Wall clock time and date at job start Fri Apr 10 2020 17:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.51852 * 108.65231 * 304.09207 * 9 7 6 11 11 C 1.53068 * 110.74507 * 172.39482 * 10 9 7 12 12 C 1.51370 * 108.59971 * 85.74542 * 11 10 9 13 13 C 1.29521 * 120.36085 * 288.08075 * 12 11 10 14 14 C 1.51376 * 120.35958 * 0.02562 * 13 12 11 15 15 C 1.51850 * 108.64784 * 180.02562 * 9 7 6 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08998 * 108.60296 * 61.98631 * 9 7 6 34 34 H 1.09001 * 109.22131 * 292.73054 * 10 9 7 35 35 H 1.08997 * 109.21687 * 52.07060 * 10 9 7 36 36 H 1.08998 * 109.62247 * 326.01029 * 11 10 9 37 37 H 1.09003 * 109.77280 * 205.56531 * 11 10 9 38 38 H 1.08002 * 119.81963 * 108.09784 * 12 11 10 39 39 H 1.07997 * 119.82538 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.60987 * 312.15624 * 14 13 12 41 41 H 1.08998 * 109.61214 * 191.63886 * 14 13 12 42 42 H 1.09001 * 109.22222 * 307.92659 * 15 9 7 43 43 H 1.08997 * 109.22617 * 67.27706 * 15 9 7 44 44 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 45 45 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 5.2098 5.3347 -1.0085 11 6 5.5522 6.8127 -0.8057 12 6 6.8526 7.1097 -1.5214 13 6 7.9743 6.6615 -1.0540 14 6 7.9991 5.8345 0.2136 15 6 7.4110 4.4551 -0.0918 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.7858 4.6654 4.0714 23 1 -1.7857 5.1494 1.6951 24 1 -2.6865 3.0484 2.5046 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 5.6369 4.8542 1.0246 34 1 5.5363 5.0234 -2.0008 35 1 4.1309 5.2020 -0.9284 36 1 5.6648 7.0197 0.2585 37 1 4.7577 7.4352 -1.2173 38 1 6.8450 7.6988 -2.4266 39 1 8.8969 6.8789 -1.5715 40 1 7.4017 6.3251 0.9822 41 1 9.0270 5.7259 0.5595 42 1 7.8213 3.7274 0.6084 43 1 7.6811 4.1665 -1.1076 44 1 2.2720 2.1231 1.9978 45 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714122832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:52 Heat of formation + Delta-G solvation = -53.835596 kcal Electronic energy + Delta-G solvation = -22643.423996 eV Core-core repulsion = 19466.566873 eV Total energy + Delta-G solvation = -3176.857123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32643 -39.09033 -38.26257 -35.46804 -34.42259 -33.58251 -32.72097 -31.33128 -29.43429 -26.88576 -25.42123 -24.88129 -24.08133 -22.30885 -21.73292 -20.74647 -19.43152 -18.87969 -18.36600 -17.34524 -16.99537 -16.61514 -16.38038 -15.82262 -15.48377 -15.42003 -14.79359 -14.77058 -14.48037 -14.30667 -13.96392 -13.88156 -13.47672 -13.22047 -13.14397 -12.74635 -12.65077 -12.56294 -12.16674 -12.10222 -12.00070 -11.83674 -11.78141 -11.56569 -11.54170 -11.23893 -11.17764 -10.93371 -10.75790 -10.09369 -9.88821 -9.06874 -8.25987 -5.21552 1.44033 1.60536 1.62986 1.70852 1.86483 2.22960 2.75990 3.49328 3.59739 3.65975 3.72621 3.81216 3.86743 4.10351 4.20729 4.24164 4.27305 4.39121 4.43661 4.47091 4.49905 4.58787 4.63089 4.71372 4.76662 4.86516 4.90467 5.00340 5.03177 5.06638 5.13236 5.16321 5.19877 5.27352 5.37291 5.42052 5.50073 5.64039 5.73435 5.81713 6.07093 6.53740 6.58882 7.15072 7.20028 8.05588 8.18569 9.24327 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.004556 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.663712 B = 6144.710601 C = 7212.072558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.171 3.829 4 H 0.057 0.943 5 C 0.121 3.879 6 N -0.712 5.712 7 C 0.508 3.492 8 O -0.587 6.587 9 C -0.097 4.097 10 C -0.099 4.099 11 C -0.090 4.090 12 C -0.162 4.162 13 C -0.162 4.162 14 C -0.090 4.090 15 C -0.087 4.087 16 N -0.738 5.738 17 C -0.306 4.306 18 H 0.071 0.929 19 C -0.102 4.102 20 N -0.979 5.979 21 Si 1.118 2.882 22 H -0.301 1.301 23 H -0.277 1.277 24 H -0.283 1.283 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.409 0.591 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.358 0.642 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.734 5.321 -11.211 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.063 3.937 4 H 0.075 0.925 5 C -0.004 4.004 6 N -0.363 5.363 7 C 0.295 3.705 8 O -0.468 6.468 9 C -0.118 4.118 10 C -0.137 4.137 11 C -0.127 4.127 12 C -0.180 4.180 13 C -0.180 4.180 14 C -0.127 4.127 15 C -0.125 4.125 16 N -0.381 5.381 17 C -0.437 4.437 18 H 0.089 0.911 19 C -0.293 4.293 20 N -0.628 5.628 21 Si 0.945 3.055 22 H -0.228 1.228 23 H -0.203 1.203 24 H -0.210 1.210 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.246 0.754 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.190 0.810 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.073 5.484 -10.525 14.939 hybrid contribution 0.881 -0.908 -0.404 1.328 sum 9.954 4.576 -10.929 15.475 Atomic orbital electron populations 1.21679 0.95799 1.00581 1.01799 1.21989 0.96800 0.97315 1.00939 1.20623 0.90811 0.93151 0.89162 0.92547 1.21554 0.94322 0.83277 1.01258 1.46058 1.07549 1.10299 1.72419 1.21317 0.81887 0.92230 0.75020 1.90630 1.56727 1.48001 1.51437 1.21053 0.97591 0.90715 1.02453 1.21237 0.99747 0.94822 0.97925 1.20812 0.96384 0.94572 1.00944 1.22689 0.94317 1.00578 1.00412 1.22692 0.98630 0.98787 0.97891 1.20830 1.01890 0.93557 0.96400 1.21010 0.91891 0.97346 1.02253 1.42573 1.15854 1.67320 1.12336 1.20229 0.93180 1.29931 1.00377 0.91075 1.26826 1.08029 1.01950 0.92533 1.70996 1.08620 1.49910 1.33283 0.82726 0.71621 0.75880 0.75312 1.22764 1.20329 1.21005 0.92792 0.93354 0.93211 0.90668 0.93799 0.93384 0.90460 0.75421 0.88412 0.91598 0.91314 0.90753 0.90000 0.86267 0.86293 0.90694 0.90084 0.92297 0.92245 0.81003 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.18 71.98 0.66 -4.18 16 2 C -0.13 -4.31 5.61 30.59 0.17 -4.14 16 3 C 0.17 6.17 2.59 44.99 0.12 6.28 16 4 H 0.06 2.04 8.08 -2.38 -0.02 2.02 16 5 C 0.12 4.04 5.23 86.38 0.45 4.49 16 6 N -0.71 -23.29 5.19 -463.06 -2.40 -25.69 16 7 C 0.51 16.60 7.14 87.66 0.63 17.22 16 8 O -0.59 -22.88 15.76 -3.05 -0.05 -22.93 16 9 C -0.10 -2.48 2.06 -12.30 -0.03 -2.50 16 10 C -0.10 -2.19 4.87 30.24 0.15 -2.04 16 11 C -0.09 -1.67 5.62 30.08 0.17 -1.50 16 12 C -0.16 -2.79 9.34 27.37 0.26 -2.53 16 13 C -0.16 -2.80 9.34 27.37 0.26 -2.55 16 14 C -0.09 -1.67 5.62 30.07 0.17 -1.50 16 15 C -0.09 -2.09 4.30 30.23 0.13 -1.96 16 16 N -0.74 -33.23 4.50 -322.94 -1.45 -34.68 16 17 C -0.31 -15.38 7.75 84.03 0.65 -14.73 16 18 H 0.07 3.49 7.32 -2.91 -0.02 3.47 16 19 C -0.10 -5.52 5.50 84.86 0.47 -5.06 16 20 N -0.98 -58.41 13.70 21.65 0.30 -58.12 16 21 Si 1.12 49.59 29.92 68.60 2.05 51.64 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 2.02 5.99 -2.38 -0.01 2.01 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.41 13.52 7.14 -92.71 -0.66 12.86 16 33 H 0.10 2.46 7.89 -2.39 -0.02 2.44 16 34 H 0.07 1.48 7.86 -2.39 -0.02 1.46 16 35 H 0.07 1.57 6.99 -2.39 -0.02 1.55 16 36 H 0.07 1.40 6.68 -2.39 -0.02 1.38 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.12 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.12 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.07 1.38 6.68 -2.38 -0.02 1.37 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.57 7.77 -2.39 -0.02 1.56 16 43 H 0.06 1.52 7.86 -2.39 -0.02 1.50 16 44 H 0.36 17.56 6.63 -92.71 -0.61 16.95 16 45 H 0.24 14.51 6.77 -92.71 -0.63 13.88 16 Total: -1.00 -62.82 349.45 2.52 -60.29 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -0.17 Total: 44.19 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.25 Total: -14.70 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -3.56 Total: -118.49 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -62.82 2.52 -60.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714122832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.456 kcal (2) G-P(sol) polarization free energy of solvation -62.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds