918 24 6 1.6586 2.8030 8.2529 25 6 2.4783 1.6106 8.7521 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.5541 2.2878 -1.2056 30 1 3.5906 0.5104 -1.2951 31 1 1.4091 2.3064 -2.4494 32 1 2.6831 1.4880 -3.3853 33 1 1.4456 0.5291 -2.5390 34 1 3.5541 2.2877 1.2056 35 1 3.5906 0.5104 1.2951 36 1 3.5956 1.5270 3.7908 37 1 1.1337 2.4205 4.8478 38 1 1.1703 0.6431 4.9365 39 1 3.4056 -0.3031 5.6603 40 1 6.0476 -2.2751 6.1686 41 1 0.9025 0.9048 7.3072 42 1 2.2042 3.6893 7.9292 43 1 0.6993 2.9914 8.7351 44 1 2.0580 1.0150 9.5626 45 1 3.5634 1.7127 8.7571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690165024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:06 Heat of formation + Delta-G solvation = -17.953715 kcal Electronic energy + Delta-G solvation = -22149.137739 eV Core-core repulsion = 18973.836571 eV Total energy + Delta-G solvation = -3175.301168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80282 -39.09491 -37.61040 -35.98975 -35.06747 -32.81280 -32.56009 -31.36159 -29.44289 -26.09475 -25.15215 -23.55934 -23.02112 -22.46963 -21.51379 -20.86535 -20.38489 -19.22800 -17.80278 -17.01625 -16.82818 -16.46740 -16.04094 -15.81077 -15.60094 -15.23650 -14.96054 -14.92571 -14.62318 -14.15806 -14.04374 -13.58323 -12.99722 -12.95773 -12.91563 -12.72691 -12.64439 -12.41427 -12.24660 -12.13061 -12.01745 -12.01069 -11.71691 -11.65053 -11.33848 -11.02425 -10.97824 -10.80077 -10.68915 -10.02914 -9.84395 -8.98115 -7.87043 -5.14609 1.51242 1.52408 1.56986 1.57740 1.82750 2.40212 2.59655 3.08258 3.49523 3.82023 3.86138 3.89774 3.97261 4.01692 4.18155 4.36809 4.39097 4.40844 4.43846 4.48056 4.58807 4.63158 4.69313 4.72470 4.83690 4.89703 4.92075 5.03533 5.09714 5.10104 5.15826 5.20126 5.21252 5.40178 5.42401 5.48121 5.49223 5.62153 5.64249 5.86818 6.07776 6.32390 6.73140 7.40708 7.40931 8.11987 8.37798 9.35526 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.004198 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.566326 B = 6668.500096 C = 7890.084452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.152 4.152 3 C -0.039 4.039 4 H 0.067 0.933 5 C -0.113 4.113 6 C -0.149 4.149 7 C -0.131 4.131 8 C 0.504 3.496 9 O -0.575 6.575 10 N -0.717 5.717 11 C 0.131 3.869 12 C 0.198 3.802 13 H 0.057 0.943 14 N -0.722 5.722 15 C -0.220 4.220 16 H 0.076 0.924 17 C -0.068 4.068 18 N -0.967 5.967 19 Si 0.959 3.041 20 H -0.284 1.284 21 H -0.303 1.303 22 H -0.277 1.277 23 C -0.174 4.174 24 C -0.162 4.162 25 C -0.174 4.174 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.409 0.591 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.372 0.628 40 H 0.247 0.753 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.760 8.697 -10.654 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.170 4.170 3 C -0.058 4.058 4 H 0.086 0.914 5 C -0.150 4.150 6 C -0.207 4.207 7 C -0.170 4.170 8 C 0.292 3.708 9 O -0.455 6.455 10 N -0.368 5.368 11 C 0.006 3.994 12 C 0.089 3.911 13 H 0.075 0.925 14 N -0.362 5.362 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.260 4.260 18 N -0.618 5.618 19 Si 0.790 3.210 20 H -0.211 1.211 21 H -0.230 1.230 22 H -0.204 1.204 23 C -0.196 4.196 24 C -0.199 4.199 25 C -0.211 4.211 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.118 0.882 36 H 0.245 0.755 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.204 0.796 40 H 0.056 0.944 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.459 8.756 -10.635 15.215 hybrid contribution 1.136 -0.907 0.832 1.675 sum -5.323 7.849 -9.803 13.640 Atomic orbital electron populations 1.23683 0.96241 1.01052 1.00577 1.22841 0.96083 0.97951 1.00086 1.20120 0.96443 0.95790 0.93399 0.91427 1.21531 0.97658 1.02911 0.92908 1.21747 0.99840 1.01636 0.97451 1.21756 0.98404 1.05840 0.91034 1.21222 0.89105 0.75114 0.85404 1.90650 1.16224 1.51389 1.87277 1.46047 1.11233 1.74103 1.05457 1.21367 0.92896 1.00984 0.84187 1.20134 0.88849 0.91634 0.90458 0.92519 1.42540 1.17410 1.15449 1.60768 1.19420 0.93917 0.99025 1.22840 0.90589 1.25342 1.01738 0.96426 1.02543 1.69798 1.37520 1.05838 1.48598 0.85423 0.80749 0.76171 0.78667 1.21082 1.22958 1.20357 1.22941 1.01206 1.01692 0.93720 1.23029 1.01861 0.91817 1.03214 1.22729 0.99101 1.02263 0.97017 0.88840 0.89486 0.87844 0.90466 0.91341 0.92991 0.91713 0.93216 0.86583 0.88206 0.75509 0.90709 0.93728 0.79577 0.94391 0.89093 0.88527 0.87601 0.89686 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.69 13.22 67.78 0.90 -3.79 16 2 C -0.15 -3.82 6.76 25.65 0.17 -3.65 16 3 C -0.04 -0.86 1.82 -11.54 -0.02 -0.88 16 4 H 0.07 1.68 7.60 -2.38 -0.02 1.66 16 5 C -0.11 -1.92 5.39 30.59 0.16 -1.75 16 6 C -0.15 -2.41 9.73 71.98 0.70 -1.71 16 7 C -0.13 -3.05 5.16 29.85 0.15 -2.89 16 8 C 0.50 15.74 7.58 87.66 0.66 16.40 16 9 O -0.58 -21.18 14.17 -3.03 -0.04 -21.23 16 10 N -0.72 -22.99 5.39 -463.06 -2.49 -25.49 16 11 C 0.13 4.37 5.22 86.38 0.45 4.83 16 12 C 0.20 7.13 2.70 44.99 0.12 7.25 16 13 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 14 N -0.72 -32.70 4.54 -322.93 -1.47 -34.17 16 15 C -0.22 -11.03 8.63 84.03 0.73 -10.31 16 16 H 0.08 3.67 6.91 -2.91 -0.02 3.65 16 17 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 18 N -0.97 -56.18 13.06 21.65 0.28 -55.90 16 19 Si 0.96 43.98 29.55 68.60 2.03 46.00 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 C -0.17 -5.84 5.36 -10.79 -0.06 -5.90 16 24 C -0.16 -4.44 10.18 30.62 0.31 -4.12 16 25 C -0.17 -5.93 9.78 30.62 0.30 -5.63 16 26 H 0.09 2.27 8.06 -2.91 -0.02 2.24 16 27 H 0.09 2.37 7.83 -2.91 -0.02 2.35 16 28 H 0.10 2.53 8.06 -2.91 -0.02 2.50 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.87 7.38 -2.39 -0.02 0.85 16 34 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 13.20 8.14 -92.71 -0.75 12.45 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.37 18.84 7.80 -92.70 -0.72 18.12 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 42 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 43 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 45 H 0.08 3.16 6.23 -2.39 -0.01 3.14 16 Total: -1.00 -60.83 366.77 2.84 -58.00 By element: Atomic # 1 Polarization: 48.65 SS G_CDS: -0.52 Total: 48.13 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 5.05 Total: -15.35 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.68 Total: -115.56 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.04 Total: -21.23 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -60.83 2.84 -58.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690165024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.044 kcal (2) G-P(sol) polarization free energy of solvation -60.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds