Wall clock time and date at job start Fri Apr 10 2020 17:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 N 1.46504 * 109.46822 * 299.99893 * 3 2 1 5 5 C 1.36939 * 119.99634 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00204 * 0.02562 * 5 4 3 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 3 8 8 N 1.31622 * 119.99871 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00163 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47045 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47567 * 119.99573 * 9 7 5 12 12 H 1.48502 * 109.47233 * 239.99891 * 9 7 5 13 13 N 1.46496 * 109.47112 * 239.99924 * 2 1 3 14 14 C 1.34783 * 119.99720 * 175.38502 * 13 2 1 15 15 O 1.21279 * 120.00001 * 355.82996 * 14 13 2 16 16 C 1.50698 * 119.99751 * 175.83260 * 14 13 2 17 17 C 1.54967 * 110.92560 * 66.53761 * 16 14 13 18 18 C 1.54267 * 104.16113 * 156.29305 * 17 16 14 19 19 C 1.53880 * 106.63877 * 336.44686 * 18 17 16 20 20 C 1.54264 * 106.60032 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.47116 * 119.99742 * 2 1 3 22 22 C 1.52998 * 117.50032 * 121.76638 * 21 2 1 23 23 C 1.52999 * 60.00259 * 252.50958 * 22 21 2 24 24 H 1.09005 * 109.46461 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47421 * 299.99449 * 1 2 3 26 26 H 1.08994 * 109.47138 * 60.00621 * 1 2 3 27 27 H 1.09002 * 109.47271 * 59.99788 * 3 2 1 28 28 H 1.08999 * 109.46759 * 179.97438 * 3 2 1 29 29 H 0.96997 * 119.99835 * 0.02562 * 4 3 2 30 30 H 0.96994 * 119.99828 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00313 * 355.38600 * 13 2 1 32 32 H 1.09000 * 110.67516 * 303.23288 * 16 14 13 33 33 H 1.09000 * 110.47504 * 37.64634 * 17 16 14 34 34 H 1.08997 * 110.53033 * 274.97318 * 17 16 14 35 35 H 1.09001 * 110.03473 * 217.14131 * 18 17 16 36 36 H 1.09000 * 110.03246 * 95.75240 * 18 17 16 37 37 H 1.09000 * 110.03008 * 119.25904 * 19 18 17 38 38 H 1.08997 * 110.03185 * 240.63819 * 19 18 17 39 39 H 1.09001 * 110.48706 * 142.29049 * 20 19 18 40 40 H 1.09006 * 110.48391 * 264.79838 * 20 19 18 41 41 H 1.09002 * 115.55325 * 267.47024 * 21 2 1 42 42 H 1.09007 * 117.49828 * 359.97438 * 22 21 2 43 43 H 1.08997 * 117.50329 * 145.01637 * 22 21 2 44 44 H 1.09001 * 117.49912 * 252.51280 * 23 22 21 45 45 H 1.08992 * 117.50200 * 107.48480 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8819 3.4443 -1.4127 6 1 2.5027 3.9692 -0.7018 7 6 1.4187 4.0988 -2.5458 8 7 0.6625 3.4589 -3.4124 9 14 1.8699 5.8871 -2.8415 10 1 2.7236 6.3729 -1.7277 11 1 2.6119 6.0053 -4.1223 12 1 0.6324 6.7052 -2.9091 13 7 2.0183 -0.6906 -1.1961 14 6 3.3399 -0.7330 -1.4574 15 8 4.1184 -0.1360 -0.7445 16 6 3.8500 -1.5222 -2.6355 17 6 3.3796 -0.8908 -3.9702 18 6 4.4159 -1.3777 -5.0040 19 6 5.6952 -1.7173 -4.2192 20 6 5.3927 -1.4243 -2.7352 21 6 2.0400 -0.7212 1.2493 22 6 2.9491 -1.9344 1.0430 23 6 1.5080 -2.1303 1.5182 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4425 0.0005 29 1 0.9936 1.6617 -1.8345 30 1 0.3392 3.9161 -4.2044 31 1 1.3906 -1.1173 -1.8001 32 1 3.5325 -2.5628 -2.5682 33 1 3.3909 0.1971 -3.9022 34 1 2.3834 -1.2474 -4.2316 35 1 4.6203 -0.5888 -5.7279 36 1 4.0446 -2.2660 -5.5150 37 1 5.9442 -2.7705 -4.3487 38 1 6.5206 -1.0938 -4.5629 39 1 5.8644 -2.1700 -2.0953 40 1 5.7316 -0.4236 -2.4671 41 1 2.2376 -0.0847 2.1118 42 1 3.1835 -2.2190 0.0172 43 1 3.7451 -2.0962 1.7697 44 1 1.3560 -2.4210 2.5577 45 1 0.7947 -2.5435 0.8052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698637868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:26 Heat of formation + Delta-G solvation = -6.744111 kcal Electronic energy + Delta-G solvation = -23724.610389 eV Core-core repulsion = 20549.795306 eV Total energy + Delta-G solvation = -3174.815083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.37504 -38.05731 -36.29351 -34.88564 -33.24752 -31.43325 -29.69520 -28.65478 -28.41084 -25.94046 -23.70735 -22.34578 -22.01143 -21.25614 -20.17895 -19.55024 -18.83598 -17.27336 -16.94832 -16.02077 -15.44590 -15.28208 -14.50127 -14.33231 -14.16114 -13.72860 -13.24954 -13.11007 -12.99928 -12.79829 -12.17261 -12.07021 -11.91417 -11.66870 -11.28320 -11.13146 -11.04432 -10.96659 -10.90184 -10.81907 -10.73121 -10.69761 -10.54199 -10.29061 -10.16103 -9.97471 -9.74794 -9.60281 -9.10190 -8.62876 -8.45371 -6.74964 -5.68297 -2.93167 3.19503 3.48021 3.54363 3.56412 3.60606 4.06262 4.65123 4.66197 4.74988 4.90621 4.91433 5.14429 5.19280 5.37795 5.42902 5.49824 5.58208 5.64700 5.68106 5.70019 5.71887 5.76687 5.78474 5.80594 6.00370 6.02632 6.04210 6.09909 6.19646 6.21211 6.31233 6.37228 6.37989 6.43934 6.51151 6.54323 6.69124 6.70969 7.04661 7.29896 7.80835 8.05890 8.51850 8.82429 9.63178 10.22653 10.58572 11.55106 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.007254 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.611862 B = 3859.235928 C = 5466.819386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.199 3.801 3 C 0.139 3.861 4 N -0.724 5.724 5 C -0.224 4.224 6 H 0.068 0.932 7 C -0.018 4.018 8 N -0.937 5.937 9 Si 0.903 3.097 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.293 1.293 13 N -0.716 5.716 14 C 0.530 3.470 15 O -0.524 6.524 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.103 4.103 21 C -0.142 4.142 22 C -0.163 4.163 23 C -0.184 4.184 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.017 0.983 28 H 0.057 0.943 29 H 0.381 0.619 30 H 0.251 0.749 31 H 0.394 0.606 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.292 -15.695 2.571 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.113 3.887 3 C 0.011 3.989 4 N -0.369 5.369 5 C -0.356 4.356 6 H 0.086 0.914 7 C -0.213 4.213 8 N -0.587 5.587 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.221 1.221 13 N -0.368 5.368 14 C 0.317 3.683 15 O -0.400 6.400 16 C -0.137 4.137 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.162 4.162 20 C -0.141 4.141 21 C -0.162 4.162 22 C -0.200 4.200 23 C -0.221 4.221 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.215 0.785 30 H 0.061 0.939 31 H 0.227 0.773 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.944 -15.091 3.134 15.909 hybrid contribution -0.353 0.691 -0.747 1.077 sum 3.590 -14.400 2.388 15.032 Atomic orbital electron populations 1.21981 0.93389 1.01177 1.03935 1.20030 0.93518 0.92677 0.82442 1.21174 0.99290 0.87735 0.90685 1.42232 1.61122 1.10367 1.23146 1.19279 1.24530 0.87627 1.04117 0.91429 1.24650 1.01011 0.98061 0.97581 1.69655 1.40065 1.35805 1.13157 0.86156 0.77420 0.85403 0.77539 1.20690 1.22080 1.22082 1.46003 1.07282 1.57195 1.26281 1.20121 0.82309 0.80695 0.85208 1.90644 1.55912 1.43622 1.49823 1.22338 0.97688 0.99492 0.94226 1.22345 0.98434 1.02163 0.92122 1.22110 0.95149 1.00760 0.97994 1.22145 0.97916 1.00802 0.95339 1.22192 0.93095 1.03232 0.95554 1.22565 1.03898 0.90144 0.99592 1.22906 0.92740 1.02348 1.02004 1.22955 0.97509 1.00222 1.01426 0.93016 0.91197 0.90800 0.96505 0.92509 0.78488 0.93885 0.77302 0.89091 0.89902 0.91271 0.91646 0.92072 0.92191 0.91823 0.91812 0.90005 0.87529 0.89007 0.89614 0.89437 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.18 37.16 0.30 -1.92 16 2 C 0.20 3.31 0.55 -131.82 -0.07 3.23 16 3 C 0.14 3.01 4.83 -4.04 -0.02 3.00 16 4 N -0.72 -18.47 5.18 -59.90 -0.31 -18.78 16 5 C -0.22 -6.45 9.99 -15.06 -0.15 -6.60 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 8 N -0.94 -28.21 13.06 55.49 0.72 -27.48 16 9 Si 0.90 23.08 29.55 -169.99 -5.02 18.06 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 13 N -0.72 -11.10 4.20 -47.61 -0.20 -11.30 16 14 C 0.53 8.85 4.16 -10.98 -0.05 8.81 16 15 O -0.52 -10.62 12.01 5.56 0.07 -10.55 16 16 C -0.12 -1.57 3.28 -89.74 -0.29 -1.86 16 17 C -0.11 -1.58 6.28 -25.03 -0.16 -1.74 16 18 C -0.12 -1.45 6.80 -25.61 -0.17 -1.63 16 19 C -0.12 -1.41 6.80 -25.61 -0.17 -1.59 16 20 C -0.10 -1.38 5.90 -25.07 -0.15 -1.53 16 21 C -0.14 -2.11 4.86 -90.62 -0.44 -2.55 16 22 C -0.16 -2.24 8.53 -26.73 -0.23 -2.47 16 23 C -0.18 -2.21 9.68 -26.73 -0.26 -2.47 16 24 H 0.05 0.64 6.89 -51.93 -0.36 0.28 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.28 6.86 -51.93 -0.36 0.93 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 1.38 5.72 -51.93 -0.30 1.09 16 29 H 0.38 9.92 6.35 -40.82 -0.26 9.66 16 30 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.39 5.29 8.48 -40.82 -0.35 4.94 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.49 8.05 -51.93 -0.42 1.08 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.32 7.45 -51.93 -0.39 0.93 16 41 H 0.11 1.61 8.06 -51.93 -0.42 1.19 16 42 H 0.09 1.31 5.17 -51.92 -0.27 1.04 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.02 7.17 -51.93 -0.37 0.64 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -31.94 346.56 -9.15 -41.09 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -7.68 Total: 13.68 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.96 Total: -9.94 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.21 Total: -57.56 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.94 -9.15 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698637868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.344 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds