Wall clock time and date at job start Fri Apr 10 2020 17:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 N 1.46504 * 109.46822 * 299.99893 * 3 2 1 5 5 C 1.36939 * 119.99634 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00204 * 0.02562 * 5 4 3 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 3 8 8 N 1.31622 * 119.99871 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00163 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47045 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47567 * 119.99573 * 9 7 5 12 12 H 1.48502 * 109.47233 * 239.99891 * 9 7 5 13 13 N 1.46496 * 109.47112 * 239.99924 * 2 1 3 14 14 C 1.34783 * 119.99720 * 175.38502 * 13 2 1 15 15 O 1.21279 * 120.00001 * 355.82996 * 14 13 2 16 16 C 1.50698 * 119.99751 * 175.83260 * 14 13 2 17 17 C 1.54967 * 110.92560 * 66.53761 * 16 14 13 18 18 C 1.54267 * 104.16113 * 156.29305 * 17 16 14 19 19 C 1.53880 * 106.63877 * 336.44686 * 18 17 16 20 20 C 1.54264 * 106.60032 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.47116 * 119.99742 * 2 1 3 22 22 C 1.52998 * 117.50032 * 121.76638 * 21 2 1 23 23 C 1.52999 * 60.00259 * 252.50958 * 22 21 2 24 24 H 1.09005 * 109.46461 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47421 * 299.99449 * 1 2 3 26 26 H 1.08994 * 109.47138 * 60.00621 * 1 2 3 27 27 H 1.09002 * 109.47271 * 59.99788 * 3 2 1 28 28 H 1.08999 * 109.46759 * 179.97438 * 3 2 1 29 29 H 0.96997 * 119.99835 * 0.02562 * 4 3 2 30 30 H 0.96994 * 119.99828 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00313 * 355.38600 * 13 2 1 32 32 H 1.09000 * 110.67516 * 303.23288 * 16 14 13 33 33 H 1.09000 * 110.47504 * 37.64634 * 17 16 14 34 34 H 1.08997 * 110.53033 * 274.97318 * 17 16 14 35 35 H 1.09001 * 110.03473 * 217.14131 * 18 17 16 36 36 H 1.09000 * 110.03246 * 95.75240 * 18 17 16 37 37 H 1.09000 * 110.03008 * 119.25904 * 19 18 17 38 38 H 1.08997 * 110.03185 * 240.63819 * 19 18 17 39 39 H 1.09001 * 110.48706 * 142.29049 * 20 19 18 40 40 H 1.09006 * 110.48391 * 264.79838 * 20 19 18 41 41 H 1.09002 * 115.55325 * 267.47024 * 21 2 1 42 42 H 1.09007 * 117.49828 * 359.97438 * 22 21 2 43 43 H 1.08997 * 117.50329 * 145.01637 * 22 21 2 44 44 H 1.09001 * 117.49912 * 252.51280 * 23 22 21 45 45 H 1.08992 * 117.50200 * 107.48480 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8819 3.4443 -1.4127 6 1 2.5027 3.9692 -0.7018 7 6 1.4187 4.0988 -2.5458 8 7 0.6625 3.4589 -3.4124 9 14 1.8699 5.8871 -2.8415 10 1 2.7236 6.3729 -1.7277 11 1 2.6119 6.0053 -4.1223 12 1 0.6324 6.7052 -2.9091 13 7 2.0183 -0.6906 -1.1961 14 6 3.3399 -0.7330 -1.4574 15 8 4.1184 -0.1360 -0.7445 16 6 3.8500 -1.5222 -2.6355 17 6 3.3796 -0.8908 -3.9702 18 6 4.4159 -1.3777 -5.0040 19 6 5.6952 -1.7173 -4.2192 20 6 5.3927 -1.4243 -2.7352 21 6 2.0400 -0.7212 1.2493 22 6 2.9491 -1.9344 1.0430 23 6 1.5080 -2.1303 1.5182 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4425 0.0005 29 1 0.9936 1.6617 -1.8345 30 1 0.3392 3.9161 -4.2044 31 1 1.3906 -1.1173 -1.8001 32 1 3.5325 -2.5628 -2.5682 33 1 3.3909 0.1971 -3.9022 34 1 2.3834 -1.2474 -4.2316 35 1 4.6203 -0.5888 -5.7279 36 1 4.0446 -2.2660 -5.5150 37 1 5.9442 -2.7705 -4.3487 38 1 6.5206 -1.0938 -4.5629 39 1 5.8644 -2.1700 -2.0953 40 1 5.7316 -0.4236 -2.4671 41 1 2.2376 -0.0847 2.1118 42 1 3.1835 -2.2190 0.0172 43 1 3.7451 -2.0962 1.7697 44 1 1.3560 -2.4210 2.5577 45 1 0.7947 -2.5435 0.8052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698637868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:25 Heat of formation + Delta-G solvation = -26.855697 kcal Electronic energy + Delta-G solvation = -23725.482493 eV Core-core repulsion = 20549.795306 eV Total energy + Delta-G solvation = -3175.687187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67893 -39.22076 -37.52176 -36.57585 -34.87041 -33.19432 -31.37969 -29.75005 -29.49829 -27.63608 -25.55481 -23.61232 -23.07236 -22.80482 -21.20859 -20.71094 -20.21461 -19.26125 -18.24313 -17.27389 -16.90648 -16.55098 -16.21926 -15.72481 -15.39158 -15.25673 -14.97735 -14.61015 -14.24269 -14.16156 -13.58983 -13.50534 -13.34767 -13.00869 -12.91072 -12.82726 -12.38983 -12.26485 -12.10256 -12.08894 -12.02574 -11.98803 -11.95073 -11.77632 -11.67656 -11.26041 -11.17976 -11.04400 -10.90967 -10.25662 -9.83805 -8.89519 -7.94948 -5.19763 1.42453 1.43159 1.53118 1.87832 2.35721 2.54232 2.97964 3.37929 3.58053 3.67683 3.68241 3.86609 4.01908 4.02654 4.19025 4.29682 4.38687 4.41852 4.48498 4.52849 4.59091 4.60925 4.63901 4.80474 4.81435 4.91172 4.93351 4.96857 4.98154 5.09688 5.10618 5.21831 5.23785 5.30253 5.31908 5.34405 5.36594 5.42603 5.47223 5.51143 5.82681 6.28340 6.79319 7.35362 7.53687 8.11254 8.40237 9.28063 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.007254 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.611862 B = 3859.235928 C = 5466.819386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.208 3.792 3 C 0.140 3.860 4 N -0.726 5.726 5 C -0.240 4.240 6 H 0.059 0.941 7 C -0.069 4.069 8 N -0.961 5.961 9 Si 0.965 3.035 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.288 1.288 13 N -0.709 5.709 14 C 0.523 3.477 15 O -0.567 6.567 16 C -0.108 4.108 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.104 4.104 21 C -0.166 4.166 22 C -0.169 4.169 23 C -0.148 4.148 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.010 0.990 28 H 0.028 0.972 29 H 0.377 0.623 30 H 0.250 0.750 31 H 0.406 0.594 32 H 0.130 0.870 33 H 0.029 0.971 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -18.117 2.368 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.121 3.879 3 C 0.012 3.988 4 N -0.369 5.369 5 C -0.372 4.372 6 H 0.077 0.923 7 C -0.261 4.261 8 N -0.612 5.612 9 Si 0.795 3.205 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.215 1.215 13 N -0.361 5.361 14 C 0.311 3.689 15 O -0.445 6.445 16 C -0.129 4.129 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.142 4.142 21 C -0.186 4.186 22 C -0.206 4.206 23 C -0.185 4.185 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.028 0.972 28 H 0.046 0.954 29 H 0.211 0.789 30 H 0.059 0.941 31 H 0.241 0.759 32 H 0.147 0.853 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.378 -17.533 2.940 18.096 hybrid contribution -0.147 1.476 -0.639 1.615 sum 3.231 -16.058 2.301 16.540 Atomic orbital electron populations 1.21911 0.91917 1.03155 1.02647 1.19821 0.94422 0.89687 0.83967 1.21201 0.97545 0.91195 0.88815 1.42270 1.60915 1.09608 1.24150 1.19533 1.24340 0.89173 1.04165 0.92326 1.25371 1.01361 1.01937 0.97466 1.69779 1.40858 1.37148 1.13389 0.85193 0.77211 0.80856 0.77256 1.20065 1.22032 1.21475 1.45959 1.07325 1.56585 1.26196 1.20752 0.82269 0.80302 0.85541 1.90631 1.56960 1.45434 1.51502 1.22395 0.97603 1.00751 0.92194 1.22283 1.00316 0.98892 0.93458 1.22122 0.94683 1.01593 0.97255 1.22136 0.97557 1.02549 0.93328 1.22173 0.93144 1.01403 0.97511 1.22423 1.06443 0.91342 0.98359 1.22916 0.94061 1.01639 1.01982 1.23051 0.96104 0.96387 1.02955 0.89308 0.91142 0.93392 0.97212 0.95414 0.78925 0.94066 0.75869 0.85266 0.95169 0.89702 0.92565 0.89153 0.89257 0.92057 0.90411 0.93981 0.88517 0.89413 0.89592 0.87412 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.18 71.98 0.59 -3.44 16 2 C 0.21 6.87 0.55 3.60 0.00 6.87 16 3 C 0.14 6.33 4.83 86.38 0.42 6.75 16 4 N -0.73 -38.46 5.18 -343.44 -1.78 -40.24 16 5 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 6 H 0.06 3.52 7.83 -2.91 -0.02 3.49 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 8 N -0.96 -58.86 13.06 21.65 0.28 -58.58 16 9 Si 0.97 48.26 29.55 68.60 2.03 50.29 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 12 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 13 N -0.71 -21.69 4.20 -422.92 -1.78 -23.47 16 14 C 0.52 17.65 4.16 87.66 0.36 18.01 16 15 O -0.57 -23.98 12.01 -3.03 -0.04 -24.01 16 16 C -0.11 -2.82 3.28 -10.22 -0.03 -2.85 16 17 C -0.11 -3.08 6.28 31.70 0.20 -2.88 16 18 C -0.12 -2.62 6.80 31.32 0.21 -2.40 16 19 C -0.12 -2.46 6.80 31.32 0.21 -2.25 16 20 C -0.10 -2.75 5.90 31.67 0.19 -2.56 16 21 C -0.17 -4.77 4.86 -10.79 -0.05 -4.82 16 22 C -0.17 -4.38 8.53 30.59 0.26 -4.12 16 23 C -0.15 -3.05 9.68 30.60 0.30 -2.76 16 24 H 0.09 1.91 6.89 -2.38 -0.02 1.89 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 1.65 6.86 -2.39 -0.02 1.63 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.03 1.44 5.72 -2.39 -0.01 1.43 16 29 H 0.38 20.32 6.35 -92.71 -0.59 19.73 16 30 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.41 10.33 8.48 -92.71 -0.79 9.54 16 32 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.03 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.43 7.45 -2.38 -0.02 1.41 16 41 H 0.10 2.94 8.06 -2.39 -0.02 2.92 16 42 H 0.09 2.35 5.17 -2.38 -0.01 2.34 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.11 1.89 7.17 -2.39 -0.02 1.87 16 Total: -1.00 -72.18 346.56 2.29 -69.89 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: -0.39 Total: 39.63 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 3.96 Total: -13.51 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -3.27 Total: -122.29 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.01 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -72.18 2.29 -69.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698637868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.037 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds