Wall clock time and date at job start Fri Apr 10 2020 17:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47539 * 2 1 4 4 N 1.46494 * 109.47493 * 184.09251 * 3 2 1 5 5 C 1.36933 * 120.00481 * 84.57554 * 4 3 2 6 6 H 1.08000 * 119.99737 * 320.20043 * 5 4 3 7 7 C 1.38814 * 120.00304 * 140.19525 * 5 4 3 8 8 N 1.31623 * 120.00022 * 156.68236 * 7 5 4 9 9 Si 1.86798 * 119.99925 * 336.68991 * 7 5 4 10 10 H 1.48493 * 109.47263 * 95.19544 * 9 7 5 11 11 H 1.48503 * 109.46724 * 215.19548 * 9 7 5 12 12 H 1.48502 * 109.47075 * 335.18989 * 9 7 5 13 13 C 1.46503 * 119.99901 * 264.57964 * 4 3 2 14 14 C 1.52999 * 109.47263 * 89.99455 * 13 4 3 15 15 N 1.46503 * 109.47263 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99957 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99905 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47211 * 179.97438 * 18 16 15 20 20 H 1.08999 * 110.34583 * 307.29001 * 19 18 16 21 21 C 1.51104 * 110.38579 * 69.69834 * 19 18 16 22 22 C 1.30526 * 111.10461 * 135.24436 * 21 19 18 23 23 C 1.51105 * 111.10314 * 0.02562 * 22 21 19 24 24 C 1.54629 * 104.72529 * 343.55855 * 23 22 21 25 25 H 1.08994 * 109.47034 * 175.52147 * 1 2 3 26 26 H 1.09001 * 109.46788 * 295.52243 * 1 2 3 27 27 H 1.09003 * 109.46768 * 55.51707 * 1 2 3 28 28 H 1.09002 * 109.46616 * 120.00430 * 2 1 3 29 29 H 1.09003 * 109.46730 * 240.00123 * 2 1 3 30 30 H 1.09003 * 109.47186 * 304.09228 * 3 2 1 31 31 H 1.09007 * 109.47012 * 64.09030 * 3 2 1 32 32 H 0.96990 * 119.99648 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47324 * 209.99921 * 13 4 3 34 34 H 1.09000 * 109.47042 * 329.99716 * 13 4 3 35 35 H 1.08995 * 109.47331 * 300.00461 * 14 13 4 36 36 H 1.09000 * 109.46878 * 60.00161 * 14 13 4 37 37 H 0.97004 * 119.99443 * 0.02562 * 15 14 13 38 38 H 1.08995 * 109.47327 * 300.00050 * 18 16 15 39 39 H 1.09000 * 109.47091 * 59.99877 * 18 16 15 40 40 H 1.08005 * 124.44608 * 315.22914 * 21 19 18 41 41 H 1.08001 * 124.44694 * 180.02562 * 22 21 19 42 42 H 1.08995 * 110.38128 * 224.74695 * 23 22 21 43 43 H 1.09001 * 110.47942 * 102.42295 * 23 22 21 44 44 H 1.09002 * 111.03815 * 266.60357 * 24 23 22 45 45 H 1.09003 * 111.06939 * 142.67707 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5018 1.4435 -0.0986 5 6 4.1055 1.3601 -1.3248 6 1 3.7018 0.7041 -2.0818 7 6 5.2361 2.1188 -1.5949 8 7 6.0739 1.7392 -2.5364 9 14 5.5687 3.6784 -0.6221 10 1 6.4828 3.3719 0.5072 11 1 6.1987 4.6897 -1.5085 12 1 4.2889 4.2135 -0.0920 13 6 4.3177 1.5339 1.1149 14 6 4.6096 0.1265 1.6391 15 7 5.4250 0.2169 2.8529 16 6 5.8070 -0.9058 3.4932 17 8 5.4754 -1.9909 3.0649 18 6 6.6453 -0.8129 4.7421 19 6 6.9374 -2.2203 5.2663 20 1 6.0105 -2.7828 5.3783 21 6 7.8850 -2.9421 4.3366 22 6 8.8216 -3.5578 5.0055 23 6 8.6545 -3.3497 6.4928 24 6 7.6892 -2.1480 6.6155 25 1 -0.3633 -1.0245 -0.0802 26 1 -0.3633 0.4428 0.9274 27 1 -0.3633 0.5818 -0.8471 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6182 1.9770 -0.8511 31 1 1.7379 1.9347 0.9244 32 1 6.8641 2.2691 -2.7249 33 1 5.2563 2.0379 0.8849 34 1 3.7780 2.0998 1.8743 35 1 3.6710 -0.3776 1.8691 36 1 5.1493 -0.4394 0.8798 37 1 5.6899 1.0848 3.1957 38 1 7.5838 -0.3081 4.5130 39 1 6.1047 -0.2477 5.5013 40 1 7.7984 -2.9480 3.2601 41 1 9.6122 -4.1395 4.5550 42 1 9.6140 -3.1146 6.9533 43 1 8.2190 -4.2355 6.9552 44 1 8.2397 -1.2116 6.7066 45 1 7.0040 -2.2797 7.4529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714648280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:23:09 Heat of formation + Delta-G solvation = -35.480217 kcal Electronic energy + Delta-G solvation = -22101.187621 eV Core-core repulsion = 18925.126447 eV Total energy + Delta-G solvation = -3176.061174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.99245 -39.27076 -38.38900 -35.76379 -34.60999 -33.25215 -32.52168 -29.98698 -29.69951 -27.56310 -26.50498 -24.67457 -22.97125 -22.00980 -21.55257 -21.21200 -19.66502 -18.81388 -17.89004 -17.48974 -16.95168 -16.81666 -16.49832 -16.02011 -15.69251 -15.57821 -14.97891 -14.76710 -14.41868 -14.33627 -13.93567 -13.58548 -13.37764 -13.19289 -12.93946 -12.76783 -12.67065 -12.62919 -12.40209 -12.34134 -12.06883 -12.00496 -11.96874 -11.90414 -11.69023 -11.63630 -11.32519 -10.81221 -10.62309 -10.04198 -9.80029 -8.77050 -8.22041 -5.64857 1.29547 1.37027 1.43342 1.55520 1.70827 2.22521 2.42181 3.04780 3.41892 3.66781 3.73521 3.99277 4.01536 4.09208 4.19677 4.24949 4.36473 4.40678 4.50426 4.57333 4.59296 4.62072 4.67872 4.76138 4.76984 4.92460 4.97475 4.99285 4.99984 5.08900 5.12260 5.16953 5.25817 5.30651 5.38926 5.43853 5.48615 5.58378 5.69177 5.93237 5.96718 6.18711 6.62491 6.97674 7.33307 7.60267 8.01847 8.97664 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.004088 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.647267 B = 6847.634217 C = 7795.190261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.144 3.856 4 N -0.611 5.611 5 C -0.267 4.267 6 H 0.030 0.970 7 C -0.018 4.018 8 N -0.948 5.948 9 Si 0.948 3.052 10 H -0.265 1.265 11 H -0.309 1.309 12 H -0.251 1.251 13 C 0.129 3.871 14 C 0.118 3.882 15 N -0.720 5.720 16 C 0.501 3.499 17 O -0.589 6.589 18 C -0.122 4.122 19 C -0.055 4.055 20 H 0.070 0.930 21 C -0.174 4.174 22 C -0.174 4.174 23 C -0.098 4.098 24 C -0.113 4.113 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.413 0.587 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -1.845 22.098 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.020 3.980 4 N -0.334 5.334 5 C -0.397 4.397 6 H 0.048 0.952 7 C -0.215 4.215 8 N -0.591 5.591 9 Si 0.774 3.226 10 H -0.191 1.191 11 H -0.237 1.237 12 H -0.175 1.175 13 C 0.003 3.997 14 C -0.009 4.009 15 N -0.373 5.373 16 C 0.289 3.711 17 O -0.469 6.469 18 C -0.162 4.162 19 C -0.073 4.073 20 H 0.088 0.912 21 C -0.192 4.192 22 C -0.191 4.191 23 C -0.135 4.135 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.250 0.750 38 H 0.128 0.872 39 H 0.147 0.853 40 H 0.108 0.892 41 H 0.144 0.856 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.328 -2.541 21.686 21.837 hybrid contribution 0.573 0.484 -0.937 1.200 sum 0.900 -2.058 20.749 20.870 Atomic orbital electron populations 1.21653 0.93948 1.01719 1.02326 1.22012 0.96720 0.98987 1.00000 1.21153 0.81793 0.94742 1.00334 1.44103 1.01921 1.86185 1.01169 1.18531 1.10044 1.19431 0.91692 0.95180 1.26224 0.96664 1.00802 0.97829 1.70053 1.12497 1.39541 1.36967 0.85778 0.78781 0.80140 0.77862 1.19121 1.23735 1.17459 1.21434 0.95729 0.93607 0.88933 1.21807 0.93827 1.00064 0.85206 1.46033 1.54017 1.09806 1.27467 1.21574 0.79868 0.83339 0.86311 1.90678 1.57901 1.29364 1.68968 1.21786 1.00698 0.99649 0.94041 1.20828 0.98151 0.93870 0.94474 0.91221 1.23284 0.97014 1.00388 0.98518 1.23544 0.98645 0.99926 0.97027 1.21394 1.00600 0.98780 0.92749 1.22570 0.97905 0.99275 0.95238 0.92676 0.91302 0.92624 0.93323 0.95390 0.93640 0.91074 0.92764 0.93892 0.89742 0.92557 0.95971 0.75021 0.87219 0.85293 0.89177 0.85557 0.89561 0.90200 0.89273 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.91 71.98 0.71 -2.99 16 2 C -0.14 -4.87 6.23 30.59 0.19 -4.68 16 3 C 0.14 5.44 5.72 86.38 0.49 5.93 16 4 N -0.61 -27.99 2.04 -702.02 -1.43 -29.41 16 5 C -0.27 -15.19 9.87 84.03 0.83 -14.36 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 7 C -0.02 -1.06 5.27 84.86 0.45 -0.61 16 8 N -0.95 -59.49 13.97 21.65 0.30 -59.18 16 9 Si 0.95 43.99 25.24 68.60 1.73 45.72 16 10 H -0.26 -11.27 6.67 99.48 0.66 -10.60 16 11 H -0.31 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.25 -10.86 7.11 99.48 0.71 -10.15 16 13 C 0.13 5.05 4.68 86.38 0.40 5.45 16 14 C 0.12 4.60 6.00 86.38 0.52 5.12 16 15 N -0.72 -21.74 5.56 -463.06 -2.57 -24.31 16 16 C 0.50 15.46 7.63 87.66 0.67 16.13 16 17 O -0.59 -24.04 14.92 -3.03 -0.05 -24.09 16 18 C -0.12 -2.41 5.09 29.85 0.15 -2.26 16 19 C -0.05 -1.17 2.52 -10.86 -0.03 -1.20 16 20 H 0.07 1.76 7.90 -2.39 -0.02 1.74 16 21 C -0.17 -4.53 9.26 26.26 0.24 -4.29 16 22 C -0.17 -3.61 10.78 26.26 0.28 -3.33 16 23 C -0.10 -1.46 6.81 30.53 0.21 -1.25 16 24 C -0.11 -1.55 6.71 31.70 0.21 -1.34 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.74 6.76 -2.39 -0.02 1.72 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 31 H 0.07 2.22 7.83 -2.38 -0.02 2.20 16 32 H 0.26 15.59 8.31 -92.72 -0.77 14.82 16 33 H 0.04 1.82 3.64 -2.39 -0.01 1.81 16 34 H 0.08 2.64 7.86 -2.39 -0.02 2.62 16 35 H 0.06 2.23 6.76 -2.39 -0.02 2.21 16 36 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.41 9.32 8.47 -92.70 -0.79 8.54 16 38 H 0.11 1.85 8.13 -2.39 -0.02 1.83 16 39 H 0.13 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.09 2.94 7.58 -2.91 -0.02 2.92 16 41 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.09 0.97 7.91 -2.39 -0.02 0.95 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -74.66 357.72 3.45 -71.21 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.12 Total: 23.74 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.34 Total: -3.67 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -3.70 Total: -112.91 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.73 Total: 45.72 kcal Total: -74.66 3.45 -71.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714648280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.730 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds