Wall clock time and date at job start Fri Apr 10 2020 17:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47539 * 2 1 4 4 N 1.46494 * 109.47493 * 184.09251 * 3 2 1 5 5 C 1.36933 * 120.00481 * 84.57554 * 4 3 2 6 6 H 1.08000 * 119.99737 * 320.20043 * 5 4 3 7 7 C 1.38814 * 120.00304 * 140.19525 * 5 4 3 8 8 N 1.31623 * 120.00022 * 156.68236 * 7 5 4 9 9 Si 1.86798 * 119.99925 * 336.68991 * 7 5 4 10 10 H 1.48493 * 109.47263 * 95.19544 * 9 7 5 11 11 H 1.48503 * 109.46724 * 215.19548 * 9 7 5 12 12 H 1.48502 * 109.47075 * 335.18989 * 9 7 5 13 13 C 1.46503 * 119.99901 * 264.57964 * 4 3 2 14 14 C 1.52999 * 109.47263 * 89.99455 * 13 4 3 15 15 N 1.46503 * 109.47263 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99957 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99905 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47211 * 179.97438 * 18 16 15 20 20 H 1.08999 * 110.34583 * 307.29001 * 19 18 16 21 21 C 1.51104 * 110.38579 * 69.69834 * 19 18 16 22 22 C 1.30526 * 111.10461 * 135.24436 * 21 19 18 23 23 C 1.51105 * 111.10314 * 0.02562 * 22 21 19 24 24 C 1.54629 * 104.72529 * 343.55855 * 23 22 21 25 25 H 1.08994 * 109.47034 * 175.52147 * 1 2 3 26 26 H 1.09001 * 109.46788 * 295.52243 * 1 2 3 27 27 H 1.09003 * 109.46768 * 55.51707 * 1 2 3 28 28 H 1.09002 * 109.46616 * 120.00430 * 2 1 3 29 29 H 1.09003 * 109.46730 * 240.00123 * 2 1 3 30 30 H 1.09003 * 109.47186 * 304.09228 * 3 2 1 31 31 H 1.09007 * 109.47012 * 64.09030 * 3 2 1 32 32 H 0.96990 * 119.99648 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47324 * 209.99921 * 13 4 3 34 34 H 1.09000 * 109.47042 * 329.99716 * 13 4 3 35 35 H 1.08995 * 109.47331 * 300.00461 * 14 13 4 36 36 H 1.09000 * 109.46878 * 60.00161 * 14 13 4 37 37 H 0.97004 * 119.99443 * 0.02562 * 15 14 13 38 38 H 1.08995 * 109.47327 * 300.00050 * 18 16 15 39 39 H 1.09000 * 109.47091 * 59.99877 * 18 16 15 40 40 H 1.08005 * 124.44608 * 315.22914 * 21 19 18 41 41 H 1.08001 * 124.44694 * 180.02562 * 22 21 19 42 42 H 1.08995 * 110.38128 * 224.74695 * 23 22 21 43 43 H 1.09001 * 110.47942 * 102.42295 * 23 22 21 44 44 H 1.09002 * 111.03815 * 266.60357 * 24 23 22 45 45 H 1.09003 * 111.06939 * 142.67707 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5018 1.4435 -0.0986 5 6 4.1055 1.3601 -1.3248 6 1 3.7018 0.7041 -2.0818 7 6 5.2361 2.1188 -1.5949 8 7 6.0739 1.7392 -2.5364 9 14 5.5687 3.6784 -0.6221 10 1 6.4828 3.3719 0.5072 11 1 6.1987 4.6897 -1.5085 12 1 4.2889 4.2135 -0.0920 13 6 4.3177 1.5339 1.1149 14 6 4.6096 0.1265 1.6391 15 7 5.4250 0.2169 2.8529 16 6 5.8070 -0.9058 3.4932 17 8 5.4754 -1.9909 3.0649 18 6 6.6453 -0.8129 4.7421 19 6 6.9374 -2.2203 5.2663 20 1 6.0105 -2.7828 5.3783 21 6 7.8850 -2.9421 4.3366 22 6 8.8216 -3.5578 5.0055 23 6 8.6545 -3.3497 6.4928 24 6 7.6892 -2.1480 6.6155 25 1 -0.3633 -1.0245 -0.0802 26 1 -0.3633 0.4428 0.9274 27 1 -0.3633 0.5818 -0.8471 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6182 1.9770 -0.8511 31 1 1.7379 1.9347 0.9244 32 1 6.8641 2.2691 -2.7249 33 1 5.2563 2.0379 0.8849 34 1 3.7780 2.0998 1.8743 35 1 3.6710 -0.3776 1.8691 36 1 5.1493 -0.4394 0.8798 37 1 5.6899 1.0848 3.1957 38 1 7.5838 -0.3081 4.5130 39 1 6.1047 -0.2477 5.5013 40 1 7.7984 -2.9480 3.2601 41 1 9.6122 -4.1395 4.5550 42 1 9.6140 -3.1146 6.9533 43 1 8.2190 -4.2355 6.9552 44 1 8.2397 -1.2116 6.7066 45 1 7.0040 -2.2797 7.4529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714648280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:11 Heat of formation + Delta-G solvation = -15.436467 kcal Electronic energy + Delta-G solvation = -22100.318459 eV Core-core repulsion = 18925.126447 eV Total energy + Delta-G solvation = -3175.192012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.82055 -38.23712 -36.72356 -34.30529 -32.86868 -31.76258 -31.17439 -29.02995 -28.37058 -25.88083 -25.38229 -23.10483 -21.36083 -20.70664 -20.39031 -19.97560 -18.70557 -17.10893 -16.48902 -15.98239 -15.78451 -15.44196 -15.17676 -14.65574 -14.38426 -14.02199 -13.47494 -13.40041 -13.00112 -12.67864 -12.48798 -12.11038 -11.95527 -11.92178 -11.91622 -11.78768 -11.61799 -11.36990 -11.20743 -11.09693 -10.82014 -10.72568 -10.59151 -10.52011 -10.00140 -9.91553 -9.68217 -9.44745 -8.92947 -8.62277 -8.50527 -6.85504 -6.05634 -3.49770 2.28848 2.95219 3.22520 3.40946 3.46289 3.51487 4.46418 4.50661 4.52569 4.76583 4.93853 5.06849 5.15477 5.28395 5.31876 5.43551 5.44934 5.54886 5.59009 5.65637 5.66744 5.76188 5.78226 5.83373 5.88746 5.97058 6.09616 6.12300 6.15615 6.18709 6.39501 6.46914 6.52252 6.56750 6.65752 6.75537 6.84776 6.88957 6.94028 7.07109 7.84468 8.01172 8.37141 8.55850 8.94094 9.65275 10.06327 11.09585 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.004088 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.647267 B = 6847.634217 C = 7795.190261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.149 3.851 4 N -0.599 5.599 5 C -0.273 4.273 6 H 0.079 0.921 7 C 0.041 3.959 8 N -0.893 5.893 9 Si 0.876 3.124 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.269 1.269 13 C 0.128 3.872 14 C 0.099 3.901 15 N -0.729 5.729 16 C 0.506 3.494 17 O -0.542 6.542 18 C -0.134 4.134 19 C -0.054 4.054 20 H 0.090 0.910 21 C -0.136 4.136 22 C -0.188 4.188 23 C -0.097 4.097 24 C -0.123 4.123 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.395 0.605 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 -3.681 17.765 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.023 3.977 4 N -0.321 5.321 5 C -0.402 4.402 6 H 0.096 0.904 7 C -0.161 4.161 8 N -0.533 5.533 9 Si 0.705 3.295 10 H -0.215 1.215 11 H -0.228 1.228 12 H -0.193 1.193 13 C 0.002 3.998 14 C -0.026 4.026 15 N -0.380 5.380 16 C 0.292 3.708 17 O -0.419 6.419 18 C -0.174 4.174 19 C -0.072 4.072 20 H 0.108 0.892 21 C -0.154 4.154 22 C -0.206 4.206 23 C -0.134 4.134 24 C -0.160 4.160 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.228 0.772 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.587 -4.396 17.296 17.856 hybrid contribution 0.512 1.230 0.463 1.411 sum 1.099 -3.166 17.760 18.073 Atomic orbital electron populations 1.21723 0.97155 1.00662 1.00946 1.22142 0.93966 1.00398 1.01943 1.20978 0.83973 0.93742 0.99017 1.43986 1.00211 1.86019 1.01886 1.18724 1.10163 1.20753 0.90556 0.90394 1.25532 0.96869 0.97601 0.96078 1.69901 1.11489 1.38027 1.33911 0.86938 0.77972 0.85543 0.79023 1.21452 1.22756 1.19331 1.21364 0.96163 0.93169 0.89138 1.22321 0.94214 1.01227 0.84851 1.46188 1.54478 1.08502 1.28802 1.20627 0.80395 0.84376 0.85375 1.90691 1.56173 1.27525 1.67517 1.21732 1.00671 0.99014 0.95991 1.20817 0.99033 0.94246 0.93134 0.89186 1.23355 0.94817 0.97476 0.99756 1.23221 0.99866 1.02030 0.95467 1.21312 0.99352 0.98117 0.94666 1.22564 0.98012 0.98666 0.96774 0.93631 0.93569 0.93031 0.92976 0.91787 0.92847 0.94556 0.92638 0.92429 0.93954 0.92223 0.90845 0.77239 0.88936 0.89014 0.85604 0.86127 0.91523 0.91035 0.90952 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.14 -2.56 6.23 -26.73 -0.17 -2.73 16 3 C 0.15 2.89 5.72 -4.05 -0.02 2.86 16 4 N -0.60 -13.73 2.04 -173.24 -0.35 -14.09 16 5 C -0.27 -7.46 9.87 -15.06 -0.15 -7.61 16 6 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.04 1.14 5.27 -17.43 -0.09 1.05 16 8 N -0.89 -26.81 13.97 55.49 0.78 -26.03 16 9 Si 0.88 21.34 25.24 -169.99 -4.29 17.05 16 10 H -0.29 -6.67 6.67 56.52 0.38 -6.29 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.13 2.62 4.68 -4.04 -0.02 2.60 16 14 C 0.10 1.93 6.00 -4.04 -0.02 1.90 16 15 N -0.73 -11.47 5.56 -60.29 -0.33 -11.81 16 16 C 0.51 7.95 7.63 -10.99 -0.08 7.87 16 17 O -0.54 -10.64 14.92 5.56 0.08 -10.56 16 18 C -0.13 -1.49 5.09 -27.88 -0.14 -1.63 16 19 C -0.05 -0.62 2.52 -90.72 -0.23 -0.85 16 20 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 21 C -0.14 -1.75 9.26 -35.70 -0.33 -2.08 16 22 C -0.19 -2.06 10.78 -35.70 -0.38 -2.44 16 23 C -0.10 -0.87 6.81 -26.83 -0.18 -1.06 16 24 C -0.12 -1.07 6.71 -25.02 -0.17 -1.24 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.93 6.76 -51.93 -0.35 0.58 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.04 0.63 7.83 -51.92 -0.41 0.23 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.06 1.28 3.64 -51.93 -0.19 1.09 16 34 H 0.04 0.76 7.86 -51.93 -0.41 0.35 16 35 H 0.06 1.17 6.76 -51.93 -0.35 0.82 16 36 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 37 H 0.39 5.06 8.47 -40.82 -0.35 4.72 16 38 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.13 1.88 7.58 -52.48 -0.40 1.48 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.57 7.91 -51.93 -0.41 0.16 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -31.56 357.72 -8.28 -39.84 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.92 Total: 5.28 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.62 Total: -5.08 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.09 Total: -51.93 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.29 Total: 17.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.56 -8.28 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714648280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.402 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds