Wall clock time and date at job start Fri Apr 10 2020 17:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47486 * 2 1 4 4 N 1.46503 * 109.47364 * 300.00272 * 3 2 1 5 5 C 1.36935 * 120.00181 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00194 * 359.97438 * 5 4 3 7 7 C 1.38809 * 119.99819 * 180.02562 * 5 4 3 8 8 N 1.31614 * 120.00435 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00025 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47069 * 89.99338 * 9 7 5 11 11 H 1.48494 * 109.47180 * 209.99804 * 9 7 5 12 12 H 1.48506 * 109.46787 * 330.00024 * 9 7 5 13 13 N 1.46506 * 109.47222 * 240.00022 * 2 1 3 14 14 C 1.34777 * 119.99859 * 173.95979 * 13 2 1 15 15 O 1.21276 * 120.00362 * 5.27298 * 14 13 2 16 16 C 1.50708 * 119.99643 * 185.26997 * 14 13 2 17 17 C 1.52999 * 109.46994 * 180.02562 * 16 14 13 18 18 C 1.53782 * 113.61444 * 274.13823 * 17 16 14 19 19 C 1.53951 * 87.01996 * 220.04738 * 18 17 16 20 20 C 1.53774 * 113.61608 * 176.52825 * 17 16 14 21 21 C 1.52999 * 109.47147 * 120.00480 * 2 1 3 22 22 C 1.53001 * 117.50288 * 123.08058 * 21 2 1 23 23 C 1.53001 * 59.99986 * 252.50869 * 22 21 2 24 24 H 1.09001 * 109.46832 * 59.99882 * 1 2 3 25 25 H 1.08997 * 109.46873 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46811 * 299.99785 * 1 2 3 27 27 H 1.09001 * 109.48011 * 179.97438 * 3 2 1 28 28 H 1.09009 * 109.46720 * 60.00066 * 3 2 1 29 29 H 0.97003 * 119.99665 * 359.97438 * 4 3 2 30 30 H 0.97000 * 120.00752 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99921 * 353.96536 * 13 2 1 32 32 H 1.08998 * 109.46881 * 300.00044 * 16 14 13 33 33 H 1.09001 * 109.46902 * 60.00365 * 16 14 13 34 34 H 1.09003 * 112.84769 * 45.33488 * 17 16 14 35 35 H 1.08998 * 113.61816 * 334.57002 * 18 17 16 36 36 H 1.09001 * 113.61196 * 105.47066 * 18 17 16 37 37 H 1.09009 * 113.53910 * 270.81502 * 19 18 17 38 38 H 1.08997 * 113.66926 * 139.93041 * 19 18 17 39 39 H 1.09001 * 113.61881 * 254.53587 * 20 17 16 40 40 H 1.09003 * 113.61324 * 25.35148 * 20 17 16 41 41 H 1.09002 * 115.55012 * 268.78571 * 21 2 1 42 42 H 1.09006 * 117.49342 * 0.02562 * 22 21 2 43 43 H 1.09000 * 117.50377 * 145.01451 * 22 21 2 44 44 H 1.08996 * 117.49868 * 252.50891 * 23 22 21 45 45 H 1.08997 * 117.49698 * 107.48803 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5518 2.1331 -1.1961 5 6 1.8822 3.4443 -1.4126 6 1 2.5025 3.9694 -0.7013 7 6 1.4191 4.0988 -2.5456 8 7 0.6627 3.4592 -3.4123 9 14 1.8704 5.8872 -2.8413 10 1 3.1329 5.9569 -3.6201 11 1 0.7824 6.5532 -3.6014 12 1 2.0549 6.5732 -1.5371 13 7 2.0184 -0.6906 -1.1962 14 6 3.3374 -0.7085 -1.4727 15 8 4.1288 -0.2366 -0.6841 16 6 3.8288 -1.3148 -2.7620 17 6 5.3536 -1.2075 -2.8273 18 6 5.8532 0.1316 -3.3947 19 6 6.9280 -0.6781 -4.1426 20 6 5.9654 -1.8753 -4.0701 21 6 2.0400 -0.7213 1.2492 22 6 2.9739 -1.9157 1.0436 23 6 1.5317 -2.1422 1.5015 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9562 0.8901 29 1 0.9943 1.6616 -1.8348 30 1 0.3393 3.9164 -4.2043 31 1 1.3924 -1.1350 -1.7892 32 1 3.5365 -2.3640 -2.8046 33 1 3.3902 -0.7808 -3.6050 34 1 5.8385 -1.4945 -1.8942 35 1 5.1369 0.6207 -4.0547 36 1 6.2589 0.8025 -2.6374 37 1 7.8442 -0.8193 -3.5691 38 1 7.1126 -0.3272 -5.1578 39 1 6.4615 -2.8223 -3.8574 40 1 5.2793 -1.9373 -4.9148 41 1 2.2164 -0.0881 2.1187 42 1 3.2253 -2.1873 0.0182 43 1 3.7650 -2.0683 1.7777 44 1 1.3740 -2.4438 2.5370 45 1 0.8340 -2.5631 0.7776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698643425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:30 Heat of formation + Delta-G solvation = 1.866410 kcal Electronic energy + Delta-G solvation = -23470.724160 eV Core-core repulsion = 20296.282457 eV Total energy + Delta-G solvation = -3174.441703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60578 -39.71655 -38.03287 -36.57962 -34.86248 -33.25910 -31.66398 -30.47495 -27.64374 -26.44542 -25.58913 -24.64955 -23.07947 -22.89319 -21.56228 -20.31175 -20.13327 -19.24987 -17.90994 -17.29657 -16.92642 -16.42279 -16.26557 -15.84127 -15.38064 -15.25986 -14.90955 -14.67444 -14.57421 -13.94114 -13.53041 -13.37500 -13.31390 -13.21694 -12.99315 -12.81804 -12.73539 -12.38752 -12.27225 -12.24099 -12.09934 -11.96828 -11.75810 -11.48219 -11.25401 -11.14706 -11.04511 -10.98252 -10.91578 -10.25607 -9.79943 -8.91760 -7.95211 -5.20431 1.43012 1.44437 1.52664 1.91936 2.40990 2.54418 3.00461 3.37911 3.68626 3.70620 3.77692 3.84443 3.99859 4.02691 4.04097 4.17447 4.19758 4.38280 4.42289 4.52791 4.59011 4.65819 4.74295 4.83857 4.89149 4.89420 4.91478 4.95726 4.98431 5.05484 5.11042 5.12194 5.18233 5.23328 5.32927 5.34184 5.38191 5.42509 5.47041 5.65907 5.83274 6.27837 6.82161 7.35203 7.56751 8.10379 8.39615 9.27631 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.007302 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.246873 B = 3833.610219 C = 5801.675192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.209 3.791 3 C 0.143 3.857 4 N -0.726 5.726 5 C -0.242 4.242 6 H 0.059 0.941 7 C -0.067 4.067 8 N -0.961 5.961 9 Si 0.964 3.036 10 H -0.291 1.291 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.713 5.713 14 C 0.515 3.485 15 O -0.562 6.562 16 C -0.129 4.129 17 C -0.090 4.090 18 C -0.148 4.148 19 C -0.136 4.136 20 C -0.120 4.120 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.152 4.152 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.023 0.977 28 H 0.012 0.988 29 H 0.378 0.622 30 H 0.251 0.749 31 H 0.407 0.593 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -17.041 2.404 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.122 3.878 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.374 4.374 6 H 0.077 0.923 7 C -0.259 4.259 8 N -0.612 5.612 9 Si 0.794 3.206 10 H -0.218 1.218 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.365 5.365 14 C 0.303 3.697 15 O -0.440 6.440 16 C -0.168 4.168 17 C -0.109 4.109 18 C -0.186 4.186 19 C -0.173 4.173 20 C -0.157 4.157 21 C -0.184 4.184 22 C -0.199 4.199 23 C -0.189 4.189 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.029 0.971 29 H 0.211 0.789 30 H 0.060 0.940 31 H 0.242 0.758 32 H 0.140 0.860 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.684 -16.519 3.012 17.433 hybrid contribution -0.208 1.445 -0.587 1.574 sum 4.476 -15.074 2.425 15.910 Atomic orbital electron populations 1.21902 0.91961 1.03106 1.02633 1.19788 0.94346 0.89585 0.84034 1.21112 0.97179 0.91247 0.88934 1.42277 1.60982 1.09618 1.24095 1.19497 1.24488 0.89197 1.04199 0.92287 1.25358 1.01234 1.01901 0.97456 1.69764 1.40760 1.37304 1.13400 0.85274 0.76885 0.80830 0.77603 1.21849 1.21527 1.20083 1.45987 1.07762 1.56078 1.26704 1.20905 0.82188 0.78394 0.88175 1.90640 1.55708 1.47112 1.50577 1.21747 0.97011 1.03398 0.94672 1.22247 0.93207 0.96651 0.98814 1.22972 0.99383 0.96883 0.99321 1.22828 0.97068 0.96819 1.00589 1.22901 0.98151 0.97723 0.96960 1.22394 1.06341 0.91352 0.98285 1.22873 0.93423 1.01679 1.01963 1.23053 0.96549 0.96408 1.02913 0.93313 0.89409 0.91223 0.95872 0.97057 0.78868 0.94013 0.75790 0.86049 0.89306 0.89694 0.91894 0.94295 0.89737 0.90859 0.89682 0.89123 0.88685 0.89395 0.89946 0.87603 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.20 71.98 0.59 -3.42 16 2 C 0.21 6.86 0.55 3.60 0.00 6.86 16 3 C 0.14 6.38 4.83 86.38 0.42 6.80 16 4 N -0.73 -37.96 5.17 -343.44 -1.78 -39.73 16 5 C -0.24 -14.22 9.99 84.03 0.84 -13.38 16 6 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 7 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 8 N -0.96 -58.44 13.06 21.65 0.28 -58.16 16 9 Si 0.96 47.80 29.55 68.60 2.03 49.83 16 10 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 N -0.71 -21.42 4.19 -422.91 -1.77 -23.20 16 14 C 0.51 16.99 5.09 87.66 0.45 17.44 16 15 O -0.56 -22.75 11.71 -3.02 -0.04 -22.79 16 16 C -0.13 -3.30 5.53 29.85 0.16 -3.14 16 17 C -0.09 -2.37 3.11 -10.27 -0.03 -2.40 16 18 C -0.15 -4.55 7.65 31.18 0.24 -4.31 16 19 C -0.14 -3.06 8.09 31.18 0.25 -2.80 16 20 C -0.12 -2.34 7.65 31.12 0.24 -2.10 16 21 C -0.16 -4.74 4.83 -10.79 -0.05 -4.80 16 22 C -0.16 -4.32 8.30 30.59 0.25 -4.07 16 23 C -0.15 -3.23 9.68 30.59 0.30 -2.94 16 24 H 0.05 1.66 6.86 -2.39 -0.02 1.65 16 25 H 0.09 1.89 6.96 -2.39 -0.02 1.88 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.02 1.19 5.93 -2.39 -0.01 1.17 16 28 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.38 20.08 6.35 -92.71 -0.59 19.49 16 30 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.41 9.97 8.49 -92.71 -0.79 9.18 16 32 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 2.42 7.88 -2.39 -0.02 2.40 16 34 H 0.08 2.42 7.73 -2.39 -0.02 2.41 16 35 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 41 H 0.09 2.91 8.07 -2.39 -0.02 2.89 16 42 H 0.09 2.44 5.09 -2.38 -0.01 2.42 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.10 1.93 7.26 -2.39 -0.02 1.91 16 Total: -1.00 -70.52 350.02 2.45 -68.06 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.39 Total: 41.70 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.12 Total: -15.72 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -3.27 Total: -121.09 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.04 Total: -22.79 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -70.52 2.45 -68.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698643425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.930 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds